Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s43.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6350.97 51117.89
2. MT-CO1 MT-CO1 4763.23 38338.44
3. MT-CO3 MT-CO3 4763.23 38338.44
4. MT-CYB MT-CYB 3969.36 31948.71
5. MT-ND4 MT-ND4 3572.42 28753.81
6. MT-ND3 MT-ND3 2778.55 22364.08
7. MT-ND5 MT-ND5 2381.62 19169.26
8. ATP6V0C ENSGALG00000009229 1587.74 12779.45 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
9. GAPDH ENSGALG00000014442 1587.74 12779.45 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND1 MT-ND1 1587.74 12779.45
11. EEF1A EEF1A 1190.81 9584.63
12. MT-ND2 MT-ND2 1190.81 9584.63
13. RPL27A ENSGALG00000005948 1190.81 9584.63 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
14. gga-mir-3527 gga-mir-3527 1190.81 9584.63
15. ATP5G3 793.87 6389.73 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
16. CCT5 ENSGALG00000013041 793.87 6389.73 chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
17. CDC45 ENSGALG00000001616 793.87 6389.73 cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
18. EIF3F ENSGALG00000005326 793.87 6389.73 eukaryotic translation initiation factor 3 subunit F
19. EIF4G2 ENSGALG00000005587 793.87 6389.73 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
20. ERH ENSGALG00000017384 793.87 6389.73 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
21. MYO1B ENSGALG00000007712 793.87 6389.73 myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
22. PKIB ENSGALG00000027036 793.87 6389.73 protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:NCBI gene;Acc:769402]
23. RPL18A 793.87 6389.73 ribosomal protein L18a
24. RPL27 ENSGALG00000002837 793.87 6389.73 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPL7 ENSGALG00000035252 793.87 6389.73 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
26. RPS12 ENSGALG00000013990 793.87 6389.73 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
27. RPS13 ENSGALG00000006096 793.87 6389.73 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
28. SNRPD3 ENSGALG00000006596 793.87 6389.73 small nuclear ribonucleoprotein D3 polypeptide [Source:NCBI gene;Acc:416947]
29. SNRPE ENSGALG00000000137 793.87 6389.73 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
30. SPTAN1 ENSGALG00000004719 793.87 6389.73 spectrin alpha, non-erythrocytic 1 [Source:NCBI gene;Acc:374234]
31. STMN1 ENSGALG00000001475 793.87 6389.73 stathmin 1 [Source:NCBI gene;Acc:396057]
32. U2AF1 ENSGALG00000016198 793.87 6389.73 U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
33. gga-mir-3533 ENSGALG00000027736 793.87 6389.73 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
34. AATF ENSGALG00000005420 396.94 3194.90 apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
35. ACAD8 ENSGALG00000001557 396.94 3194.90 acyl-CoA dehydrogenase family member 8 [Source:NCBI gene;Acc:419739]
36. ACAD9 ENSGALG00000005034 396.94 3194.90 acyl-CoA dehydrogenase family member 9 [Source:NCBI gene;Acc:415974]
37. AHCY ENSGALG00000033677 396.94 3194.90 adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
38. AIRC AIRC 396.94 3194.90
39. ALDH1A2 ENSGALG00000004270 396.94 3194.90 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
40. ALDOC ENSGALG00000026077 396.94 3194.90 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
41. AMOTL2 396.94 3194.90 angiomotin like 2, transcript variant X3
42. API5 ENSGALG00000037968 396.94 3194.90 apoptosis inhibitor 5 [Source:NCBI gene;Acc:423168]
43. ARL4A ENSGALG00000027757 396.94 3194.90 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
44. ARL6IP1 ENSGALG00000006780 396.94 3194.90 ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:NCBI gene;Acc:416604]
45. ARL6IP5 ENSGALG00000038904 396.94 3194.90 ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
46. ATF4 ENSGALG00000012135 396.94 3194.90 activating transcription factor 4 [Source:NCBI gene;Acc:395693]
47. BIRC5 ENSGALG00000008713 396.94 3194.90 baculoviral IAP repeat containing 5 [Source:NCBI gene;Acc:374078]
48. CAPZB ENSGALG00000004034 396.94 3194.90 capping actin protein of muscle Z-line beta subunit [Source:NCBI gene;Acc:396418]
49. CCT4 ENSGALG00000008812 396.94 3194.90 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
50. CDCA9 ENSGALG00000021225 396.94 3194.90 cell division cycle associated 9 [Source:NCBI gene;Acc:415745]
51. CHMP1A ENSGALG00000006161 396.94 3194.90 charged multivesicular body protein 1A [Source:NCBI gene;Acc:415841]
52. CIRBP ENSGALG00000030918 396.94 3194.90 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
53. CNBP 396.94 3194.90 CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
54. COL4A5 ENSGALG00000008141 396.94 3194.90 collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
55. COMMD5 ENSGALG00000008867 396.94 3194.90 COMM domain containing 5 [Source:NCBI gene;Acc:422376]
56. COX20 ENSGALG00000027440 396.94 3194.90 COX20, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:421493]
57. CPSF6 ENSGALG00000019355 396.94 3194.90 cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
58. CRHOA CRHOA 396.94 3194.90
59. CSNK1D ENSGALG00000002719 396.94 3194.90 casein kinase 1 delta [Source:NCBI gene;Acc:417378]
60. CYB5A ENSGALG00000013708 396.94 3194.90 cytochrome b5 type A [Source:NCBI gene;Acc:414798]
61. CYTL1 ENSGALG00000015015 396.94 3194.90 cytokine like 1 [Source:HGNC Symbol;Acc:HGNC:24435]
62. DDX5 ENSGALG00000003532 396.94 3194.90 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
63. DENR ENSGALG00000003795 396.94 3194.90 density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
64. DGKD ENSGALG00000001730 396.94 3194.90 diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
65. DNAJC1 ENSGALG00000007914 396.94 3194.90 DnaJ heat shock protein family (Hsp40) member C1 [Source:HGNC Symbol;Acc:HGNC:20090]
66. DRG2 ENSGALG00000004953 396.94 3194.90 developmentally regulated GTP binding protein 2 [Source:NCBI gene;Acc:416513]
67. DSP ENSGALG00000012790 396.94 3194.90 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
68. EEF1B2 ENSGALG00000008590 396.94 3194.90 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
69. EIF1 ENSGALG00000028517 396.94 3194.90 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
70. EIF3B ENSGALG00000040999 396.94 3194.90 eukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]
71. EIF5 ENSGALG00000011464 396.94 3194.90 eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
72. ENSGALG00000002696 ENSGALG00000002696 396.94 3194.90
73. ENSGALG00000004132 ENSGALG00000004132 396.94 3194.90
74. ENSGALG00000016007 ENSGALG00000016007 396.94 3194.90
75. ENSGALG00000021397 ENSGALG00000021397 396.94 3194.90
76. EXOC4 ENSGALG00000008477 396.94 3194.90 exocyst complex component 4 [Source:NCBI gene;Acc:416700]
77. FAM110A ENSGALG00000046425 396.94 3194.90 family with sequence similarity 110 member A [Source:HGNC Symbol;Acc:HGNC:16188]
78. FBN2 ENSGALG00000014686 396.94 3194.90 fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
79. GBAS 396.94 3194.90 glioblastoma amplified sequence
80. GNB2L1 ENSGALG00000000122 396.94 3194.90 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
81. GPATCH2 ENSGALG00000009627 396.94 3194.90 G-patch domain containing 2 [Source:NCBI gene;Acc:421355]
82. GSR ENSGALG00000037781 396.94 3194.90 glutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]
83. H2AFZ ENSGALG00000014023 396.94 3194.90 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
84. H3-IX H3-IX 396.94 3194.90
85. HADH ENSGALG00000016124 396.94 3194.90 hydroxyacyl-CoA dehydrogenase [Source:NCBI gene;Acc:420290]
86. HIBCH ENSGALG00000043307 396.94 3194.90 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
87. HMGB2 ENSGALG00000010745 396.94 3194.90 high mobility group box 2 [Source:NCBI gene;Acc:396482]
88. HMGN5 ENSGALG00000007131 396.94 3194.90 high mobility group nucleosome binding domain 5, transcript variant X1
89. HNRNPU ENSGALG00000010671 396.94 3194.90 heterogeneous nuclear ribonucleoprotein U [Source:HGNC Symbol;Acc:HGNC:5048]
90. HSPA9 ENSGALG00000002363 396.94 3194.90 heat shock protein family A (Hsp70) member 9 [Source:NCBI gene;Acc:416183]
91. HSPE1 ENSGALG00000009070 396.94 3194.90 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
92. ID2 ENSGALG00000035016 396.94 3194.90 inhibitor of DNA binding 2, HLH protein [Source:NCBI gene;Acc:395852]
93. IGF2BP1 ENSGALG00000041204 396.94 3194.90 insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
94. IGF2BP3 ENSGALG00000010961 396.94 3194.90 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
95. ILK ENSGALG00000031642 396.94 3194.90 integrin linked kinase [Source:NCBI gene;Acc:374018]
96. INPP5E ENSGALG00000001964 396.94 3194.90 inositol polyphosphate-5-phosphatase E [Source:HGNC Symbol;Acc:HGNC:21474]
97. IPO7 ENSGALG00000005807 396.94 3194.90 importin 7 [Source:HGNC Symbol;Acc:HGNC:9852]
98. ITGA1 ENSGALG00000014891 396.94 3194.90 integrin subunit alpha 1 [Source:NCBI gene;Acc:395951]
99. KBTBD2 ENSGALG00000038704 396.94 3194.90 kelch repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21751]
100. KCNE3 ENSGALG00000022696 396.94 3194.90 potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA