Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s3.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 7156.73 57603.56
2. MT-ND4 MT-ND4 6584.20 52995.34
3. MT-CYB MT-CYB 4580.31 36866.30
4. MT-ND5 MT-ND5 4007.77 32258.00
5. gga-mir-3527 gga-mir-3527 3435.23 27649.70
6. MT-CO3 MT-CO3 3148.96 25345.56
7. MT-CO1 MT-CO1 2290.16 18433.19
8. MT-ND1 MT-ND1 1717.62 13824.89
9. MT-ND3 MT-ND3 1717.62 13824.89
10. PPIA ENSGALG00000028600 1717.62 13824.89 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
11. EEF1A EEF1A 1431.35 11520.74
12. RPL15 ENSGALG00000011290 1431.35 11520.74 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
13. gga-mir-3533 ENSGALG00000027736 1431.35 11520.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. GAPDH ENSGALG00000014442 1145.08 9216.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. NDUFB9 ENSGALG00000042242 1145.08 9216.60 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
16. RPL7A ENSGALG00000003197 1145.08 9216.60 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
17. CDC42 ENSGALG00000004796 858.81 6912.45 cell division cycle 42 [Source:NCBI gene;Acc:395917]
18. ENO1 ENSGALG00000002377 858.81 6912.45 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
19. ENSGALG00000002696 ENSGALG00000002696 858.81 6912.45
20. ENSGALG00000011687 ENSGALG00000011687 858.81 6912.45
21. LDHB ENSGALG00000035836 858.81 6912.45 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
22. MIF ENSGALG00000006326 858.81 6912.45 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
23. RPL18A 858.81 6912.45 ribosomal protein L18a
24. RPL24 ENSGALG00000015339 858.81 6912.45 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
25. RPL27A ENSGALG00000005948 858.81 6912.45 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. RPL5 ENSGALG00000005922 858.81 6912.45 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
27. RPS15A ENSGALG00000006771 858.81 6912.45 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
28. ACTG1 ENSGALG00000001381 572.54 4608.30 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
29. ATG5 ENSGALG00000015387 572.54 4608.30 autophagy related 5 [Source:NCBI gene;Acc:421784]
30. BTG1 ENSGALG00000011276 572.54 4608.30 BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
31. CCT4 ENSGALG00000008812 572.54 4608.30 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
32. CHCHD2 ENSGALG00000002495 572.54 4608.30 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
33. CIRBP ENSGALG00000030918 572.54 4608.30 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
34. COMMD8 ENSGALG00000026279 572.54 4608.30 COMM domain containing 8 [Source:NCBI gene;Acc:422769]
35. COPS4 ENSGALG00000011130 572.54 4608.30 COP9 signalosome subunit 4 [Source:NCBI gene;Acc:422594]
36. CRHOA CRHOA 572.54 4608.30
37. DDX21 ENSGALG00000004144 572.54 4608.30 DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]
38. DRAXIN ENSGALG00000004631 572.54 4608.30 dorsal inhibitory axon guidance protein [Source:NCBI gene;Acc:419492]
39. EAPP ENSGALG00000010007 572.54 4608.30 E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
40. EIF3E ENSGALG00000037067 572.54 4608.30 eukaryotic translation initiation factor 3 subunit E [Source:NCBI gene;Acc:420272]
41. ERH ENSGALG00000017384 572.54 4608.30 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
42. FH ENSGALG00000013165 572.54 4608.30 fumarate hydratase [Source:NCBI gene;Acc:420969]
43. FKBP4 ENSGALG00000014331 572.54 4608.30 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
44. HNRNPA3 ENSGALG00000009250 572.54 4608.30 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
45. HSPA8 ENSGALG00000006512 572.54 4608.30 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
46. LARP1 ENSGALG00000040109 572.54 4608.30 La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
47. MDK ENSGALG00000008367 572.54 4608.30 midkine [Source:NCBI gene;Acc:423196]
48. MKI67 ENSGALG00000025996 572.54 4608.30 marker of proliferation Ki-67, transcript variant X3
49. MT-ND2 MT-ND2 572.54 4608.30
50. NFASC ENSGALG00000031776 572.54 4608.30 neurofascin [Source:NCBI gene;Acc:419824]
51. NME2 ENSGALG00000002932 572.54 4608.30 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. OLA1 ENSGALG00000009325 572.54 4608.30 Obg like ATPase 1 [Source:NCBI gene;Acc:424144]
53. RPL21 ENSGALG00000027035 572.54 4608.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
54. RPL27 ENSGALG00000002837 572.54 4608.30 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. RPL7 ENSGALG00000035252 572.54 4608.30 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
56. RPS17 ENSGALG00000002157 572.54 4608.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
57. RPS20 ENSGALG00000014432 572.54 4608.30 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
58. RPS21 ENSGALG00000005338 572.54 4608.30 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
59. RPS23 ENSGALG00000015617 572.54 4608.30 ribosomal protein S23
60. RPS4 RPS4 572.54 4608.30
61. SIRT1 ENSGALG00000002761 572.54 4608.30 sirtuin 1 [Source:NCBI gene;Acc:423646]
62. TCP1 ENSGALG00000011637 572.54 4608.30 t-complex 1 [Source:NCBI gene;Acc:421586]
63. TXN ENSGALG00000015704 572.54 4608.30 thioredoxin [Source:NCBI gene;Acc:396437]
64. AATF ENSGALG00000005420 286.27 2304.15 apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
65. ADD3 ENSGALG00000008542 286.27 2304.15 adducin 3 (gamma) [Source:NCBI gene;Acc:373892]
66. AKAP1 ENSGALG00000005575 286.27 2304.15 A-kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:367]
67. ANP32B ENSGALG00000037483 286.27 2304.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. ANXA2 ENSGALG00000003770 286.27 2304.15 annexin A2 [Source:NCBI gene;Acc:396297]
69. ARHGDIB ENSGALG00000011738 286.27 2304.15 Rho GDP dissociation inhibitor beta [Source:NCBI gene;Acc:417941]
70. ARID4B ENSGALG00000034003 286.27 2304.15 AT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]
71. ATP2A2 ENSGALG00000032287 286.27 2304.15 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 [Source:NCBI gene;Acc:396446]
72. ATP5A1 ATP5A1 286.27 2304.15
73. ATP5G3 286.27 2304.15 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
74. ATP6V0C ENSGALG00000009229 286.27 2304.15 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
75. BAG4 ENSGALG00000003254 286.27 2304.15 BCL2 associated athanogene 4 [Source:HGNC Symbol;Acc:HGNC:940]
76. BLMH ENSGALG00000004259 286.27 2304.15 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
77. C20H20ORF24 ENSGALG00000001054 286.27 2304.15 chromosome 20 open reading frame, human C20orf24 [Source:NCBI gene;Acc:768550]
78. C5ORF13 C5ORF13 286.27 2304.15
79. CADM1 ENSGALG00000014582 286.27 2304.15 cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
80. CALM_1 CALM_1 286.27 2304.15
81. CAPZA2 ENSGALG00000043437 286.27 2304.15 capping actin protein of muscle Z-line alpha subunit 2 [Source:NCBI gene;Acc:417771]
82. CBWD1 ENSGALG00000010147 286.27 2304.15 COBW domain containing 1 [Source:NCBI gene;Acc:427347]
83. CCT5 ENSGALG00000013041 286.27 2304.15 chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
84. CDC42SE2 ENSGALG00000027258 286.27 2304.15 CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
85. CEP70 ENSGALG00000012087 286.27 2304.15 centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]
86. COIL ENSGALG00000003158 286.27 2304.15 coilin [Source:HGNC Symbol;Acc:HGNC:2184]
87. CPZ ENSGALG00000030209 286.27 2304.15 carboxypeptidase Z [Source:NCBI gene;Acc:395266]
88. CRHOB CRHOB 286.27 2304.15
89. CSNK1G1 ENSGALG00000030812 286.27 2304.15 casein kinase 1 gamma 1 [Source:NCBI gene;Acc:415328]
90. CTSZ ENSGALG00000007462 286.27 2304.15 cathepsin Z [Source:HGNC Symbol;Acc:HGNC:2547]
91. CWC15 ENSGALG00000017207 286.27 2304.15 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
92. CZH9ORF41 CZH9ORF41 286.27 2304.15
93. DDX18 ENSGALG00000012147 286.27 2304.15 DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
94. DDX3X ENSGALG00000016231 286.27 2304.15 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
95. DDX55 ENSGALG00000003298 286.27 2304.15 DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]
96. DHFR ENSGALG00000026757 286.27 2304.15 dihydrofolate reductase [Source:NCBI gene;Acc:427317]
97. DNAJC12 ENSGALG00000002769 286.27 2304.15 DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
98. DSTN ENSGALG00000008667 286.27 2304.15 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
99. DYNLRB1 ENSGALG00000034509 286.27 2304.15 dynein light chain roadblock-type 1
100. EFNB2 ENSGALG00000029175 286.27 2304.15 ephrin B2 [Source:NCBI gene;Acc:395625]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA