Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s6.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 6110.21 49180.28
2. MT-CO3 MT-CO3 5091.84 40983.55
3. RPL27A ENSGALG00000005948 5091.84 40983.55 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
4. MT-CYB MT-CYB 4073.47 32786.82
5. ATP6V0C ENSGALG00000009229 3055.10 24590.10 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
6. EEF1A EEF1A 3055.10 24590.10
7. MLF2 ENSGALG00000014468 3055.10 24590.10 myeloid leukemia factor 2 [Source:NCBI gene;Acc:418284]
8. FKBP25 FKBP25 2036.74 16393.45
9. RPL5 ENSGALG00000005922 2036.74 16393.45 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
10. RPS23 ENSGALG00000015617 2036.74 16393.45 ribosomal protein S23
11. RPS6 ENSGALG00000015082 2036.74 16393.45 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
12. SEC62 ENSGALG00000009379 2036.74 16393.45 SEC62 homolog, preprotein translocation factor [Source:NCBI gene;Acc:424993]
13. TAX1BP3 ENSGALG00000004618 2036.74 16393.45 Tax1 binding protein 3 [Source:HGNC Symbol;Acc:HGNC:30684]
14. gga-mir-3527 gga-mir-3527 2036.74 16393.45
15. ALDH1A2 ENSGALG00000004270 1018.37 8196.73 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
16. ANP32E ENSGALG00000039891 1018.37 8196.73 acidic nuclear phosphoprotein 32 family member E [Source:NCBI gene;Acc:426109]
17. ARL14EP ENSGALG00000012139 1018.37 8196.73 ADP ribosylation factor like GTPase 14 effector protein [Source:NCBI gene;Acc:421605]
18. ARMC1 ENSGALG00000036567 1018.37 8196.73 armadillo repeat containing 1 [Source:NCBI gene;Acc:429406]
19. ATP6V1G1 ENSGALG00000007190 1018.37 8196.73 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
20. BMP7 ENSGALG00000007668 1018.37 8196.73 bone morphogenetic protein 7 [Source:HGNC Symbol;Acc:HGNC:1074]
21. BTF3L4 ENSGALG00000010570 1018.37 8196.73 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
22. C5orf22 ENSGALG00000012909 1018.37 8196.73 chromosome 5 open reading frame 22 [Source:HGNC Symbol;Acc:HGNC:25639]
23. CAPZB ENSGALG00000004034 1018.37 8196.73 capping actin protein of muscle Z-line beta subunit [Source:NCBI gene;Acc:396418]
24. CDC42SE1 ENSGALG00000028119 1018.37 8196.73 CDC42 small effector 1 [Source:HGNC Symbol;Acc:HGNC:17719]
25. CDK1 ENSGALG00000003085 1018.37 8196.73 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
26. CNN3 ENSGALG00000005597 1018.37 8196.73 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
27. COX6C ENSGALG00000035996 1018.37 8196.73 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
28. COX7B ENSGALG00000007863 1018.37 8196.73 cytochrome c oxidase subunit 7B [Source:NCBI gene;Acc:771947]
29. D1A D1A 1018.37 8196.73
30. EIF3E ENSGALG00000037067 1018.37 8196.73 eukaryotic translation initiation factor 3 subunit E [Source:NCBI gene;Acc:420272]
31. EIF3F ENSGALG00000005326 1018.37 8196.73 eukaryotic translation initiation factor 3 subunit F
32. ELP3 ENSGALG00000016624 1018.37 8196.73 elongator acetyltransferase complex subunit 3 [Source:NCBI gene;Acc:422021]
33. ENO1 ENSGALG00000002377 1018.37 8196.73 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
34. ENSGALG00000002696 ENSGALG00000002696 1018.37 8196.73
35. EPCAM ENSGALG00000008969 1018.37 8196.73 epithelial cell adhesion molecule [Source:NCBI gene;Acc:421292]
36. FAM72A ENSGALG00000000791 1018.37 8196.73 family with sequence similarity 72 member A, transcript variant X1
37. FKBP4 ENSGALG00000014331 1018.37 8196.73 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
38. GAPDH ENSGALG00000014442 1018.37 8196.73 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
39. GDI2 ENSGALG00000008169 1018.37 8196.73 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
40. GRSF1 1018.37 8196.73 G-rich RNA sequence binding factor 1, transcript variant X2
41. H3-IX H3-IX 1018.37 8196.73
42. HINT3 ENSGALG00000044342 1018.37 8196.73 histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:HGNC:18468]
43. HSD17B4 ENSGALG00000002187 1018.37 8196.73 hydroxysteroid 17-beta dehydrogenase 4 [Source:NCBI gene;Acc:395785]
44. HSP90B1 ENSGALG00000033789 1018.37 8196.73 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
45. HSPD1 ENSGALG00000008094 1018.37 8196.73 heat shock protein family D (Hsp60) member 1 [Source:NCBI gene;Acc:424059]
46. IRX2 ENSGALG00000013193 1018.37 8196.73 iroquois homeobox 2 [Source:NCBI gene;Acc:373975]
47. ISY1 ENSGALG00000005012 1018.37 8196.73 ISY1 splicing factor homolog
48. ITGB1BP3 ENSGALG00000030120 1018.37 8196.73 integrin beta 1 binding protein 3 [Source:NCBI gene;Acc:415448]
49. MAP3K4 ENSGALG00000020003 1018.37 8196.73 mitogen-activated protein kinase kinase kinase 4 [Source:HGNC Symbol;Acc:HGNC:6856]
50. MDH2 ENSGALG00000001949 1018.37 8196.73 malate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6971]
51. MIF ENSGALG00000006326 1018.37 8196.73 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
52. MT-ND1 MT-ND1 1018.37 8196.73
53. MT-ND2 MT-ND2 1018.37 8196.73
54. MT-ND4 MT-ND4 1018.37 8196.73
55. MT-ND5 MT-ND5 1018.37 8196.73
56. MTRR ENSGALG00000039424 1018.37 8196.73 5-methyltetrahydrofolate-homocysteine methyltransferase reductase [Source:HGNC Symbol;Acc:HGNC:7473]
57. NAE1 ENSGALG00000038957 1018.37 8196.73 NEDD8 activating enzyme E1 subunit 1 [Source:NCBI gene;Acc:415792]
58. NCKAP1 ENSGALG00000002750 1018.37 8196.73 NCK associated protein 1 [Source:HGNC Symbol;Acc:HGNC:7666]
59. NMD3 ENSGALG00000009533 1018.37 8196.73 NMD3 ribosome export adaptor [Source:HGNC Symbol;Acc:HGNC:24250]
60. NME2 ENSGALG00000002932 1018.37 8196.73 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
61. NONO ENSGALG00000005507 1018.37 8196.73 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
62. PARVB ENSGALG00000014201 1018.37 8196.73 parvin beta [Source:HGNC Symbol;Acc:HGNC:14653]
63. PDAP1 ENSGALG00000036552 1018.37 8196.73 PDGFA associated protein 1 [Source:HGNC Symbol;Acc:HGNC:14634]
64. PNRC1 ENSGALG00000015780 1018.37 8196.73 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
65. POLR2L ENSGALG00000006841 1018.37 8196.73 RNA polymerase II subunit L [Source:NCBI gene;Acc:770704]
66. PPIA ENSGALG00000028600 1018.37 8196.73 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
67. PPP2R3B ENSGALG00000016702 1018.37 8196.73 protein phosphatase 2 regulatory subunit B''beta, transcript variant X5
68. PSIP1 ENSGALG00000015105 1018.37 8196.73 PC4 and SFRS1 interacting protein 1 [Source:NCBI gene;Acc:431605]
69. PTRHD1 ENSGALG00000016610 1018.37 8196.73 peptidyl-tRNA hydrolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:33782]
70. PURH PURH 1018.37 8196.73
71. RAN ENSGALG00000002569 1018.37 8196.73 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
72. RBM38 ENSGALG00000026081 1018.37 8196.73 RNA binding motif protein 38 [Source:NCBI gene;Acc:768866]
73. RBM5 1018.37 8196.73 RNA binding motif protein 5, transcript variant X1
74. RPL13 ENSGALG00000006179 1018.37 8196.73 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
75. RPL38 ENSGALG00000001465 1018.37 8196.73 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
76. RPL4 ENSGALG00000007711 1018.37 8196.73 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
77. RPL7A ENSGALG00000003197 1018.37 8196.73 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
78. RPLP1 ENSGALG00000030878 1018.37 8196.73 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
79. RPS13 ENSGALG00000006096 1018.37 8196.73 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
80. RPS20 ENSGALG00000014432 1018.37 8196.73 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
81. RPS24 ENSGALG00000004871 1018.37 8196.73 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
82. SNRPG ENSGALG00000028409 1018.37 8196.73 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. SUMO3 ENSGALG00000032783 1018.37 8196.73 small ubiquitin-like modifier 3 [Source:NCBI gene;Acc:770553]
84. SUPT4H1 ENSGALG00000000944 1018.37 8196.73 SPT4 homolog, DSIF elongation factor subunit [Source:NCBI gene;Acc:417470]
85. TFAM ENSGALG00000002703 1018.37 8196.73 transcription factor A, mitochondrial [Source:NCBI gene;Acc:373888]
86. TPT1 ENSGALG00000028872 1018.37 8196.73 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
87. TSPAN3 ENSGALG00000002774 1018.37 8196.73 tetraspanin 3 [Source:NCBI gene;Acc:415348]
88. TYMS ENSGALG00000014897 1018.37 8196.73 thymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]
89. UBLCP1 ENSGALG00000003672 1018.37 8196.73 ubiquitin like domain containing CTD phosphatase 1 [Source:NCBI gene;Acc:416237]
90. VHL ENSGALG00000028009 1018.37 8196.73 von Hippel-Lindau tumor suppressor, transcript variant X1
91. ZFP91 ENSGALG00000007287 1018.37 8196.73 ZFP91 zinc finger protein
92. ZWILCH ENSGALG00000007736 1018.37 8196.73 zwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]
93. gga-mir-3533 ENSGALG00000027736 1018.37 8196.73 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
94. 5 5 0.00 0.00
95. 5-MCDG 5-MCDG 0.00 0.00
96. 5S 5S 0.00 0.00
97. 5S_1 5S_1 0.00 0.00
98. 5S_2 5S_2 0.00 0.00
99. 7SK 7SK 0.00 0.00
100. 7SK_1 7SK_1 0.00 0.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA