Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s2.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 9576.90 77082.72
2. MT-CYB MT-CYB 7765.06 62499.55
3. MT-ND4 MT-ND4 7506.22 60416.19
4. MT-ND5 MT-ND5 7506.22 60416.19
5. MT-CO1 MT-CO1 3106.02 24999.79
6. MT-CO3 MT-CO3 3106.02 24999.79
7. MT-ND1 MT-ND1 3106.02 24999.79
8. GAPDH ENSGALG00000014442 1811.85 14583.25 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. gga-mir-3527 gga-mir-3527 1553.01 12499.89
10. CRHOA CRHOA 1035.34 8333.26
11. LDHB ENSGALG00000035836 1035.34 8333.26 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
12. RPS8 ENSGALG00000010124 1035.34 8333.26 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. gga-mir-3533 ENSGALG00000027736 1035.34 8333.26 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. HNRNPDL ENSGALG00000023199 776.51 6249.99 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
15. HSP90AA1 ENSGALG00000033212 776.51 6249.99 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
16. KDM5B ENSGALG00000038948 776.51 6249.99 lysine demethylase 5B [Source:NCBI gene;Acc:421168]
17. MT-ND3 MT-ND3 776.51 6249.99
18. NME2 ENSGALG00000002932 776.51 6249.99 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
19. PPIA ENSGALG00000028600 776.51 6249.99 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RRM1 ENSGALG00000017350 776.51 6249.99 ribonucleotide reductase catalytic subunit M1 [Source:NCBI gene;Acc:419081]
21. TMSB4X ENSGALG00000026383 776.51 6249.99 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. ATP6V1G1 ENSGALG00000007190 517.67 4166.63 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
23. BRP44 BRP44 517.67 4166.63
24. CALM_1 CALM_1 517.67 4166.63
25. CCT5 ENSGALG00000013041 517.67 4166.63 chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
26. CDR2L ENSGALG00000026295 517.67 4166.63 cerebellar degeneration related protein 2 like [Source:HGNC Symbol;Acc:HGNC:29999]
27. CWC15 ENSGALG00000017207 517.67 4166.63 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
28. EEF1A EEF1A 517.67 4166.63
29. EFNB2 ENSGALG00000029175 517.67 4166.63 ephrin B2 [Source:NCBI gene;Acc:395625]
30. EIF4G2 ENSGALG00000005587 517.67 4166.63 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
31. ENSGALG00000002696 ENSGALG00000002696 517.67 4166.63
32. ENSGALG00000028649 ENSGALG00000028649 517.67 4166.63
33. HMGB2 ENSGALG00000010745 517.67 4166.63 high mobility group box 2 [Source:NCBI gene;Acc:396482]
34. MAP3K13 ENSGALG00000006655 517.67 4166.63 mitogen-activated protein kinase kinase kinase 13 [Source:HGNC Symbol;Acc:HGNC:6852]
35. PEBP1 ENSGALG00000007403 517.67 4166.63 phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
36. RBM15B 517.67 4166.63 RNA binding motif protein 15B
37. RBM5 517.67 4166.63 RNA binding motif protein 5, transcript variant X1
38. RPL23 ENSGALG00000001634 517.67 4166.63 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
39. RPL27 ENSGALG00000002837 517.67 4166.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
40. RPL31 ENSGALG00000016775 517.67 4166.63 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
41. RPL6 ENSGALG00000004818 517.67 4166.63 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
42. RPL7 ENSGALG00000035252 517.67 4166.63 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
43. RPLP1 ENSGALG00000030878 517.67 4166.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
44. RPS14 ENSGALG00000004588 517.67 4166.63 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
45. RPS27A ENSGALG00000036790 517.67 4166.63 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. RPS6 ENSGALG00000015082 517.67 4166.63 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
47. RSU1 ENSGALG00000040891 517.67 4166.63 Ras suppressor protein 1 [Source:NCBI gene;Acc:420524]
48. SUGT1 ENSGALG00000016946 517.67 4166.63 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:NCBI gene;Acc:418827]
49. TMEM167A ENSGALG00000027332 517.67 4166.63 transmembrane protein 167A [Source:NCBI gene;Acc:770790]
50. TPT1 ENSGALG00000028872 517.67 4166.63 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
51. TRAM1 ENSGALG00000041112 517.67 4166.63 translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
52. TUBB2B ENSGALG00000012821 517.67 4166.63 tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
53. TXN ENSGALG00000015704 517.67 4166.63 thioredoxin [Source:NCBI gene;Acc:396437]
54. ZRANB2 ENSGALG00000011340 517.67 4166.63 zinc finger RANBP2-type containing 2 [Source:NCBI gene;Acc:424717]
55. gga-mir-3526 ENSGALG00000029121 517.67 4166.63 gga-mir-3526 [Source:miRBase;Acc:MI0015377]
56. ACTG1 ENSGALG00000001381 258.84 2083.36 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
57. ACTR6 ENSGALG00000040976 258.84 2083.36 ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
58. ADSL ENSGALG00000012034 258.84 2083.36 adenylosuccinate lyase [Source:NCBI gene;Acc:396540]
59. AEN ENSGALG00000044204 258.84 2083.36 apoptosis enhancing nuclease, transcript variant X1
60. AIP ENSGALG00000040247 258.84 2083.36 aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
61. AKAP1 ENSGALG00000005575 258.84 2083.36 A-kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:367]
62. AKAP12 ENSGALG00000036240 258.84 2083.36 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
63. ALDH1A2 ENSGALG00000004270 258.84 2083.36 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
64. ANXA11 ENSGALG00000043826 258.84 2083.36 annexin A11 [Source:NCBI gene;Acc:423637]
65. ASPM ENSGALG00000032398 258.84 2083.36 abnormal spindle microtubule assembly [Source:HGNC Symbol;Acc:HGNC:19048]
66. ATP5F1 258.84 2083.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
67. ATP5G3 258.84 2083.36 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. B4GAL-T7 B4GAL-T7 258.84 2083.36
69. BAMBI ENSGALG00000040993 258.84 2083.36 BMP and activin membrane bound inhibitor [Source:NCBI gene;Acc:428413]
70. BCCIP ENSGALG00000006617 258.84 2083.36 BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]
71. BRCC3 ENSGALG00000005383 258.84 2083.36 BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
72. BTBD7 258.84 2083.36 BTB domain containing 7, transcript variant X2
73. BUB1 ENSGALG00000008233 258.84 2083.36 BUB1 mitotic checkpoint serine/threonine kinase [Source:NCBI gene;Acc:421226]
74. BUB3 ENSGALG00000009681 258.84 2083.36 BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
75. C5H14ORF166 C5H14ORF166 258.84 2083.36
76. C9orf89 C9orf89 258.84 2083.36
77. CCDC101 CCDC101 258.84 2083.36
78. CCNYL1 ENSGALG00000008485 258.84 2083.36 cyclin Y like 1
79. CDK1 ENSGALG00000003085 258.84 2083.36 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
80. CIRBP ENSGALG00000030918 258.84 2083.36 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
81. CISD2 ENSGALG00000027860 258.84 2083.36 CDGSH iron sulfur domain 2 [Source:HGNC Symbol;Acc:HGNC:24212]
82. CKAP5 ENSGALG00000008325 258.84 2083.36 cytoskeleton associated protein 5 [Source:NCBI gene;Acc:423190]
83. CLSPN ENSGALG00000002346 258.84 2083.36 claspin [Source:NCBI gene;Acc:428223]
84. CLTC ENSGALG00000005139 258.84 2083.36 clathrin heavy chain [Source:NCBI gene;Acc:395272]
85. CNBP 258.84 2083.36 CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
86. CNOT2 ENSGALG00000010042 258.84 2083.36 CCR4-NOT transcription complex subunit 2 [Source:NCBI gene;Acc:417851]
87. COL4A5 ENSGALG00000008141 258.84 2083.36 collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
88. COPA ENSGALG00000009153 258.84 2083.36 coatomer protein complex subunit alpha [Source:NCBI gene;Acc:426906]
89. COPB2 ENSGALG00000005357 258.84 2083.36 coatomer protein complex subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:2232]
90. COPG2 ENSGALG00000008144 258.84 2083.36 coatomer protein complex subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:2237]
91. CRIPT ENSGALG00000010014 258.84 2083.36 CXXC repeat containing interactor of PDZ3 domain [Source:NCBI gene;Acc:421412]
92. CSNK1E ENSGALG00000032257 258.84 2083.36 casein kinase 1 epsilon [Source:NCBI gene;Acc:378891]
93. DARS ENSGALG00000012355 258.84 2083.36 aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
94. DECR1 ENSGALG00000036990 258.84 2083.36 2,4-dienoyl-CoA reductase 1 [Source:HGNC Symbol;Acc:HGNC:2753]
95. DIABLO ENSGALG00000004412 258.84 2083.36 diablo IAP-binding mitochondrial protein, transcript variant X3
96. DNAJC7 ENSGALG00000042796 258.84 2083.36 DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
97. DRG1 ENSGALG00000006921 258.84 2083.36 developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
98. DYNC1LI1 ENSGALG00000011491 258.84 2083.36 dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
99. DYNLT1 ENSGALG00000019979 258.84 2083.36 dynein light chain Tctex-type 1 [Source:HGNC Symbol;Acc:HGNC:11697]
100. EEF1B2 ENSGALG00000008590 258.84 2083.36 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA