Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s4.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AP2M1 ENSGALG00000008432 2760.91 22222.28 adaptor related protein complex 2 mu 1 subunit [Source:NCBI gene;Acc:770246]
2. EEF1A EEF1A 2760.91 22222.28
3. ENSGALG00000021694 ENSGALG00000021694 2760.91 22222.28
4. GAPDH ENSGALG00000014442 2760.91 22222.28 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
5. MT-ATP6 MT-ATP6 2760.91 22222.28
6. MT-ND1 MT-ND1 2760.91 22222.28
7. MT-ND4 MT-ND4 2760.91 22222.28
8. RPL26 RPL26 2760.91 22222.28
9. SDC1 ENSGALG00000016480 2760.91 22222.28 syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
10. gga-mir-3527 gga-mir-3527 2760.91 22222.28
11. AHCY ENSGALG00000033677 1380.45 11111.10 adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
12. ANP32B ENSGALG00000037483 1380.45 11111.10 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
13. ANP32E ENSGALG00000039891 1380.45 11111.10 acidic nuclear phosphoprotein 32 family member E [Source:NCBI gene;Acc:426109]
14. ARCN1 ENSGALG00000007430 1380.45 11111.10 archain 1 [Source:NCBI gene;Acc:770561]
15. ATF4 ENSGALG00000012135 1380.45 11111.10 activating transcription factor 4 [Source:NCBI gene;Acc:395693]
16. AURKAIP1 ENSGALG00000001555 1380.45 11111.10 aurora kinase A interacting protein 1 [Source:NCBI gene;Acc:419415]
17. BRT-1 BRT-1 1380.45 11111.10
18. C1H21ORF33 ENSGALG00000019171 1380.45 11111.10 chromosome 1 open reading frame, human C21orf33 [Source:NCBI gene;Acc:418552]
19. C1QTNF3 ENSGALG00000027887 1380.45 11111.10 C1q and tumor necrosis factor related protein 3, transcript variant X1
20. CBX3 ENSGALG00000011038 1380.45 11111.10 chromobox 3 [Source:NCBI gene;Acc:395355]
21. CHMP4B ENSGALG00000002095 1380.45 11111.10 charged multivesicular body protein 4B [Source:NCBI gene;Acc:419150]
22. CWC15 ENSGALG00000017207 1380.45 11111.10 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
23. DHX36 ENSGALG00000043082 1380.45 11111.10 DEAH-box helicase 36 [Source:HGNC Symbol;Acc:HGNC:14410]
24. DNMT3B ENSGALG00000041461 1380.45 11111.10 DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
25. DSTN ENSGALG00000008667 1380.45 11111.10 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
26. DYNLRB1 ENSGALG00000034509 1380.45 11111.10 dynein light chain roadblock-type 1
27. ECE-1 ECE-1 1380.45 11111.10
28. EEF1B2 ENSGALG00000008590 1380.45 11111.10 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
29. EEF1E1 ENSGALG00000012781 1380.45 11111.10 eukaryotic translation elongation factor 1 epsilon 1
30. EIF4EBP1 ENSGALG00000003205 1380.45 11111.10 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
31. ENO1 ENSGALG00000002377 1380.45 11111.10 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
32. ENSGALG00000001861 ENSGALG00000001861 1380.45 11111.10
33. FN1 ENSGALG00000003578 1380.45 11111.10 fibronectin 1 [Source:NCBI gene;Acc:396133]
34. GBX-1 GBX-1 1380.45 11111.10
35. H2AFZ ENSGALG00000014023 1380.45 11111.10 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
36. HMBS ENSGALG00000042939 1380.45 11111.10 hydroxymethylbilane synthase [Source:HGNC Symbol;Acc:HGNC:4982]
37. HMGN5 ENSGALG00000007131 1380.45 11111.10 high mobility group nucleosome binding domain 5, transcript variant X1
38. HSPA14 ENSGALG00000035201 1380.45 11111.10 heat shock protein family A (Hsp70) member 14
39. HSPA5 ENSGALG00000001000 1380.45 11111.10 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
40. KIAA0922 1380.45 11111.10 KIAA0922, transcript variant X4
41. KIF2A ENSGALG00000014737 1380.45 11111.10 kinesin heavy chain member 2A [Source:NCBI gene;Acc:427156]
42. MAPKAPK2 ENSGALG00000000883 1380.45 11111.10 mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
43. MRPS27 ENSGALG00000015002 1380.45 11111.10 mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
44. MT-CYB MT-CYB 1380.45 11111.10
45. MT-ND6 MT-ND6 1380.45 11111.10
46. MTX2 ENSGALG00000009264 1380.45 11111.10 metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
47. NAP1L4 ENSGALG00000006446 1380.45 11111.10 nucleosome assembly protein 1 like 4 [Source:NCBI gene;Acc:423087]
48. NONO ENSGALG00000005507 1380.45 11111.10 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
49. NSA2 ENSGALG00000014942 1380.45 11111.10 NSA2, ribosome biogenesis homolog [Source:NCBI gene;Acc:427206]
50. NUCKS1 ENSGALG00000000708 1380.45 11111.10 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
51. PIK3C2B ENSGALG00000037043 1380.45 11111.10 phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
52. PPIA ENSGALG00000028600 1380.45 11111.10 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
53. PRRC2B 1380.45 11111.10 proline rich coiled-coil 2B, transcript variant X12
54. PRRX1 ENSGALG00000003324 1380.45 11111.10 paired related homeobox 1 [Source:NCBI gene;Acc:373941]
55. PSMA7 ENSGALG00000030411 1380.45 11111.10 proteasome subunit alpha 7 [Source:NCBI gene;Acc:395318]
56. PUM2 ENSGALG00000016481 1380.45 11111.10 pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
57. RAP1GDS1 ENSGALG00000012222 1380.45 11111.10 rap1 GTPase-GDP dissociation stimulator 1 [Source:NCBI gene;Acc:422701]
58. RPL13 ENSGALG00000006179 1380.45 11111.10 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
59. RPL19 ENSGALG00000001658 1380.45 11111.10 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
60. RPL23 ENSGALG00000001634 1380.45 11111.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
61. RPL27 ENSGALG00000002837 1380.45 11111.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
62. RPL36 ENSGALG00000000474 1380.45 11111.10 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
63. RPL39 ENSGALG00000008620 1380.45 11111.10 ribosomal protein L39 [Source:NCBI gene;Acc:374132]
64. RPL8 ENSGALG00000016232 1380.45 11111.10 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
65. RPS11 ENSGALG00000017299 1380.45 11111.10 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
66. RPS14 ENSGALG00000004588 1380.45 11111.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
67. RPS15A ENSGALG00000006771 1380.45 11111.10 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
68. RPS3 ENSGALG00000017330 1380.45 11111.10 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
69. RPS8 ENSGALG00000010124 1380.45 11111.10 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
70. SIAH1 ENSGALG00000003916 1380.45 11111.10 siah E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:10857]
71. SNRPD3 ENSGALG00000006596 1380.45 11111.10 small nuclear ribonucleoprotein D3 polypeptide [Source:NCBI gene;Acc:416947]
72. TDP2 ENSGALG00000013637 1380.45 11111.10 tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
73. THBS4 ENSGALG00000014804 1380.45 11111.10 Gallus gallus thrombospondin 4 (THBS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001321549]
74. TRA2B ENSGALG00000006531 1380.45 11111.10 transformer 2 beta homolog (Drosophila) [Source:NCBI gene;Acc:395403]
75. TUSC3 ENSGALG00000013674 1380.45 11111.10 tumor suppressor candidate 3 [Source:HGNC Symbol;Acc:HGNC:30242]
76. UBE2C ENSGALG00000026380 1380.45 11111.10 ubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]
77. UTP14A ENSGALG00000024039 1380.45 11111.10 UTP14A small subunit processome component
78. WDYHV1 ENSGALG00000030059 1380.45 11111.10 WDYHV motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25490]
79. YTHDF2 ENSGALG00000034831 1380.45 11111.10 YTH N6-methyladenosine RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:31675]
80. gga-mir-762 ENSGALG00000025437 1380.45 11111.10 gga-mir-762 [Source:miRBase;Acc:MI0008209]
81. 5 5 0.00 0.00
82. 5-MCDG 5-MCDG 0.00 0.00
83. 5S 5S 0.00 0.00
84. 5S_1 5S_1 0.00 0.00
85. 5S_2 5S_2 0.00 0.00
86. 7SK 7SK 0.00 0.00
87. 7SK_1 7SK_1 0.00 0.00
88. 7SK_2 7SK_2 0.00 0.00
89. A1CF ENSGALG00000003765 0.00 0.00 APOBEC1 complementation factor [Source:HGNC Symbol;Acc:HGNC:24086]
90. A2ML2 ENSGALG00000014252 0.00 0.00 alpha-2-macroglobulin-like 2, transcript variant X6
91. A4GNT ENSGALG00000006600 0.00 0.00 alpha-1,4-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:17968]
92. AACS ENSGALG00000002899 0.00 0.00 acetoacetyl-CoA synthetase [Source:NCBI gene;Acc:416811]
93. AADAC ENSGALG00000010364 0.00 0.00 arylacetamide deacetylase [Source:HGNC Symbol;Acc:HGNC:17]
94. AADAT ENSGALG00000009655 0.00 0.00 aminoadipate aminotransferase [Source:HGNC Symbol;Acc:HGNC:17929]
95. AAED1 0.00 0.00 AhpC/TSA antioxidant enzyme domain containing 1
96. AAGAB ENSGALG00000007887 0.00 0.00 alpha- and gamma-adaptin binding protein [Source:NCBI gene;Acc:415553]
97. AAK1 ENSGALG00000041911 0.00 0.00 AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
98. AAMP ENSGALG00000011445 0.00 0.00 angio associated migratory cell protein [Source:NCBI gene;Acc:769880]
99. AANAT ENSGALG00000001955 0.00 0.00 aralkylamine N-acetyltransferase [Source:NCBI gene;Acc:396066]
100. AARS ENSGALG00000001965 0.00 0.00 alanyl-tRNA synthetase [Source:NCBI gene;Acc:415668]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA