Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s60.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19029.88 142646.11
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4061.64 30445.65 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1980.65 14846.76 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoc1l apoc1l 1846.88 13844.03
5. mt-atp6 ENSDARG00000063911 1174.27 8802.21 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
6. mt-co2 ENSDARG00000063908 1170.55 8774.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd2 ENSDARG00000063899 1125.96 8440.09 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. si:dkey-151g10.6 si:dkey-151g10.6 962.46 7214.51
9. zgc:112425 zgc:112425 955.02 7158.74
10. ppiaa ENSDARG00000009212 914.15 6852.38 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. mt-nd4 ENSDARG00000063917 884.42 6629.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. hmga1a ENSDARG00000028335 832.39 6239.51 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
13. actb2 ENSDARG00000037870 761.79 5710.30 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. mt-co3 ENSDARG00000063912 754.36 5654.61 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. eef1a1l1 ENSDARG00000020850 732.06 5487.45 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. efemp2a ENSDARG00000094324 713.48 5348.18 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
17. actb1 ENSDARG00000037746, ENSDARG00000113649 676.32 5069.63 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. rpl23 ENSDARG00000053457 646.59 4846.78 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 579.70 4345.37 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. ptmab ENSDARG00000101766 553.69 4150.41 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
21. rpl18a ENSDARG00000025073 523.96 3927.55 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
22. rpl21 ENSDARG00000010516, ENSDARG00000110263 516.53 3871.86 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
23. pcna ENSDARG00000054155 494.23 3704.70 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
24. id1 ENSDARG00000040764 453.36 3398.34 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
25. rpl26 ENSDARG00000102317 445.93 3342.65 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
26. rpl8 ENSDARG00000014867 442.21 3314.76 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
27. rps23 ENSDARG00000021838 434.78 3259.07 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
28. rpl36a ENSDARG00000058105, ENSDARG00000112656 427.35 3203.37 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
29. rps14 ENSDARG00000036629 423.63 3175.49 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
30. hspa8 ENSDARG00000068992, ENSDARG00000114726 412.48 3091.91 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
31. btf3 ENSDARG00000035400, ENSDARG00000116462 405.05 3036.22 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
32. col1a1a ENSDARG00000012405, ENSDARG00000116113 386.47 2896.94 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
33. eef2b ENSDARG00000100371, ENSDARG00000109247 386.47 2896.94 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
34. rpl9 ENSDARG00000037350, ENSDARG00000112384 386.47 2896.94 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
35. rpl36 ENSDARG00000100588 379.04 2841.25 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
36. mt-nd1 ENSDARG00000063895 375.32 2813.36 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. rps26l ENSDARG00000030408 375.32 2813.36 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
38. rps6 ENSDARG00000019778 375.32 2813.36 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
39. hsp90ab1 ENSDARG00000029150 367.89 2757.67 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
40. si:dkeyp-86f7.3 si:dkeyp-86f7.3 360.46 2701.97
41. rpl19 ENSDARG00000013307 356.74 2674.09 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
42. mt-cyb ENSDARG00000063924 349.31 2618.39 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
43. rps27a ENSDARG00000032725, ENSDARG00000114059 338.16 2534.81 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
44. rps2 ENSDARG00000077291 334.44 2506.93 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
45. zgc:92533 zgc:92533 334.44 2506.93
46. krt8 ENSDARG00000058358, ENSDARG00000109279 327.01 2451.23 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
47. cyt1l ENSDARG00000036832 323.30 2423.43 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
48. cfl1l ENSDARG00000012972 315.86 2367.66 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
49. rpl11 ENSDARG00000043509 312.15 2339.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
50. rps4x ENSDARG00000014690 308.43 2311.96 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
51. rpl18 ENSDARG00000029533 304.72 2284.15 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
52. apoeb ENSDARG00000040295 297.28 2228.38 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
53. rps9 ENSDARG00000011405, ENSDARG00000113248 297.28 2228.38 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
54. rpl15 ENSDARG00000009285 282.42 2116.99 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
55. rpl7 ENSDARG00000007320 282.42 2116.99 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
56. AL954137.2 ENSDARG00000114408 274.99 2061.30
57. rps15 ENSDARG00000070849, ENSDARG00000110979 274.99 2061.30 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
58. rpl24 ENSDARG00000099104 271.27 2033.41 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
59. rpl27 ENSDARG00000015128 267.56 2005.60 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
60. RPL29 ENSDARG00000077717 263.84 1977.72 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
61. bcam ENSDARG00000090190 263.84 1977.72 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
62. rplp1 ENSDARG00000021864 263.84 1977.72 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
63. mt-co1 ENSDARG00000063905 256.41 1922.02 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
64. rps19 ENSDARG00000030602 256.41 1922.02 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
65. rps5 ENSDARG00000043453 256.41 1922.02 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
66. rpl39 ENSDARG00000036316, ENSDARG00000117167 252.69 1894.14 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
67. rps15a ENSDARG00000010160 252.69 1894.14 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
68. rpl35 ENSDARG00000018334 241.54 1810.56 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
69. rpl14 ENSDARG00000103433 237.83 1782.75 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
70. rps20 ENSDARG00000036044 234.11 1754.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
71. fkbp1aa ENSDARG00000022684 230.39 1726.98 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
72. rpl5b ENSDARG00000015862, ENSDARG00000109661 230.39 1726.98 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
73. rpl6 ENSDARG00000058451 230.39 1726.98 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
74. zgc:123194 zgc:123194 230.39 1726.98
75. khdrbs1a ENSDARG00000052856 226.68 1699.17 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
76. si:ch1073-429i10.3 226.68 1699.17 si:ch1073-429i10.3, transcript variant X2
77. rps24 ENSDARG00000039347 222.96 1671.29 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
78. rps27.1 ENSDARG00000023298 222.96 1671.29 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
79. eif5a ENSDARG00000017235 219.25 1643.48 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
80. faua ENSDARG00000099022 219.25 1643.48 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
81. rps3 ENSDARG00000103007 219.25 1643.48 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
82. rps12 ENSDARG00000036875, ENSDARG00000115157 211.81 1587.71 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
83. rpsa ENSDARG00000019181 211.81 1587.71 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. acta1a ENSDARG00000036371 204.38 1532.01 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
85. ppiab ENSDARG00000103994 204.38 1532.01 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
86. cirbp cirbp 200.67 1504.20
87. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 200.67 1504.20 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
88. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 193.23 1448.43 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
89. cfl1 ENSDARG00000021124 189.52 1420.62 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
90. COX5B_1 ENSDARG00000015978 185.80 1392.74 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
91. rpl31 ENSDARG00000053365 185.80 1392.74 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
92. rplp2l ENSDARG00000011201 182.09 1364.93 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
93. rps10 ENSDARG00000034897 182.09 1364.93 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
94. hmgn2 ENSDARG00000099572 178.37 1337.04 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
95. gnb2l1 174.65 1309.16 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
96. ssr2 ENSDARG00000005230 174.65 1309.16 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
97. h3f3a 170.94 1281.35 H3 histone, family 3A, transcript variant X1
98. pabpc1a ENSDARG00000017219 170.94 1281.35 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
99. RPL37A RPL37A 167.22 1253.46
100. rplp0 ENSDARG00000051783 167.22 1253.46 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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