Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s54.

Sample reads: 391,651. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 7218.08 18429.90 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 3438.67 8779.95 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 3045.19 7775.27 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. RPS20 ENSG00000008988 2634.61 6726.94 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
5. RPL5 ENSG00000122406 2339.50 5973.44 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
6. ACTB ENSG00000075624 2099.99 5361.90 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
7. ACTG1 ENSG00000184009 2097.13 5354.60 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
8. SFRP1 ENSG00000104332 2087.15 5329.11 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
9. RPL15 ENSG00000174748 1806.30 4612.02 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
10. PPIA ENSG00000196262 1660.88 4240.72 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
11. RPL13AP20 ENSG00000234498 1505.49 3843.96 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
12. MDK ENSG00000110492 1489.81 3803.93 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
13. RPS6 ENSG00000137154 1476.98 3771.17 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
14. RPS5 ENSG00000083845 1472.70 3760.24 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
15. MTRNR2L1 ENSG00000256618 1422.80 3632.83 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
16. RPS23 ENSG00000186468 1384.31 3534.55 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
17. MTRNR2L8 ENSG00000255823 1357.22 3465.39 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
18. RPL18A ENSG00000105640 1332.98 3403.49 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
19. GNAS ENSG00000087460 1285.94 3283.39 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
20. TUBA1B ENSG00000123416 1277.38 3261.53 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
21. NGFRAP1 NGFRAP1 1267.40 3236.05
22. HSP90AB1 ENSG00000096384 1241.74 3170.53 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
23. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1223.21 3123.22 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
24. RPL9 ENSG00000163682 1194.70 3050.42 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
25. RPL10A ENSG00000198755 1191.85 3043.15 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
26. RPL23 ENSG00000125691 1161.91 2966.70 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
27. RPL31 ENSG00000071082 1119.14 2857.50 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
28. RPL37 ENSG00000145592 1107.73 2828.36 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
29. RPS12 ENSG00000112306 1094.90 2795.60 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
30. GAPDH ENSG00000111640 1087.77 2777.40 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
31. RPL34 ENSG00000109475 1069.24 2730.09 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
32. TPT1 ENSG00000133112 1053.56 2690.05 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
33. RPS27A ENSG00000143947 1049.28 2679.12 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
34. RPL14 ENSG00000188846 1047.85 2675.47 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
35. COL3A1 ENSG00000168542 1025.04 2617.23 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
36. RPS11 ENSG00000142534 1017.92 2599.05 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
37. RPS15A ENSG00000134419 1013.64 2588.12 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPL13 ENSG00000167526 987.98 2522.61 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
39. STMN1 ENSG00000117632 983.70 2511.68 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
40. RPS8 ENSG00000142937 965.17 2464.37 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
41. VIM ENSG00000026025 938.08 2395.20 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
42. RPL37A ENSG00000197756 918.12 2344.23 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
43. COL1A1 ENSG00000108821 899.59 2296.92 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
44. RPLP1 ENSG00000137818 872.50 2227.75 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
45. RPL10 ENSG00000147403 825.45 2107.62 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
46. RPL7A ENSG00000148303, ENSG00000280858 802.64 2049.38 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
47. IFITM3 ENSG00000142089 794.09 2027.55 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
48. RPS27 ENSG00000177954 792.66 2023.90 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
49. HNRNPC ENSG00000092199 778.41 1987.51 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
50. DDX17 ENSG00000100201 767.00 1958.38 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
51. NPM1 ENSG00000181163 765.58 1954.75 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
52. RPL3 ENSG00000100316 742.76 1896.49 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
53. RPS16 ENSG00000105193 741.34 1892.86 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. IFITM2 ENSG00000185201 735.64 1878.31 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
55. UBB ENSG00000170315 728.51 1860.10 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
56. PFN1 ENSG00000108518 727.08 1856.45 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
57. RPS3A ENSG00000145425 718.53 1834.62 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
58. RPS2 ENSG00000140988 707.12 1805.49 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
59. RPS7 ENSG00000171863 702.85 1794.58 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
60. RPS14 ENSG00000164587 697.14 1780.01 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
61. DLK1 ENSG00000185559 675.76 1725.42 delta like non-canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2907]
62. RPS25 ENSG00000118181, ENSG00000280831 674.33 1721.76 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
63. RPL11 ENSG00000142676 661.50 1689.01 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
64. CFL1 ENSG00000172757 660.08 1685.38 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
65. RPL6 ENSG00000089009 657.23 1678.10 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
66. EIF4G2 ENSG00000110321 637.27 1627.14 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
67. RPL32 ENSG00000144713 635.84 1623.49 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
68. HSPA8 ENSG00000109971 628.71 1605.28 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
69. HNRNPH1 ENSG00000169045, ENSG00000284254 627.29 1601.66 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
70. RPS21 ENSG00000171858 621.58 1587.08 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
71. RPL29 ENSG00000162244 620.16 1583.45 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
72. SPARC ENSG00000113140 620.16 1583.45 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
73. SERF2 ENSG00000140264 618.73 1579.80 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
74. RPL35 ENSG00000136942 615.88 1572.52 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
75. RBM3 ENSG00000102317 604.48 1543.42 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
76. RPS14P3 604.48 1543.42 ribosomal protein S14 pseudogene 3
77. KCTD12 ENSG00000178695 601.63 1536.14 potassium channel tetramerization domain containing 12 [Source:HGNC Symbol;Acc:HGNC:14678]
78. HNRNPD ENSG00000138668 595.92 1521.56 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
79. RPS15 ENSG00000115268 595.92 1521.56 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
80. RPS28 ENSG00000233927 593.07 1514.28 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
81. RPS29 ENSG00000213741 591.65 1510.66 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
82. RPL26 ENSG00000161970 588.79 1503.36 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
83. SPINT2 ENSG00000167642 538.90 1375.97 serine peptidase inhibitor, Kunitz type 2 [Source:HGNC Symbol;Acc:HGNC:11247]
84. RPL4 ENSG00000174444 526.07 1343.21 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
85. COL1A2 ENSG00000164692 524.64 1339.56 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
86. GABARAP ENSG00000170296 521.79 1332.28 GABA type A receptor-associated protein [Source:HGNC Symbol;Acc:HGNC:4067]
87. ATP5G2 510.38 1303.15 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
88. RPLP0 ENSG00000089157 510.38 1303.15 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
89. HMGN1 ENSG00000205581 506.11 1292.25 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
90. ITM2C ENSG00000135916 500.40 1277.67 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
91. RPL35A ENSG00000182899 494.70 1263.12 ribosomal protein L35a [Source:HGNC Symbol;Acc:HGNC:10345]
92. HNRNPA2B1 ENSG00000122566 493.28 1259.49 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
93. SRSF3 ENSG00000112081 486.15 1241.29 serine and arginine rich splicing factor 3 [Source:HGNC Symbol;Acc:HGNC:10785]
94. ITM2B ENSG00000136156 473.32 1208.53 integral membrane protein 2B [Source:HGNC Symbol;Acc:HGNC:6174]
95. RPL38 ENSG00000172809 471.89 1204.88 ribosomal protein L38 [Source:HGNC Symbol;Acc:HGNC:10349]
96. H3F3B ENSG00000132475 464.76 1186.67 H3 histone family member 3B [Source:HGNC Symbol;Acc:HGNC:4765]
97. TPM4 ENSG00000167460 461.91 1179.39 tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
98. RPS19 ENSG00000105372 460.49 1175.77 ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
99. RPL39 ENSG00000198918 456.21 1164.84 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
100. SRP14 ENSG00000140319 456.21 1164.84 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA