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Experiment Chicken_E3_posterior_slice_2, section s7.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 9135.36 73529.22
2. MT-CO3 MT-CO3 8221.83 66176.35
3. MT-CYB MT-CYB 5481.22 44117.56
4. RPL5 ENSGALG00000005922 3654.14 29411.66 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
5. MT-ND5 MT-ND5 2740.61 22058.78
6. RAN ENSGALG00000002569 2740.61 22058.78 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
7. RPS7 ENSGALG00000016392 2740.61 22058.78 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
8. gga-mir-3527 gga-mir-3527 2740.61 22058.78
9. C15H12ORF49 C15H12ORF49 1827.07 14705.83
10. EEF1A EEF1A 1827.07 14705.83
11. ENSGALG00000002696 ENSGALG00000002696 1827.07 14705.83
12. MCM6 ENSGALG00000012348 1827.07 14705.83 minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
13. PPIA ENSGALG00000028600 1827.07 14705.83 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPL14 ENSGALG00000043379 1827.07 14705.83 ribosomal protein L14
15. gga-mir-3533 ENSGALG00000027736 1827.07 14705.83 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. ARHGAP32 ENSGALG00000043511 913.54 7352.95 Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
17. ATP5G3 913.54 7352.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
18. ATP6V0C ENSGALG00000009229 913.54 7352.95 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
19. ATP6V1C1 ENSGALG00000034099 913.54 7352.95 ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]
20. BTF3L4 ENSGALG00000010570 913.54 7352.95 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
21. C9orf64 ENSGALG00000012589 913.54 7352.95 chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
22. CCNYL1 ENSGALG00000008485 913.54 7352.95 cyclin Y like 1
23. CDCA4 ENSGALG00000011692 913.54 7352.95 cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
24. CNOT6 ENSGALG00000034316 913.54 7352.95 CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
25. CORO1C ENSGALG00000004901 913.54 7352.95 coronin 1C [Source:NCBI gene;Acc:416893]
26. COX6C ENSGALG00000035996 913.54 7352.95 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
27. CRHOA CRHOA 913.54 7352.95
28. CTBPL ENSGALG00000007642 913.54 7352.95 C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
29. CXCL12 ENSGALG00000041346 913.54 7352.95 C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
30. DAPK3 ENSGALG00000037733 913.54 7352.95 death-associated protein kinase 3, transcript variant X2
31. DHFR ENSGALG00000026757 913.54 7352.95 dihydrofolate reductase [Source:NCBI gene;Acc:427317]
32. DNAJC7 ENSGALG00000042796 913.54 7352.95 DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
33. EFTUD2 ENSGALG00000000988 913.54 7352.95 elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
34. EIF1B ENSGALG00000038646 913.54 7352.95 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
35. EIF2S3 ENSGALG00000016340 913.54 7352.95 eukaryotic translation initiation factor 2 subunit gamma [Source:NCBI gene;Acc:418597]
36. EIF3D ENSGALG00000012529 913.54 7352.95 eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
37. EIF5 ENSGALG00000011464 913.54 7352.95 eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
38. EMC6 ENSGALG00000026492 913.54 7352.95 ER membrane protein complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:28430]
39. ENSGALG00000026802 ENSGALG00000026802 913.54 7352.95
40. ENSGALG00000028992 ENSGALG00000028992 913.54 7352.95
41. FAM192A ENSGALG00000021473 913.54 7352.95 family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
42. FAT1 ENSGALG00000013579 913.54 7352.95 FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
43. G3BP2 ENSGALG00000010882 913.54 7352.95 G3BP stress granule assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:30291]
44. GPC1 ENSGALG00000040316 913.54 7352.95 glypican 1 [Source:NCBI gene;Acc:424770]
45. HDAC8 ENSGALG00000004825 913.54 7352.95 histone deacetylase 8, transcript variant X2
46. HNRNPH3 ENSGALG00000003947 913.54 7352.95 heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
47. HNRNPM ENSGALG00000000377 913.54 7352.95 heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:420054]
48. IFT20 ENSGALG00000005707 913.54 7352.95 intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
49. INTS4 ENSGALG00000000091 913.54 7352.95 integrator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:25048]
50. KRT19 ENSGALG00000019719 913.54 7352.95 keratin 19 [Source:NCBI gene;Acc:395861]
51. LRPAP1 ENSGALG00000015612 913.54 7352.95 LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
52. LRPPRC ENSGALG00000009967 913.54 7352.95 leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
53. LUM ENSGALG00000011271 913.54 7352.95 lumican [Source:NCBI gene;Acc:417891]
54. LZIC ENSGALG00000002616 913.54 7352.95 leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
55. MATR3 ENSGALG00000002478 913.54 7352.95 matrin 3 [Source:NCBI gene;Acc:373948]
56. MCM3 ENSGALG00000016676 913.54 7352.95 minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
57. MT-CO1 MT-CO1 913.54 7352.95
58. MT-ND2 MT-ND2 913.54 7352.95
59. MT-ND3 MT-ND3 913.54 7352.95
60. MT-ND4 MT-ND4 913.54 7352.95
61. MT-ND6 MT-ND6 913.54 7352.95
62. NCKAP1 ENSGALG00000002750 913.54 7352.95 NCK associated protein 1 [Source:HGNC Symbol;Acc:HGNC:7666]
63. NME2 ENSGALG00000002932 913.54 7352.95 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
64. NUDT21 ENSGALG00000003084 913.54 7352.95 nudix hydrolase 21 [Source:NCBI gene;Acc:100858636]
65. NUDT7 ENSGALG00000034395 913.54 7352.95 nudix hydrolase 7 [Source:NCBI gene;Acc:415800]
66. PDLIM4 ENSGALG00000039872 913.54 7352.95 PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]
67. PPIG ENSGALG00000009839 913.54 7352.95 peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
68. PSME3 ENSGALG00000002937 913.54 7352.95 proteasome activator subunit 3 [Source:NCBI gene;Acc:420017]
69. PUS1 ENSGALG00000002354 913.54 7352.95 pseudouridylate synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]
70. RAB12 ENSGALG00000033608 913.54 7352.95 RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
71. RAP1B ENSGALG00000009927 913.54 7352.95 RAP1B, member of RAS oncogene family [Source:NCBI gene;Acc:417840]
72. RGP1 ENSGALG00000002394 913.54 7352.95 RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
73. RNF141 ENSGALG00000029586 913.54 7352.95 ring finger protein 141 [Source:NCBI gene;Acc:423039]
74. RPL15 ENSGALG00000011290 913.54 7352.95 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
75. RPL27 ENSGALG00000002837 913.54 7352.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
76. RPL3 ENSGALG00000012172 913.54 7352.95 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
77. RPS11 ENSGALG00000017299 913.54 7352.95 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
78. RPS21 ENSGALG00000005338 913.54 7352.95 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
79. SLC16A1 ENSGALG00000001717 913.54 7352.95 solute carrier family 16 member 1 [Source:NCBI gene;Acc:419875]
80. SLC9A3R1 ENSGALG00000007650 913.54 7352.95 SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
81. SMARCE1 ENSGALG00000003882 913.54 7352.95 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]
82. STMN1 ENSGALG00000001475 913.54 7352.95 stathmin 1 [Source:NCBI gene;Acc:396057]
83. SUB1 ENSGALG00000003248 913.54 7352.95 SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
84. SUMO2 ENSGALG00000007971 913.54 7352.95 small ubiquitin-like modifier 2 [Source:NCBI gene;Acc:770125]
85. Sep-06 Sep-06 913.54 7352.95
86. TCEB1 TCEB1 913.54 7352.95
87. TMEM18 ENSGALG00000028744 913.54 7352.95 transmembrane protein 18 [Source:NCBI gene;Acc:421911]
88. TOMM5 ENSGALG00000026300 913.54 7352.95 translocase of outer mitochondrial membrane 5
89. U2AF1 ENSGALG00000016198 913.54 7352.95 U2 small nuclear RNA auxiliary factor 1 [Source:NCBI gene;Acc:395370]
90. UBE2L3 ENSGALG00000036739 913.54 7352.95 ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
91. USPL1 ENSGALG00000017079 913.54 7352.95 ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
92. VHL ENSGALG00000028009 913.54 7352.95 von Hippel-Lindau tumor suppressor, transcript variant X1
93. VSX1 ENSGALG00000037576 913.54 7352.95 visual system homeobox 1 [Source:NCBI gene;Acc:395537]
94. WDHD1 ENSGALG00000012199 913.54 7352.95 WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
95. ZEB1 ENSGALG00000007260 913.54 7352.95 zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
96. ZNF644 ENSGALG00000034253 913.54 7352.95 zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
97. 5 5 0.00 0.00
98. 5-MCDG 5-MCDG 0.00 0.00
99. 5S 5S 0.00 0.00
100. 5S_1 5S_1 0.00 0.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA