Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_3, section s1.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 6502.33 52336.07
2. MT-ATP6 MT-ATP6 5805.65 46728.62
3. MT-CO3 MT-CO3 4876.75 39252.07
4. MT-CYB MT-CYB 4180.07 33644.62
5. MT-ND4 MT-ND4 3715.62 29906.35
6. EEF1A EEF1A 1857.81 14953.18
7. ENO1 ENSGALG00000002377 1625.58 13084.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
8. PPIA ENSGALG00000028600 1625.58 13084.00 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. GAPDH ENSGALG00000014442 1393.36 11214.90 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-CO1 MT-CO1 1393.36 11214.90
11. gga-mir-3527 gga-mir-3527 1393.36 11214.90
12. KPNA2 ENSGALG00000003584 1161.13 9345.72 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
13. MT-ND1 MT-ND1 1161.13 9345.72
14. TMSB4X ENSGALG00000026383 1161.13 9345.72 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
15. gga-mir-3533 ENSGALG00000027736 1161.13 9345.72 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
16. EEF1D 928.90 7476.55 eukaryotic translation elongation factor 1 delta, transcript variant X13
17. MT-ND3 MT-ND3 928.90 7476.55
18. ACTG1_1 ENSGALG00000001381 696.68 5607.45 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
19. ENSGALG00000028649 ENSGALG00000028649 696.68 5607.45
20. HMGB2 ENSGALG00000010745 696.68 5607.45 high mobility group box 2 [Source:NCBI gene;Acc:396482]
21. LDHB ENSGALG00000035836 696.68 5607.45 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
22. LSM5 ENSGALG00000041625 696.68 5607.45 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
23. MAD2L1 ENSGALG00000011967 696.68 5607.45 mitotic arrest deficient 2 like 1 [Source:NCBI gene;Acc:422675]
24. PNRC1 ENSGALG00000015780 696.68 5607.45 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
25. RPL13 ENSGALG00000006179 696.68 5607.45 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
26. RPL15 ENSGALG00000011290 696.68 5607.45 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL26 RPL26 696.68 5607.45
28. RPL8 ENSGALG00000016232 696.68 5607.45 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
29. ANP32B ENSGALG00000037483 464.45 3738.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
30. ATP6V0C ENSGALG00000009229 464.45 3738.27 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
31. BRF1 ENSGALG00000011705 464.45 3738.27 BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
32. CALM CALM 464.45 3738.27
33. CCT5 ENSGALG00000013041 464.45 3738.27 chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
34. CLTA ENSGALG00000015326 464.45 3738.27 clathrin light chain A [Source:NCBI gene;Acc:427284]
35. COX6A1 ENSGALG00000007205 464.45 3738.27 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
36. CRABP-I ENSGALG00000003193 464.45 3738.27 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
37. CRHOB CRHOB 464.45 3738.27
38. DDX3X ENSGALG00000016231 464.45 3738.27 DEAD-box helicase 3 X-linked [Source:NCBI gene;Acc:418567]
39. DENR ENSGALG00000003795 464.45 3738.27 density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
40. EIF4G2 ENSGALG00000005587 464.45 3738.27 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
41. ENSGALG00000018386 ENSGALG00000018386 464.45 3738.27
42. ENSGALG00000021694 ENSGALG00000021694 464.45 3738.27
43. H3-IX H3-IX 464.45 3738.27
44. HNRNPDL ENSGALG00000023199 464.45 3738.27 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
45. LZIC ENSGALG00000002616 464.45 3738.27 leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
46. MED8 ENSGALG00000009993 464.45 3738.27 mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
47. MT-ND2 MT-ND2 464.45 3738.27
48. MTX2 ENSGALG00000009264 464.45 3738.27 metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
49. NDUFS4 ENSGALG00000028026 464.45 3738.27 NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
50. NEK6 ENSGALG00000001118 464.45 3738.27 NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
51. NR2F1 ENSGALG00000027907 464.45 3738.27 nuclear receptor subfamily 2 group F member 1 [Source:HGNC Symbol;Acc:HGNC:7975]
52. PSMD3 ENSGALG00000033162 464.45 3738.27 proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
53. PSME3 ENSGALG00000002937 464.45 3738.27 proteasome activator subunit 3 [Source:NCBI gene;Acc:420017]
54. RBBP4 ENSGALG00000003522 464.45 3738.27 RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
55. RPL18A 464.45 3738.27 ribosomal protein L18a
56. RPL3 ENSGALG00000012172 464.45 3738.27 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
57. RPL35A ENSGALG00000007611, ENSGALG00000041230 464.45 3738.27 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
58. RPS2 ENSGALG00000005490 464.45 3738.27 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
59. RPS20 ENSGALG00000014432 464.45 3738.27 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. RPS23 ENSGALG00000015617 464.45 3738.27 ribosomal protein S23
61. RPS27A ENSGALG00000036790 464.45 3738.27 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
62. RPS4 RPS4 464.45 3738.27
63. RPS6 ENSGALG00000015082 464.45 3738.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
64. SMARCB1 ENSGALG00000005983 464.45 3738.27 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:NCBI gene;Acc:769489]
65. SYNCRIP ENSGALG00000015830 464.45 3738.27 synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
66. TCEB3 ENSGALG00000034625 464.45 3738.27 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. UBE2D3 ENSGALG00000012311 464.45 3738.27 ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]
68. YWHAZ ENSGALG00000031387 464.45 3738.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
69. ZRANB2 ENSGALG00000011340 464.45 3738.27 zinc finger RANBP2-type containing 2 [Source:NCBI gene;Acc:424717]
70. ACAT2 ENSGALG00000011659 232.23 1869.18 acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
71. AKAP1 ENSGALG00000005575 232.23 1869.18 A-kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:367]
72. ALDH1A2 ENSGALG00000004270 232.23 1869.18 aldehyde dehydrogenase 1 family member A2 [Source:NCBI gene;Acc:395844]
73. ANKRD9 ENSGALG00000011376 232.23 1869.18 ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
74. APLP2 ENSGALG00000001250 232.23 1869.18 amyloid beta precursor like protein 2 [Source:NCBI gene;Acc:419727]
75. ARGLU1 ENSGALG00000016855 232.23 1869.18 arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
76. ARHGDIB ENSGALG00000011738 232.23 1869.18 Rho GDP dissociation inhibitor beta [Source:NCBI gene;Acc:417941]
77. ASAP2 ENSGALG00000016419 232.23 1869.18 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
78. ATG16L1 ENSGALG00000001619 232.23 1869.18 autophagy related 16 like 1 [Source:HGNC Symbol;Acc:HGNC:21498]
79. ATP5F1 232.23 1869.18 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
80. ATP5MC1 ENSGALG00000001330 232.23 1869.18 ATP synthase membrane subunit c locus 1 [Source:HGNC Symbol;Acc:HGNC:841]
81. ATP6V1G1 ENSGALG00000007190 232.23 1869.18 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
82. BAHD1 ENSGALG00000033675 232.23 1869.18 bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
83. BASP1 ENSGALG00000012952 232.23 1869.18 brain abundant membrane attached signal protein 1 [Source:NCBI gene;Acc:373905]
84. BHMT ENSGALG00000004518 232.23 1869.18 betaine--homocysteine S-methyltransferase
85. BIRC5 ENSGALG00000008713 232.23 1869.18 baculoviral IAP repeat containing 5 [Source:NCBI gene;Acc:374078]
86. BRIX1 ENSGALG00000003373 232.23 1869.18 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
87. C5ORF13 C5ORF13 232.23 1869.18
88. C9orf85 ENSGALG00000026001 232.23 1869.18 chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
89. CBX3 ENSGALG00000011038 232.23 1869.18 chromobox 3 [Source:NCBI gene;Acc:395355]
90. CCDC132 CCDC132 232.23 1869.18
91. CDC42 ENSGALG00000004796 232.23 1869.18 cell division cycle 42 [Source:NCBI gene;Acc:395917]
92. CDCA3 ENSGALG00000014513 232.23 1869.18 cell division cycle associated 3 [Source:NCBI gene;Acc:770517]
93. CDCA4 ENSGALG00000011692 232.23 1869.18 cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
94. CDCA7 ENSGALG00000040833 232.23 1869.18 cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
95. CDH3 232.23 1869.18 cadherin 3
96. CDKN1B ENSGALG00000022980 232.23 1869.18 cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
97. CENPP ENSGALG00000004687 232.23 1869.18 centromere protein P [Source:NCBI gene;Acc:415952]
98. CEP78 ENSGALG00000015179 232.23 1869.18 centrosomal protein 78 [Source:HGNC Symbol;Acc:HGNC:25740]
99. CHCHD2 ENSGALG00000002495 232.23 1869.18 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
100. CHMP5 ENSGALG00000013160 232.23 1869.18 charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA