Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s5.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 11126.05 89551.97
2. MT-ND4 MT-ND4 5563.03 44776.02
3. MT-ND5 MT-ND5 4821.29 38805.87
4. MT-CYB MT-CYB 2966.95 23880.55
5. MT-ND1 MT-ND1 2966.95 23880.55
6. EEF1A EEF1A 2596.08 20895.47
7. gga-mir-3527 gga-mir-3527 2596.08 20895.47
8. MT-CO3 MT-CO3 2225.21 17910.39
9. RPS6 ENSGALG00000015082 2225.21 17910.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
10. MT-CO1 MT-CO1 1854.34 14925.31
11. GAPDH ENSGALG00000014442 1483.47 11940.24 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. RPL15 ENSGALG00000011290 1483.47 11940.24 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. ATP6V0C ENSGALG00000009229 1112.61 8955.24 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
14. C15H12ORF49 C15H12ORF49 1112.61 8955.24
15. PPIA ENSGALG00000028600 1112.61 8955.24 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. STMN1 ENSGALG00000001475 1112.61 8955.24 stathmin 1 [Source:NCBI gene;Acc:396057]
17. DNAJC2 ENSGALG00000008249 741.74 5970.16 DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
18. MARCKSL1 ENSGALG00000032335 741.74 5970.16 MARCKS like 1 [Source:NCBI gene;Acc:770764]
19. MT-ND3 MT-ND3 741.74 5970.16
20. NDST2 ENSGALG00000005107 741.74 5970.16 N-deacetylase and N-sulfotransferase 2, transcript variant X2
21. NDUFB9 ENSGALG00000042242 741.74 5970.16 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
22. NSG1 ENSGALG00000015010 741.74 5970.16 neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
23. PKM ENSGALG00000001992 741.74 5970.16 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
24. RAE1 ENSGALG00000007653 741.74 5970.16 ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
25. RPL27 ENSGALG00000002837 741.74 5970.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. RPL37 ENSGALG00000014833 741.74 5970.16 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
27. RPL8 ENSGALG00000016232 741.74 5970.16 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
28. RPS10 ENSGALG00000002813 741.74 5970.16 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
29. RPS15 ENSGALG00000015195 741.74 5970.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
30. RPS29 ENSGALG00000012229 741.74 5970.16 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPS7 ENSGALG00000016392 741.74 5970.16 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. SEC61G ENSGALG00000037863 741.74 5970.16 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
33. SLC25A6_1 ENSGALG00000016691 741.74 5970.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
34. TMEM18 ENSGALG00000028744 741.74 5970.16 transmembrane protein 18 [Source:NCBI gene;Acc:421911]
35. TSSC4 ENSGALG00000006530 741.74 5970.16 tumor suppressing subtransferable candidate 4 [Source:NCBI gene;Acc:423092]
36. UQCRC2 ENSGALG00000002490 741.74 5970.16 ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
37. ABCC1 ENSGALG00000006646 370.87 2985.08 ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
38. ABCF2 ENSGALG00000034573 370.87 2985.08 ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
39. ACO1 ENSGALG00000002162 370.87 2985.08 aconitase 1, soluble [Source:NCBI gene;Acc:373916]
40. AGPAT3 ENSGALG00000031932 370.87 2985.08 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
41. AHCY ENSGALG00000033677 370.87 2985.08 adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
42. ATP5C1 370.87 2985.08 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
43. AZIN1 ENSGALG00000029295 370.87 2985.08 antizyme inhibitor 1 [Source:NCBI gene;Acc:420254]
44. BCL9 ENSGALG00000037655 370.87 2985.08 B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
45. BRP44L BRP44L 370.87 2985.08
46. BUB3 ENSGALG00000009681 370.87 2985.08 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
47. C4orf27 C4orf27 370.87 2985.08
48. C5ORF13 C5ORF13 370.87 2985.08
49. CCDC59 ENSGALG00000028648 370.87 2985.08 coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
50. CDC5L ENSGALG00000016704 370.87 2985.08 cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
51. CENPE ENSGALG00000013208 370.87 2985.08 centromere protein E, transcript variant X4
52. CLTA ENSGALG00000015326 370.87 2985.08 clathrin light chain A [Source:NCBI gene;Acc:427284]
53. CNN3 ENSGALG00000005597 370.87 2985.08 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
54. COX4I1 370.87 2985.08 cytochrome c oxidase subunit 4I1, transcript variant X1
55. COX5A ENSGALG00000014121 370.87 2985.08 cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
56. COX6C ENSGALG00000035996 370.87 2985.08 cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
57. CRABP-I ENSGALG00000003193 370.87 2985.08 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
58. CREPT CREPT 370.87 2985.08
59. CRHOA CRHOA 370.87 2985.08
60. CWC15 ENSGALG00000017207 370.87 2985.08 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
61. CWC22 ENSGALG00000009001 370.87 2985.08 CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
62. DCTN3 ENSGALG00000021365 370.87 2985.08 dynactin subunit 3 [Source:NCBI gene;Acc:427404]
63. DDX21 ENSGALG00000004144 370.87 2985.08 DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]
64. DUT ENSGALG00000038032 370.87 2985.08 deoxyuridine triphosphatase [Source:NCBI gene;Acc:769338]
65. EEF1B2 ENSGALG00000008590 370.87 2985.08 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
66. EEF2 ENSGALG00000033884 370.87 2985.08 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
67. EIF3E ENSGALG00000037067 370.87 2985.08 eukaryotic translation initiation factor 3 subunit E [Source:NCBI gene;Acc:420272]
68. EIF3H ENSGALG00000040522 370.87 2985.08 eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
69. EIF3L ENSGALG00000012296 370.87 2985.08 eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
70. EIF4A2 ENSGALG00000008684 370.87 2985.08 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
71. EIF4G2 ENSGALG00000005587 370.87 2985.08 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
72. ENSGALG00000000360 ENSGALG00000000360 370.87 2985.08
73. ENSGALG00000002696 ENSGALG00000002696 370.87 2985.08
74. ENSGALG00000018384 ENSGALG00000018384 370.87 2985.08
75. ENSGALG00000021397 ENSGALG00000021397 370.87 2985.08
76. ENSGALG00000026041 ENSGALG00000026041 370.87 2985.08
77. ENSGALG00000028649 ENSGALG00000028649 370.87 2985.08
78. EPB41L1 ENSGALG00000034171 370.87 2985.08 erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
79. EPFIP1L ENSGALG00000007683 370.87 2985.08 re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
80. ESRP2 ENSGALG00000003374 370.87 2985.08 epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
81. ETF1 ENSGALG00000002262 370.87 2985.08 eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
82. FAM98A ENSGALG00000010428 370.87 2985.08 family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
83. FKBP4 ENSGALG00000014331 370.87 2985.08 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. GNB2L1 ENSGALG00000000122 370.87 2985.08 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
85. GPI ENSGALG00000004956 370.87 2985.08 glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
86. H3-IX_1 H3-IX_1 370.87 2985.08
87. HBZ ENSGALG00000023740 370.87 2985.08 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
88. HMGB1 ENSGALG00000042875 370.87 2985.08 high mobility group box 1 [Source:NCBI gene;Acc:395724]
89. HMGB2 ENSGALG00000010745 370.87 2985.08 high mobility group box 2 [Source:NCBI gene;Acc:396482]
90. HMGB3 ENSGALG00000009071 370.87 2985.08 high mobility group box 3 [Source:NCBI gene;Acc:396232]
91. HMGN2 HMGN2 370.87 2985.08
92. HMGN5 ENSGALG00000007131 370.87 2985.08 high mobility group nucleosome binding domain 5, transcript variant X1
93. HNRNPA2B1 ENSGALG00000011036 370.87 2985.08 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
94. HNRNPA3 ENSGALG00000009250 370.87 2985.08 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
95. HOXA4 ENSGALG00000022622 370.87 2985.08 homeobox A4 [Source:NCBI gene;Acc:395307]
96. HOXB3 ENSGALG00000043219 370.87 2985.08 homeobox B3 [Source:NCBI gene;Acc:395502]
97. HTRA3 ENSGALG00000034673 370.87 2985.08 HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
98. HYOU1 ENSGALG00000007659 370.87 2985.08 hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
99. IBA57 ENSGALG00000005328 370.87 2985.08 IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
100. IGF2BP3 ENSGALG00000010961 370.87 2985.08 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA