Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s50.

Sample reads: 391,639. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 6874.83 17554.28 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 4130.34 10546.46 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 2883.87 7363.71 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. RPS20 ENSG00000008988 2710.84 6921.89 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
5. ACTB ENSG00000075624 2156.49 5506.41 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
6. RPL5 ENSG00000122406 2103.62 5371.41 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
7. ACTG1 ENSG00000184009 1994.68 5093.24 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
8. RPL15 ENSG00000174748 1733.53 4426.42 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
9. MDK ENSG00000110492 1613.37 4119.60 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
10. PPIA ENSG00000196262 1600.55 4086.87 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
11. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1597.34 4078.67 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
12. RPS6 ENSG00000137154 1533.26 3915.05 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
13. RPL9 ENSG00000163682 1507.62 3849.58 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
14. SFRP1 ENSG00000104332 1440.33 3677.76 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
15. MTRNR2L1 ENSG00000256618 1326.58 3387.31 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
16. MTRNR2L8 ENSG00000255823 1320.17 3370.94 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
17. RPL13AP20 ENSG00000234498 1312.16 3350.49 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
18. RPL18A ENSG00000105640 1307.35 3338.20 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
19. RPS5 ENSG00000083845 1304.15 3330.03 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
20. RPL34 ENSG00000109475 1204.82 3076.40 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
21. GNAS ENSG00000087460 1200.01 3064.12 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
22. RPS23 ENSG00000186468 1166.37 2978.22 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
23. RPL10A ENSG00000198755 1132.72 2892.30 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
24. RPL37 ENSG00000145592 1097.47 2802.29 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
25. NGFRAP1 NGFRAP1 1076.64 2749.11
26. RPL23 ENSG00000125691 1071.84 2736.85 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
27. TUBA1B ENSG00000123416 1065.43 2720.48 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
28. RPL13 ENSG00000167526 1022.17 2610.02 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
29. HSP90AB1 ENSG00000096384 998.14 2548.66 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
30. RPS27A ENSG00000143947 974.11 2487.31 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
31. COL1A1 ENSG00000108821 954.88 2438.20 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
32. GAPDH ENSG00000111640 953.28 2434.12 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
33. TPT1 ENSG00000133112 945.27 2413.66 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
34. RPS11 ENSG00000142534 900.41 2299.12 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
35. RPS8 ENSG00000142937 895.60 2286.84 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
36. RPS12 ENSG00000112306 871.57 2225.48 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
37. RPS27 ENSG00000177954 871.57 2225.48 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
38. RPL31 ENSG00000071082 863.56 2205.03 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
39. VIM ENSG00000026025 855.55 2184.57 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
40. STMN1 ENSG00000117632 845.94 2160.03 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
41. COL3A1 ENSG00000168542 820.30 2094.56 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
42. RPLP1 ENSG00000137818 801.08 2045.49 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
43. DDX17 ENSG00000100201 791.46 2020.92 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
44. RPL3 ENSG00000100316 789.86 2016.84 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
45. RPL35 ENSG00000136942 789.86 2016.84 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
46. IFITM3 ENSG00000142089 781.85 1996.39 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
47. RPL10 ENSG00000147403 749.81 1914.57 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
48. CFL1 ENSG00000172757 735.39 1877.75 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
49. NPM1 ENSG00000181163 730.58 1865.47 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
50. RPS7 ENSG00000171863 728.98 1861.39 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. RPL29 ENSG00000162244 727.38 1857.30 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
52. RPS15A ENSG00000134419 727.38 1857.30 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
53. RPS2 ENSG00000140988 725.77 1853.19 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
54. UBB ENSG00000170315 724.17 1849.11 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
55. RPL37A ENSG00000197756 712.96 1820.48 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
56. HNRNPC ENSG00000092199 711.35 1816.37 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
57. PFN1 ENSG00000108518 709.75 1812.29 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
58. ITM2C ENSG00000135916 708.15 1808.20 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
59. EIF4G2 ENSG00000110321 695.33 1775.46 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
60. RPS3A ENSG00000145425 677.71 1730.47 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
61. IFITM2 ENSG00000185201 660.09 1685.48 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
62. RBM3 ENSG00000102317 645.67 1648.66 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
63. RPL14 ENSG00000188846 645.67 1648.66 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
64. HNRNPD ENSG00000138668 629.64 1607.73 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
65. RPL11 ENSG00000142676 626.44 1599.56 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
66. HMGN1 ENSG00000205581 621.63 1587.28 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
67. RPS16 ENSG00000105193 616.83 1575.02 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
68. RPL7A ENSG00000148303, ENSG00000280858 615.23 1570.94 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
69. ATP5G2 600.81 1534.12 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
70. RPL6 ENSG00000089009 600.81 1534.12 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
71. RPS29 ENSG00000213741 592.80 1513.66 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
72. RPS14 ENSG00000164587 591.19 1509.55 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
73. RPL32 ENSG00000144713 576.77 1472.73 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
74. ITM2B ENSG00000136156 573.57 1464.56 integral membrane protein 2B [Source:HGNC Symbol;Acc:HGNC:6174]
75. SERF2 ENSG00000140264 570.37 1456.39 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
76. RPS21 ENSG00000171858 559.15 1427.74 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
77. RPS28 ENSG00000233927 555.95 1419.57 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
78. RPS25 ENSG00000118181, ENSG00000280831 551.14 1407.29 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. PXDN ENSG00000130508 543.13 1386.84 peroxidasin [Source:HGNC Symbol;Acc:HGNC:14966]
80. CD24 ENSG00000272398 538.32 1374.55 CD24 molecule [Source:HGNC Symbol;Acc:HGNC:1645]
81. HNRNPH1 ENSG00000169045, ENSG00000284254 535.12 1366.38 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
82. RPS15 ENSG00000115268 530.31 1354.10 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
83. SPARC ENSG00000113140 517.49 1321.37 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
84. HSPA8 ENSG00000109971 507.88 1296.83 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
85. MARCKS ENSG00000277443 487.05 1243.64 myristoylated alanine rich protein kinase C substrate [Source:HGNC Symbol;Acc:HGNC:6759]
86. PBX1 ENSG00000185630 487.05 1243.64 PBX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
87. RPL26 ENSG00000161970 485.45 1239.55 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
88. RPS14P3 479.04 1223.19 ribosomal protein S14 pseudogene 3
89. COL1A2 ENSG00000164692 475.84 1215.02 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
90. KCTD12 ENSG00000178695 475.84 1215.02 potassium channel tetramerization domain containing 12 [Source:HGNC Symbol;Acc:HGNC:14678]
91. H3F3B ENSG00000132475 469.43 1198.65 H3 histone family member 3B [Source:HGNC Symbol;Acc:HGNC:4765]
92. PRKAR1A ENSG00000108946 466.23 1190.48 protein kinase cAMP-dependent type I regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9388]
93. PCBP2 ENSG00000197111 464.62 1186.37 poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8648]
94. HNRNPA1 ENSG00000135486 455.01 1161.83 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
95. GABARAP ENSG00000170296 453.41 1157.74 GABA type A receptor-associated protein [Source:HGNC Symbol;Acc:HGNC:4067]
96. RPS13 ENSG00000110700 451.81 1153.66 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
97. RPL39 ENSG00000198918 448.60 1145.46 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
98. RPL4 ENSG00000174444 442.19 1129.09 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
99. SOX4 ENSG00000124766 440.59 1125.01 SRY-box 4 [Source:HGNC Symbol;Acc:HGNC:11200]
100. HNRNPA2B1 ENSG00000122566 437.39 1116.84 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA