Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s58.

Sample reads: 391,647. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 6556.48 16740.78 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 3587.65 9160.41 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 2806.89 7166.88 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. SFRP1 ENSG00000104332 2475.31 6320.25 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
5. ACTB ENSG00000075624 2326.87 5941.24 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
6. RPL5 ENSG00000122406 2110.95 5389.93 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
7. ACTG1 ENSG00000184009 1927.81 4922.31 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
8. RPS20 ENSG00000008988 1856.48 4740.18 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
9. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1584.66 4046.14 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
10. PPIA ENSG00000196262 1565.38 3996.91 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
11. RPL15 ENSG00000174748 1551.89 3962.47 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
12. COL1A1 ENSG00000108821 1534.54 3918.17 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
13. RPS6 ENSG00000137154 1528.75 3903.39 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
14. MDK ENSG00000110492 1519.11 3878.77 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
15. MTRNR2L8 ENSG00000255823 1334.04 3406.23 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
16. COL3A1 ENSG00000168542 1299.34 3317.63 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
17. RPL18A ENSG00000105640 1253.08 3199.51 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
18. RPL9 ENSG00000163682 1228.02 3135.53 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
19. TUBA1B ENSG00000123416 1218.38 3110.91 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
20. RPS5 ENSG00000083845 1208.74 3086.30 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
21. RPL37 ENSG00000145592 1185.60 3027.21 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
22. VIM ENSG00000026025 1172.11 2992.77 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
23. MTRNR2L1 ENSG00000256618 1162.47 2968.16 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
24. RPL23 ENSG00000125691 1104.64 2820.50 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
25. RPL34 ENSG00000109475 1098.85 2805.71 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
26. RPL10A ENSG00000198755 1060.30 2707.28 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
27. GNAS ENSG00000087460 1054.51 2692.50 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
28. GAPDH ENSG00000111640 1035.23 2643.27 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
29. DLK1 ENSG00000185559 1006.32 2569.46 delta like non-canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2907]
30. RPS27A ENSG00000143947 983.18 2510.37 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
31. RPS12 ENSG00000112306 971.62 2480.86 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
32. NGFRAP1 NGFRAP1 963.91 2461.17
33. RPLP1 ENSG00000137818 952.34 2431.63 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
34. RPL14 ENSG00000188846 946.55 2416.84 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
35. STMN1 ENSG00000117632 913.78 2333.17 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
36. HSP90AB1 ENSG00000096384 886.79 2264.26 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
37. RPL7A ENSG00000148303, ENSG00000280858 886.79 2264.26 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
38. RPL13 ENSG00000167526 871.37 2224.89 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
39. RPS15A ENSG00000134419 865.59 2210.13 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. RPS27 ENSG00000177954 852.09 2175.66 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
41. RPS8 ENSG00000142937 830.89 2121.53 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
42. RPL31 ENSG00000071082 827.03 2111.67 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
43. DDX17 ENSG00000100201 825.10 2106.74 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
44. RPS11 ENSG00000142534 811.61 2072.30 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
45. IFITM3 ENSG00000142089 796.19 2032.93 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
46. RPS23 ENSG00000186468 778.84 1988.63 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
47. TPT1 ENSG00000133112 776.91 1983.70 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
48. NPM1 ENSG00000181163 746.06 1904.93 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
49. RPS2 ENSG00000140988 722.93 1845.87 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
50. RPS14 ENSG00000164587 701.72 1791.71 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
51. RPL10 ENSG00000147403 697.87 1781.88 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
52. COL1A2 ENSG00000164692 678.59 1732.66 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
53. RPL3 ENSG00000100316 676.66 1727.73 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
54. IFITM2 ENSG00000185201 672.81 1717.90 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
55. SPARC ENSG00000113140 667.02 1703.11 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
56. UBB ENSG00000170315 653.53 1668.67 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
57. HNRNPC ENSG00000092199 638.11 1629.30 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
58. RPS16 ENSG00000105193 632.32 1614.51 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
59. RPS3A ENSG00000145425 628.47 1604.68 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
60. RPL6 ENSG00000089009 626.54 1599.76 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
61. RPLP0 ENSG00000089157 620.75 1584.97 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
62. RPL11 ENSG00000142676 618.83 1580.07 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
63. RPS28 ENSG00000233927 611.12 1560.38 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
64. RBM3 ENSG00000102317 609.19 1555.46 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
65. RPL35 ENSG00000136942 607.26 1550.53 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
66. RPS7 ENSG00000171863 601.48 1535.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
67. RPL37A ENSG00000197756 595.69 1520.99 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
68. HNRNPD ENSG00000138668 589.91 1506.23 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
69. CFL1 ENSG00000172757 560.99 1432.39 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
70. ATP5G2 549.43 1402.87 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
71. RPS25 ENSG00000118181, ENSG00000280831 549.43 1402.87 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. PXDN ENSG00000130508 539.79 1378.26 peroxidasin [Source:HGNC Symbol;Acc:HGNC:14966]
73. SERF2 ENSG00000140264 539.79 1378.26 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
74. HMGN1 ENSG00000205581 535.93 1368.40 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
75. HNRNPA1 ENSG00000135486 524.36 1338.86 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
76. EIF4G2 ENSG00000110321 516.65 1319.17 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
77. HNRNPH1 ENSG00000169045, ENSG00000284254 514.73 1314.27 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
78. PFN1 ENSG00000108518 508.94 1299.49 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
79. RPL32 ENSG00000144713 505.09 1289.66 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
80. GPC3 ENSG00000147257 501.23 1279.80 glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
81. RPS21 ENSG00000171858 501.23 1279.80 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
82. RPS14P3 497.38 1269.97 ribosomal protein S14 pseudogene 3
83. RPL18 ENSG00000063177 487.74 1245.36 ribosomal protein L18 [Source:HGNC Symbol;Acc:HGNC:10310]
84. RPL29 ENSG00000162244 485.81 1240.43 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
85. KCNQ1OT1 ENSG00000269821 483.88 1235.50 KCNQ1 opposite strand/antisense transcript 1 [Source:HGNC Symbol;Acc:HGNC:6295]
86. MARCKS ENSG00000277443 470.39 1201.06 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
87. HSPA8 ENSG00000109971 466.53 1191.20 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
88. RPS15 ENSG00000115268 462.67 1181.34 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
89. MAB21L3 ENSG00000173212 460.75 1176.44 mab-21 like 3 [Source:HGNC Symbol;Acc:HGNC:26787]
90. RPL39 ENSG00000198918 460.75 1176.44 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
91. RPL4 ENSG00000174444 458.82 1171.51 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
92. RPS19 ENSG00000105372 454.96 1161.66 ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
93. HMGA2 ENSG00000149948 449.18 1146.90 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
94. PRKAR1A ENSG00000108946 447.25 1141.97 protein kinase cAMP-dependent type I regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9388]
95. ITM2C ENSG00000135916 445.32 1137.04 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
96. CCND2 ENSG00000118971 441.47 1127.21 cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]
97. MEG3 ENSG00000214548 441.47 1127.21 maternally expressed 3 [Source:HGNC Symbol;Acc:HGNC:14575]
98. RPL35A ENSG00000182899 441.47 1127.21 ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
99. MORF4L1 ENSG00000185787 437.61 1117.36 mortality factor 4 like 1 [Source:HGNC Symbol;Acc:HGNC:16989]
100. USP22 ENSG00000124422 437.61 1117.36 ubiquitin specific peptidase 22 [Source:HGNC Symbol;Acc:HGNC:12621]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA