Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s51.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5865.45 47210.41
2. MT-ATP6 MT-ATP6 5332.23 42918.57
3. MT-ND5 MT-ND5 4265.78 34334.83
4. GAPDH ENSGALG00000014442 2666.11 21459.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-CYB MT-CYB 2132.89 17167.41
6. MT-ND4 MT-ND4 2132.89 17167.41
7. EEF1A EEF1A 1599.67 12875.58
8. EIF1 ENSGALG00000028517 1599.67 12875.58 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
9. MT-CO1 MT-CO1 1599.67 12875.58
10. MT-ND1 MT-ND1 1599.67 12875.58
11. NAA30 ENSGALG00000012098 1599.67 12875.58 N(alpha)-acetyltransferase 30, NatC catalytic subunit [Source:HGNC Symbol;Acc:HGNC:19844]
12. PPIA ENSGALG00000028600 1599.67 12875.58 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. RPL27 ENSGALG00000002837 1599.67 12875.58 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
14. RPS12 ENSGALG00000013990 1599.67 12875.58 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
15. RPS23 ENSGALG00000015617 1599.67 12875.58 ribosomal protein S23
16. gga-mir-3527 gga-mir-3527 1599.67 12875.58
17. ANP32E ENSGALG00000039891 1066.45 8583.75 acidic nuclear phosphoprotein 32 family member E [Source:NCBI gene;Acc:426109]
18. CPSF4 ENSGALG00000004714 1066.45 8583.75 cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:416494]
19. CSNK2A1 ENSGALG00000006197 1066.45 8583.75 casein kinase 2 alpha 1 [Source:NCBI gene;Acc:432370]
20. EEF1B2 ENSGALG00000008590 1066.45 8583.75 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
21. EIF5 ENSGALG00000011464 1066.45 8583.75 eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
22. GYG1 ENSGALG00000035535 1066.45 8583.75 glycogenin 1 [Source:NCBI gene;Acc:425050]
23. H3-IX H3-IX 1066.45 8583.75
24. HMGN5 ENSGALG00000007131 1066.45 8583.75 high mobility group nucleosome binding domain 5, transcript variant X1
25. NME2 ENSGALG00000002932 1066.45 8583.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
26. PPAT ENSGALG00000013728 1066.45 8583.75 phosphoribosyl pyrophosphate amidotransferase [Source:NCBI gene;Acc:422743]
27. RPL21 ENSGALG00000027035 1066.45 8583.75 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
28. RPL7 ENSGALG00000035252 1066.45 8583.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. RPLP2 ENSGALG00000034811 1066.45 8583.75 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
30. RPS6 ENSGALG00000015082 1066.45 8583.75 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
31. TXN ENSGALG00000015704 1066.45 8583.75 thioredoxin [Source:NCBI gene;Acc:396437]
32. ACTG1 ENSGALG00000001381 533.22 4291.83 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
33. ACTG1_1 ENSGALG00000001381 533.22 4291.83 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
34. ACTR6 ENSGALG00000040976 533.22 4291.83 ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
35. ADAR ENSGALG00000021475 533.22 4291.83 adenosine deaminase, RNA specific [Source:HGNC Symbol;Acc:HGNC:225]
36. AIRC AIRC 533.22 4291.83
37. ALDH1A2 ENSGALG00000004270 533.22 4291.83 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
38. ARHGEF7 ENSGALG00000031009 533.22 4291.83 Rho guanine nucleotide exchange factor 7 [Source:HGNC Symbol;Acc:HGNC:15607]
39. ATP5F1 533.22 4291.83 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
40. ATP5H 533.22 4291.83 ATP synthase, H+ transporting, mitochondrial Fo complex subunit D, transcript variant X2
41. ATP5MC1 ENSGALG00000001330 533.22 4291.83 ATP synthase membrane subunit c locus 1 [Source:HGNC Symbol;Acc:HGNC:841]
42. ATP6V0B ENSGALG00000010091 533.22 4291.83 ATPase H+ transporting V0 subunit b [Source:NCBI gene;Acc:424575]
43. BMP4 ENSGALG00000012429 533.22 4291.83 bone morphogenetic protein 4 [Source:NCBI gene;Acc:396165]
44. BRIX1 ENSGALG00000003373 533.22 4291.83 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
45. BUB3 ENSGALG00000009681 533.22 4291.83 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
46. C11orf57 C11orf57 533.22 4291.83
47. C9orf89 C9orf89 533.22 4291.83
48. CALM_1 CALM_1 533.22 4291.83
49. CIRBP ENSGALG00000030918 533.22 4291.83 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
50. CKAP4 ENSGALG00000012659 533.22 4291.83 cytoskeleton associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16991]
51. CNOT7 ENSGALG00000013649 533.22 4291.83 CCR4-NOT transcription complex subunit 7 [Source:NCBI gene;Acc:422733]
52. COX4I1 533.22 4291.83 cytochrome c oxidase subunit 4I1, transcript variant X1
53. CREB1 ENSGALG00000008494 533.22 4291.83 cAMP responsive element binding protein 1 [Source:NCBI gene;Acc:395099]
54. CRHOA CRHOA 533.22 4291.83
55. CTU2 533.22 4291.83 cytosolic thiouridylase subunit 2, transcript variant X3
56. CWC22 ENSGALG00000009001 533.22 4291.83 CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
57. DCUN1D1 ENSGALG00000008807 533.22 4291.83 defective in cullin neddylation 1 domain containing 1 [Source:NCBI gene;Acc:424963]
58. DERL1 ENSGALG00000033950 533.22 4291.83 derlin 1 [Source:NCBI gene;Acc:420350]
59. DHCR24 ENSGALG00000010798 533.22 4291.83 24-dehydrocholesterol reductase [Source:NCBI gene;Acc:424661]
60. DSTN ENSGALG00000008667 533.22 4291.83 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
61. EIF5A2 ENSGALG00000009309 533.22 4291.83 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
62. ENSGALG00000021694 ENSGALG00000021694 533.22 4291.83
63. ENSGALG00000028413 ENSGALG00000028413 533.22 4291.83
64. FARP1 ENSGALG00000016886 533.22 4291.83 FERM, ARH/RhoGEF and pleckstrin domain protein 1 [Source:NCBI gene;Acc:418781]
65. FAT1 ENSGALG00000013579 533.22 4291.83 FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
66. FBXO9 ENSGALG00000016320 533.22 4291.83 F-box protein 9 [Source:NCBI gene;Acc:421895]
67. GLO1 ENSGALG00000010127 533.22 4291.83 glyoxalase I [Source:HGNC Symbol;Acc:HGNC:4323]
68. GNA12 ENSGALG00000004368 533.22 4291.83 G protein subunit alpha 12 [Source:HGNC Symbol;Acc:HGNC:4380]
69. GNB1 ENSGALG00000001334 533.22 4291.83 G protein subunit beta 1 [Source:NCBI gene;Acc:419402]
70. GTLF3B GTLF3B 533.22 4291.83
71. HBG1 HBG1 533.22 4291.83
72. HMGN2 HMGN2 533.22 4291.83
73. HNRNPDL ENSGALG00000023199 533.22 4291.83 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
74. HNRNPR ENSGALG00000000814 533.22 4291.83 heterogeneous nuclear ribonucleoprotein R [Source:NCBI gene;Acc:419570]
75. HP1BP3 ENSGALG00000010079 533.22 4291.83 heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
76. HSPA12A ENSGALG00000009248 533.22 4291.83 heat shock protein family A (Hsp70) member 12A [Source:HGNC Symbol;Acc:HGNC:19022]
77. HSPA8 ENSGALG00000006512 533.22 4291.83 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
78. IGF2BP3 ENSGALG00000010961 533.22 4291.83 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
79. INTS2 ENSGALG00000005269 533.22 4291.83 integrator complex subunit 2 [Source:NCBI gene;Acc:417640]
80. IPO7 ENSGALG00000005807 533.22 4291.83 importin 7 [Source:HGNC Symbol;Acc:HGNC:9852]
81. KLHDC2 ENSGALG00000012244 533.22 4291.83 kelch domain containing 2 [Source:NCBI gene;Acc:423569]
82. LAMTOR2 ENSGALG00000029881 533.22 4291.83 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 [Source:HGNC Symbol;Acc:HGNC:29796]
83. LAPTM4A ENSGALG00000016479 533.22 4291.83 lysosomal protein transmembrane 4 alpha [Source:NCBI gene;Acc:421959]
84. LMO7 ENSGALG00000016920 533.22 4291.83 LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646]
85. MAB21L2 533.22 4291.83 mab-21-like 2 (C. elegans)
86. MAD2L1BP ENSGALG00000027871 533.22 4291.83 MAD2L1 binding protein [Source:HGNC Symbol;Acc:HGNC:21059]
87. MAP4K3 ENSGALG00000039720 533.22 4291.83 mitogen-activated protein kinase kinase kinase kinase 3, transcript variant X10
88. MCM6 ENSGALG00000012348 533.22 4291.83 minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
89. MED6 ENSGALG00000029743 533.22 4291.83 mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
90. MGST1 ENSGALG00000013098 533.22 4291.83 microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
91. MMD ENSGALG00000003078 533.22 4291.83 monocyte to macrophage differentiation associated [Source:NCBI gene;Acc:417397]
92. MT-ND3 MT-ND3 533.22 4291.83
93. MT-ND6 MT-ND6 533.22 4291.83
94. MTA1 ENSGALG00000002803 533.22 4291.83 metastasis associated 1 [Source:NCBI gene;Acc:429060]
95. MYBL2 ENSGALG00000003503 533.22 4291.83 MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
96. NDUFA11 ENSGALG00000021692 533.22 4291.83 NADH:ubiquinone oxidoreductase subunit A11
97. NDUFB9 ENSGALG00000042242 533.22 4291.83 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
98. NDUFV2 ENSGALG00000036625 533.22 4291.83 NADH:ubiquinone oxidoreductase core subunit V2 [Source:HGNC Symbol;Acc:HGNC:7717]
99. NSUN4 ENSGALG00000010360 533.22 4291.83 NOP2/Sun RNA methyltransferase family member 4 [Source:NCBI gene;Acc:424613]
100. NUSAP1 ENSGALG00000008584 533.22 4291.83 nucleolar and spindle associated protein 1 [Source:NCBI gene;Acc:423213]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA