Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s7.

Sample reads: 133,397. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16398.04 122926.75
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5565.11 41718.45 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. actb2 ENSDARG00000037870 1169.14 8764.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
4. si:dkey-151g10.6 si:dkey-151g10.6 1152.44 8639.19
5. tmsb4x ENSDARG00000077777 1142.42 8564.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. mt-co2 ENSDARG00000063908 1135.74 8513.99 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. ppiaa ENSDARG00000009212 941.99 7061.56 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. eef1a1l1 ENSDARG00000020850 931.97 6986.45 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. mt-co3 ENSDARG00000063912 805.04 6034.93 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. efemp2a ENSDARG00000094324 771.63 5784.47 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
11. zgc:112425 zgc:112425 764.95 5734.39
12. mt-nd2 ENSDARG00000063899 724.87 5433.94 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 701.48 5258.60 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. eef2b ENSDARG00000100371, ENSDARG00000109247 671.42 5033.25 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
15. mt-nd4 ENSDARG00000063917 651.38 4883.02 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. actb1 ENSDARG00000037746, ENSDARG00000113649 641.36 4807.91 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
17. id1 ENSDARG00000040764 611.29 4582.49 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
18. mt-atp6 ENSDARG00000063911 587.91 4407.23 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. rpl26 ENSDARG00000102317 564.53 4231.96 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
20. btf3 ENSDARG00000035400, ENSDARG00000116462 557.85 4181.88 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
21. hspa8 ENSDARG00000068992, ENSDARG00000114726 551.17 4131.81 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
22. rpl23 ENSDARG00000053457 547.83 4106.77 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. rpl8 ENSDARG00000014867 544.49 4081.73 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. hmga1a ENSDARG00000028335 541.15 4056.69 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
25. rpl21 ENSDARG00000010516, ENSDARG00000110263 487.70 3656.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
26. rps23 ENSDARG00000021838 430.91 3230.29 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
27. rpl9 ENSDARG00000037350, ENSDARG00000112384 427.57 3205.25 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
28. acta1a ENSDARG00000036371 424.23 3180.21 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
29. rpl18a ENSDARG00000025073 424.23 3180.21 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. ptmab ENSDARG00000101766 394.17 2954.87 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
31. rpl19 ENSDARG00000013307 390.83 2929.83 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
32. rps26l ENSDARG00000030408 377.47 2829.68 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
33. zgc:66286 zgc:66286 377.47 2829.68
34. rps14 ENSDARG00000036629 374.13 2804.64 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. si:ch1073-429i10.3 374.13 2804.64 si:ch1073-429i10.3, transcript variant X2
36. rplp1 ENSDARG00000021864 367.44 2754.49 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
37. rpl27 ENSDARG00000015128 350.74 2629.30 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
38. hsp90ab1 ENSDARG00000029150 347.40 2604.26 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
39. myl10 ENSDARG00000062592 344.06 2579.22 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
40. rps19 ENSDARG00000030602 344.06 2579.22 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
41. mt-nd1 ENSDARG00000063895 337.38 2529.15 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
42. eif5a ENSDARG00000017235 334.04 2504.11 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
43. rpl11 ENSDARG00000043509 334.04 2504.11 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
44. pabpc1a ENSDARG00000017219 330.70 2479.07 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
45. rpl15 ENSDARG00000009285 330.70 2479.07 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
46. rps15a ENSDARG00000010160 327.36 2454.03 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
47. rps15 ENSDARG00000070849, ENSDARG00000110979 320.68 2403.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 320.68 2403.95 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. rps3 ENSDARG00000103007 314.00 2353.88 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
50. cfl1l ENSDARG00000012972 307.32 2303.80 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
51. rps12 ENSDARG00000036875, ENSDARG00000115157 307.32 2303.80 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
52. rps27.1 ENSDARG00000023298 307.32 2303.80 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
53. rplp0 ENSDARG00000051783 303.98 2278.76 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
54. rpl36a ENSDARG00000058105, ENSDARG00000112656 300.64 2253.73 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
55. rps29 ENSDARG00000041232 300.64 2253.73 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
56. rpl36 ENSDARG00000100588 293.96 2203.65 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
57. hbbe3 ENSDARG00000038147, ENSDARG00000109344 290.62 2178.61 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
58. rps2 ENSDARG00000077291 287.27 2153.50 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
59. rps20 ENSDARG00000036044 287.27 2153.50 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
60. rps9 ENSDARG00000011405, ENSDARG00000113248 287.27 2153.50 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
61. rpl18 ENSDARG00000029533 283.93 2128.46 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
62. faua ENSDARG00000099022 270.57 2028.31 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
63. mt-cyb ENSDARG00000063924 270.57 2028.31 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
64. rps10 ENSDARG00000034897 270.57 2028.31 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
65. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 263.89 1978.23 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
66. rpl5b ENSDARG00000015862, ENSDARG00000109661 263.89 1978.23 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
67. rpl39 ENSDARG00000036316, ENSDARG00000117167 260.55 1953.19 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
68. rpl6 ENSDARG00000058451 260.55 1953.19 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
69. capns1b ENSDARG00000013804 257.21 1928.16 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
70. rpl7 ENSDARG00000007320 257.21 1928.16 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
71. rps24 ENSDARG00000039347 257.21 1928.16 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
72. rpsa ENSDARG00000019181 240.51 1802.97 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
73. si:dkeyp-86f7.3 si:dkeyp-86f7.3 240.51 1802.97
74. pcna ENSDARG00000054155 237.17 1777.93 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
75. RPL29 ENSDARG00000077717 233.83 1752.89 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
76. rps6 ENSDARG00000019778 233.83 1752.89 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
77. rps4x ENSDARG00000014690 230.49 1727.85 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
78. col1a1a ENSDARG00000012405, ENSDARG00000116113 223.81 1677.78 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
79. cirbp cirbp 220.47 1652.74
80. AL954137.2 ENSDARG00000114408 217.13 1627.70
81. krt8 ENSDARG00000058358, ENSDARG00000109279 217.13 1627.70 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
82. cd81 cd81 213.79 1602.66
83. hnrnpab hnrnpab 213.79 1602.66
84. rps5 ENSDARG00000043453 213.79 1602.66 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
85. rpl28 ENSDARG00000005791 210.45 1577.62 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
86. apoeb ENSDARG00000040295 207.11 1552.59 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
87. hmgn2 ENSDARG00000099572 203.76 1527.47 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
88. rps13 ENSDARG00000036298, ENSDARG00000112818 203.76 1527.47 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
89. apoc1l apoc1l 193.74 1452.36
90. bcam ENSDARG00000090190 193.74 1452.36 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
91. rpl14 ENSDARG00000103433 190.40 1427.32 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
92. rpl17 ENSDARG00000057556 190.40 1427.32 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
93. rpl24 ENSDARG00000099104 190.40 1427.32 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
94. h3f3a 187.06 1402.28 H3 histone, family 3A, transcript variant X1
95. ran ENSDARG00000057026 187.06 1402.28 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
96. rpl38 ENSDARG00000006413 183.72 1377.24 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
97. zgc:92533 zgc:92533 183.72 1377.24
98. fabp3 ENSDARG00000023290 180.38 1352.21 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
99. rps27.2 ENSDARG00000055475 180.38 1352.21 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
100. pfn1 ENSDARG00000088091 177.04 1327.17 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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