Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s38.

Sample reads: 124,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 8243.12 66348.69
2. MT-ND5 MT-ND5 6052.38 48715.47
3. MT-CYB MT-CYB 5235.50 42140.42
4. MT-CO3 MT-CO3 4827.05 38852.82
5. MT-ND4 MT-ND4 4344.35 34967.58
6. MT-ND1 MT-ND1 3007.63 24208.35
7. gga-mir-3527 gga-mir-3527 2859.10 23012.83
8. gga-mir-3533 ENSGALG00000027736 2302.13 18529.79 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
9. GAPDH ENSGALG00000014442 1782.30 14345.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-CO1 MT-CO1 1782.30 14345.69
11. MT-ND3 MT-ND3 1410.98 11356.95
12. EEF1A EEF1A 1002.54 8069.42
13. KRT19 ENSGALG00000019719 1002.54 8069.42 keratin 19 [Source:NCBI gene;Acc:395861]
14. TTR ENSGALG00000015143 928.28 7471.71 transthyretin [Source:NCBI gene;Acc:396277]
15. PPIA ENSGALG00000028600 779.75 6276.19 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. LUM ENSGALG00000011271 594.10 4781.90 lumican [Source:NCBI gene;Acc:417891]
17. NME2 ENSGALG00000002932 556.97 4483.04 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
18. S100A11 ENSGALG00000036711 556.97 4483.04 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
19. RPL26 RPL26 519.84 4184.18
20. NDUFB9 ENSGALG00000042242 482.71 3885.32 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
21. RPL5 ENSGALG00000005922 482.71 3885.32 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPL7 ENSGALG00000035252 482.71 3885.32 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
23. RPS20 ENSGALG00000014432 482.71 3885.32 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
24. ENSGALG00000018384 ENSGALG00000018384 445.57 3586.38
25. RPL8 ENSGALG00000016232 445.57 3586.38 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPS15 ENSGALG00000015195 445.57 3586.38 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
27. MT-ND2 MT-ND2 408.44 3287.52
28. STMN1 ENSGALG00000001475 408.44 3287.52 stathmin 1 [Source:NCBI gene;Acc:396057]
29. ANXA2 ENSGALG00000003770 371.31 2988.67 annexin A2 [Source:NCBI gene;Acc:396297]
30. CRHOA CRHOA 371.31 2988.67
31. EIF4G2 ENSGALG00000005587 371.31 2988.67 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
32. ENO1 ENSGALG00000002377 371.31 2988.67 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
33. HBG1 HBG1 371.31 2988.67
34. RPL7A ENSGALG00000003197 371.31 2988.67 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS23 ENSGALG00000015617 371.31 2988.67 ribosomal protein S23
36. RPS3 ENSGALG00000017330 371.31 2988.67 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
37. MDK ENSGALG00000008367 334.18 2689.81 midkine [Source:NCBI gene;Acc:423196]
38. RPL21 ENSGALG00000027035 334.18 2689.81 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPS11 ENSGALG00000017299 334.18 2689.81 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
40. RPS7 ENSGALG00000016392 334.18 2689.81 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
41. TUBB2B ENSGALG00000012821 334.18 2689.81 tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
42. EEF1B2 ENSGALG00000008590 297.05 2390.95 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. HMGN5 ENSGALG00000007131 297.05 2390.95 high mobility group nucleosome binding domain 5, transcript variant X1
44. LDHB ENSGALG00000035836 297.05 2390.95 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
45. RPL31 ENSGALG00000016775 297.05 2390.95 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
46. RPL32 ENSGALG00000027142 297.05 2390.95 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
47. RPL38 ENSGALG00000001465 297.05 2390.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
48. RPL6 ENSGALG00000004818 297.05 2390.95 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. SLC25A6 ENSGALG00000016691 297.05 2390.95 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
50. SLC25A6_1 ENSGALG00000016691 297.05 2390.95 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. TPT1 ENSGALG00000028872 297.05 2390.95 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
52. CCNB2 ENSGALG00000004161 259.92 2092.09 cyclin B2 [Source:NCBI gene;Acc:415400]
53. EIF4EBP1 ENSGALG00000003205 259.92 2092.09 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
54. ENSGALG00000001854 ENSGALG00000001854 259.92 2092.09
55. GNG5 ENSGALG00000027561 259.92 2092.09 G protein subunit gamma 5 [Source:NCBI gene;Acc:424538]
56. HBZ ENSGALG00000023740 259.92 2092.09 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
57. RPS10 ENSGALG00000002813 259.92 2092.09 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
58. RPS16 ENSGALG00000026490 259.92 2092.09 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
59. RPS27A ENSGALG00000036790 259.92 2092.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
60. RPS6 ENSGALG00000015082 259.92 2092.09 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
61. APOA1 ENSGALG00000007114 222.79 1793.23 apolipoprotein A1 [Source:NCBI gene;Acc:396536]
62. ATP6V1G1 ENSGALG00000007190 222.79 1793.23 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
63. CNN3 ENSGALG00000005597 222.79 1793.23 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
64. CWC15 ENSGALG00000017207 222.79 1793.23 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
65. DSTN ENSGALG00000008667 222.79 1793.23 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
66. H3-IX H3-IX 222.79 1793.23
67. HBE 222.79 1793.23 hemoglobin subunit epsilon
68. IGF2BP3 ENSGALG00000010961 222.79 1793.23 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
69. MAB21L2 222.79 1793.23 mab-21-like 2 (C. elegans)
70. MAPRE1 ENSGALG00000006657 222.79 1793.23 microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
71. PGK1 ENSGALG00000007936 222.79 1793.23 phosphoglycerate kinase 1 [Source:NCBI gene;Acc:395833]
72. PITX2 ENSGALG00000042492 222.79 1793.23 paired like homeodomain 2 [Source:NCBI gene;Acc:395862]
73. RPL13 ENSGALG00000006179 222.79 1793.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
74. RPL15 ENSGALG00000011290 222.79 1793.23 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
75. RPL18A 222.79 1793.23 ribosomal protein L18a
76. RPL27A ENSGALG00000005948 222.79 1793.23 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
77. RPL3 ENSGALG00000012172 222.79 1793.23 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
78. RPL36AL ENSGALG00000004952 222.79 1793.23 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
79. RPL4 ENSGALG00000007711 222.79 1793.23 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
80. RPS14 ENSGALG00000004588 222.79 1793.23 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
81. TF ENSGALG00000006453 222.79 1793.23 transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
82. TRAM1 ENSGALG00000041112 222.79 1793.23 translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
83. CDK1 ENSGALG00000003085 185.66 1494.37 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
84. CHKA ENSGALG00000036754 185.66 1494.37 choline kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]
85. COL1A2 ENSGALG00000009641 185.66 1494.37 collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
86. COX6A1 ENSGALG00000007205 185.66 1494.37 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
87. EIF4A3 ENSGALG00000008530 185.66 1494.37 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
88. ENSGALG00000022570 ENSGALG00000022570 185.66 1494.37
89. ENSGALG00000028992 ENSGALG00000028992 185.66 1494.37
90. GUCA2A ENSGALG00000027269 185.66 1494.37 guanylate cyclase activator 2A [Source:NCBI gene;Acc:419498]
91. H2AFZ ENSGALG00000014023 185.66 1494.37 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
92. HSPE1 ENSGALG00000009070 185.66 1494.37 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
93. MDH1 ENSGALG00000008858 185.66 1494.37 malate dehydrogenase 1 [Source:NCBI gene;Acc:421281]
94. PRDX1 ENSGALG00000010243 185.66 1494.37 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
95. PSMB2 ENSGALG00000026421 185.66 1494.37 proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
96. RPL12 ENSGALG00000008806 185.66 1494.37 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
97. RPL14 ENSGALG00000043379 185.66 1494.37 ribosomal protein L14
98. RPL23A ENSGALG00000003966 185.66 1494.37 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
99. RPL35A ENSGALG00000007611, ENSGALG00000041230 185.66 1494.37 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
100. RPL37A ENSGALG00000011472 185.66 1494.37 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA