Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s7.

Sample reads: 113,969. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPS23 ENSGALG00000015617 1788.04 15689.12 ribosomal protein S23
2. RPS21 ENSGALG00000005338 1597.10 14013.72 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
3. EEF1A EEF1A 1466.85 12870.85
4. MT-CO3 MT-CO3 1428.92 12538.03
5. RPL23A ENSGALG00000003966 1421.33 12471.43 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
6. CIRBP ENSGALG00000030918 1196.24 10496.39 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
7. RPL27 ENSGALG00000002837 1150.72 10096.97 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1033.12 9065.09 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPL36 ENSGALG00000000474 988.86 8676.73 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
10. RPL29 ENSGALG00000026978 935.75 8210.72 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
11. RPL14 ENSGALG00000043379 853.56 7489.55 ribosomal protein L14
12. RPL27A ENSGALG00000005948 832.06 7300.89 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
13. SNRPD1 ENSGALG00000041334 786.54 6901.48 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
14. RPS8 ENSGALG00000010124 747.34 6557.52 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPL23 ENSGALG00000001634 728.37 6391.07 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
16. RPS15A ENSGALG00000006771 720.78 6324.47 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
17. TXN ENSGALG00000015704 713.19 6257.87 thioredoxin [Source:NCBI gene;Acc:396437]
18. TCEB3 ENSGALG00000034625 667.67 5858.46 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
19. gga-mir-3527 gga-mir-3527 663.88 5825.20
20. RPL35 ENSGALG00000035677 646.17 5669.81 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
21. RPL13 ENSGALG00000006179 629.74 5525.64 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. RPL19 ENSGALG00000001658 553.86 4859.83 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL7A ENSGALG00000003197 526.04 4615.73 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. LDHB ENSGALG00000035836 519.72 4560.27 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
25. RPL31 ENSGALG00000016775 510.87 4482.62 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
26. RPL12 ENSGALG00000008806 507.08 4449.36 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
27. RPL36AL ENSGALG00000004952 507.08 4449.36 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
28. RPLP1 ENSGALG00000030878 504.55 4427.16 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
29. RPS11 ENSGALG00000017299 500.75 4393.82 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
30. RPL18A 452.70 3972.21 ribosomal protein L18a
31. RPL24 ENSGALG00000015339 442.59 3883.50 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
32. RPL32 ENSGALG00000027142 433.73 3805.76 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
33. RPL4 ENSGALG00000007711 428.68 3761.44 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
34. RPS10 ENSGALG00000002813 428.68 3761.44 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
35. RPL7 ENSGALG00000035252 410.97 3606.05 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
36. EEF1D 395.80 3472.94 eukaryotic translation elongation factor 1 delta, transcript variant X13
37. ENO1 ENSGALG00000002377 385.68 3384.14 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. ATP5G3 380.62 3339.74 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
39. FKBP4 ENSGALG00000014331 380.62 3339.74 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
40. RPS29 ENSGALG00000012229 373.04 3273.23 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. RPS4 RPS4 367.98 3228.83
42. RPS16 ENSGALG00000026490 366.71 3217.69 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. SSR1 ENSGALG00000012798 366.71 3217.69 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
44. PRDX1 ENSGALG00000010243 359.13 3151.18 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
45. RPL26 RPL26 359.13 3151.18
46. EIF5A2 ENSGALG00000009309 354.07 3106.78 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
47. H3-IX H3-IX 349.01 3062.38
48. RAN ENSGALG00000002569 349.01 3062.38 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
49. RPS12 ENSGALG00000013990 349.01 3062.38 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. RPS7 ENSGALG00000016392 346.48 3040.18 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. RPS27A ENSGALG00000036790 333.84 2929.27 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. RPL37 ENSGALG00000014833 323.72 2840.48 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. RPS2 ENSGALG00000005490 323.72 2840.48 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
54. TPT1 ENSGALG00000028872 319.93 2807.22 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
55. RPS24 ENSGALG00000004871 304.75 2674.02 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. EIF1 ENSGALG00000028517 303.49 2662.97 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
57. EIF4G2 ENSGALG00000005587 303.49 2662.97 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
58. SEC61G ENSGALG00000037863 300.96 2640.77 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
59. RPL37A ENSGALG00000011472 283.25 2485.37 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
60. RPS15 ENSGALG00000015195 276.93 2429.92 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
61. NME2 ENSGALG00000002932 269.34 2363.32 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
62. RPL38 ENSGALG00000001465 269.34 2363.32 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
63. HNRNPDL ENSGALG00000023199 268.08 2352.26 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
64. CRHOA CRHOA 263.02 2307.86
65. STMN1 ENSGALG00000001475 260.49 2285.66 stathmin 1 [Source:NCBI gene;Acc:396057]
66. ENSGALG00000002696 ENSGALG00000002696 255.43 2241.27
67. PPIA ENSGALG00000028600 255.43 2241.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
68. RPL5 ENSGALG00000005922 252.91 2219.15 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
69. RPS13 ENSGALG00000006096 249.11 2185.81 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. COX7C ENSGALG00000027963 246.58 2163.61 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
71. RPL15 ENSGALG00000011290 235.20 2063.76 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
72. RBF RBF 233.94 2052.70
73. MT-ND5 MT-ND5 232.67 2041.56
74. CHCHD2 ENSGALG00000002495 226.35 1986.10 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
75. HSPA8 ENSGALG00000006512 223.82 1963.90 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
76. RPL21 ENSGALG00000027035 223.82 1963.90 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
77. RPS25 ENSGALG00000007699 222.56 1952.85 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
78. ATP6V1G1 ENSGALG00000007190 218.76 1919.51 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
79. CCT4 ENSGALG00000008812 217.50 1908.45 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
80. CHPKCI CHPKCI 214.97 1886.25
81. HSPE1 ENSGALG00000009070 213.71 1875.19 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
82. EEF1B2 ENSGALG00000008590 209.91 1841.85 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
83. MT-CYB MT-CYB 209.91 1841.85
84. MT-ND4 MT-ND4 209.91 1841.85
85. SET ENSGALG00000004701 209.91 1841.85 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
86. H2AFZ ENSGALG00000014023 206.12 1808.60 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
87. ANP32B ENSGALG00000037483 202.32 1775.25 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. DYL1 ENSGALG00000007153 202.32 1775.25 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
89. MT-ATP6 MT-ATP6 199.80 1753.14
90. SLC25A6_1 ENSGALG00000016691 198.53 1742.00 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. NDUFA11 ENSGALG00000021692 197.27 1730.94 NADH:ubiquinone oxidoreductase subunit A11
92. HBG1 HBG1 196.00 1719.80
93. RPL8 ENSGALG00000016232 194.74 1708.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
94. UBB ENSGALG00000004509 190.94 1675.40 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
95. EIF5 ENSGALG00000011464 178.30 1564.49 eukaryotic translation initiation factor 5 [Source:NCBI gene;Acc:423479]
96. GNB2L1 ENSGALG00000000122 175.77 1542.29 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
97. RPS3 ENSGALG00000017330 174.50 1531.15 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
98. THOC7 ENSGALG00000007299 173.24 1520.09 THO complex 7 [Source:NCBI gene;Acc:416077]
99. TCP1 ENSGALG00000011637 170.71 1497.89 t-complex 1 [Source:NCBI gene;Acc:421586]
100. KPNA2 ENSGALG00000003584 169.45 1486.84 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA