Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s14.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2691.38 27962.38 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2653.50 27568.83 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2193.33 22787.84 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2011.71 20900.88 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1881.91 19552.31 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1811.71 18822.96 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1280.79 13306.91 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 880.23 9145.24 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Eef1a1 ENSMUSG00000037742 625.07 6494.23 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. mt-Co3 ENSMUSG00000064358 619.50 6436.36 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Actb ENSMUSG00000029580 603.35 6268.57 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Nd3 ENSMUSG00000064360 600.56 6239.58 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Hbb-y ENSMUSG00000052187 458.50 4763.64 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. mt-Nd2 ENSMUSG00000064345 402.23 4179.01 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Gm13340 ENSMUSG00000083563 350.98 3646.54 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Tubb5 ENSMUSG00000001525 314.21 3264.52 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
17. Rpsa ENSMUSG00000032518 309.75 3218.18 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Mdk ENSMUSG00000027239 302.51 3142.96 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Tuba1b ENSMUSG00000023004 296.38 3079.27 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Npm1 ENSMUSG00000057113 293.60 3050.39 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Cfl1 ENSMUSG00000056201 270.75 2812.99 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Ubb ENSMUSG00000019505 244.57 2540.99 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Tpt1 ENSMUSG00000060126 237.88 2471.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Nedd4 ENSMUSG00000032216 236.21 2454.13 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tuba1a ENSMUSG00000072235 236.21 2454.13 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
26. Ybx1 ENSMUSG00000028639 236.21 2454.13 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
27. Tmsb4x ENSMUSG00000049775 220.61 2292.05 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
28. mt-Nd5 ENSMUSG00000064367 218.94 2274.70 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
29. Hba-a1 ENSMUSG00000069919 218.39 2268.99 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
30. Tubb2b ENSMUSG00000045136 214.49 2228.47 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
31. Pkm ENSMUSG00000032294 210.59 2187.95 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Hsp90aa1 ENSMUSG00000021270 202.23 2101.09 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
33. Hsp90ab1 ENSMUSG00000023944 192.20 1996.88 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Rpl4 ENSMUSG00000032399 189.42 1968.00 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Set ENSMUSG00000054766 187.19 1944.83 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Eif5a ENSMUSG00000078812 183.29 1904.31 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
37. Eif4g2 ENSMUSG00000005610 182.73 1898.49 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Atp5g3 ENSMUSG00000018770 172.15 1788.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Hnrnpc ENSMUSG00000060373 172.15 1788.57 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Ran ENSMUSG00000029430 171.59 1782.75 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
41. Fkbp1a ENSMUSG00000032966 170.47 1771.12 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
42. Map1b ENSMUSG00000052727 166.58 1730.70 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
43. Hba-x ENSMUSG00000055609 163.79 1701.71 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
44. Rrm2 ENSMUSG00000020649 160.45 1667.01 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
45. Eef1b2 ENSMUSG00000025967 155.99 1620.67 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Rps26 ENSMUSG00000025362 150.42 1562.80 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Rps20 ENSMUSG00000028234 148.75 1545.45 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
48. Chchd2 ENSMUSG00000070493 145.96 1516.47 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
49. Pcbp1 ENSMUSG00000051695 144.85 1504.93 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
50. H19 ENSMUSG00000000031 144.29 1499.12 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
51. Hmga2 ENSMUSG00000056758 139.28 1447.06 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
52. Rps4x ENSMUSG00000031320 128.13 1331.22 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
53. Hbb-bh1 ENSMUSG00000052217 127.58 1325.51 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
54. Paics ENSMUSG00000029247 127.58 1325.51 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
55. Grb10 ENSMUSG00000020176 127.02 1319.69 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
56. Pabpc1 ENSMUSG00000022283 125.35 1302.34 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
57. Marcks ENSMUSG00000069662 123.68 1284.99 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
58. Rpl23 ENSMUSG00000071415 123.12 1279.17 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
59. Basp1 ENSMUSG00000045763 122.56 1273.35 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
60. Rplp1 ENSMUSG00000007892 122.56 1273.35 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Vim ENSMUSG00000026728 121.45 1261.82 vimentin [Source:MGI Symbol;Acc:MGI:98932]
62. Gm14303 ENSMUSG00000081344 119.78 1244.47 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
63. Igf2 ENSMUSG00000048583 116.99 1215.48 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
64. Banf1 ENSMUSG00000024844 116.44 1209.77 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
65. Ywhab ENSMUSG00000018326 116.44 1209.77 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
66. Hnrnpa0 ENSMUSG00000007836 115.32 1198.13 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
67. Ywhae ENSMUSG00000020849 114.76 1192.31 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
68. Fscn1 ENSMUSG00000029581 114.21 1186.60 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
69. Hmgn1 ENSMUSG00000040681 112.54 1169.25 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 112.54 1169.25 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
71. Rps5 ENSMUSG00000012848 106.41 1105.56 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Cdkn1c ENSMUSG00000037664 105.29 1093.92 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
73. Anp32b ENSMUSG00000028333 104.18 1082.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
74. Stmn1 ENSMUSG00000028832 103.62 1076.57 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
75. Rpl32 ENSMUSG00000057841 102.51 1065.04 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Rpl18a ENSMUSG00000045128 101.95 1059.22 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
77. Tmpo ENSMUSG00000019961 100.28 1041.87 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
78. Srsf3 ENSMUSG00000071172 96.94 1007.17 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
79. Gm15459 ENSMUSG00000100801 95.82 995.53 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
80. H3f3b ENSMUSG00000016559 95.82 995.53 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
81. Slc25a5 ENSMUSG00000016319 95.82 995.53 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
82. Trp53i11 ENSMUSG00000068735 95.82 995.53 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
83. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 95.27 989.82 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
84. Serbp1 ENSMUSG00000036371 94.71 984.00 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
85. Trim28 ENSMUSG00000005566 94.15 978.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Hnrnpa2b1 ENSMUSG00000004980 93.59 972.36 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
87. Rpl37 ENSMUSG00000041841 93.59 972.36 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
88. Hba-a2 ENSMUSG00000069917 91.37 949.30 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
89. Rps3a1 ENSMUSG00000028081 91.37 949.30 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
90. Sfpq ENSMUSG00000028820 91.37 949.30 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
91. Gm5805 ENSMUSG00000061848 90.25 937.66 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
92. Marcksl1 ENSMUSG00000047945 90.25 937.66 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Ddx5 ENSMUSG00000020719 89.69 931.84 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Rpl41 ENSMUSG00000093674 89.69 931.84 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
95. U2af2 ENSMUSG00000030435 89.69 931.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
96. Sub1 ENSMUSG00000022205 89.14 926.13 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
97. Crabp1 ENSMUSG00000032291 87.47 908.78 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
98. Scd2 ENSMUSG00000025203 87.47 908.78 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
99. Top2a ENSMUSG00000020914 86.91 902.96 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
100. Hnrnpk ENSMUSG00000021546 85.79 891.32 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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