Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E10_5_slice_2, section s7.

Sample reads: 96,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3109.96 32316.50 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2694.48 27999.12 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2431.20 25263.30 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2326.98 24180.32 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1859.39 19321.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1609.83 16728.21 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Rnr2 ENSMUSG00000064339 1367.12 14206.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1024.31 10643.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 869.36 9033.77 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd2 ENSMUSG00000064345 836.45 8691.79 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Eef1a1 ENSMUSG00000037742 597.86 6212.54 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd3 ENSMUSG00000064360 595.12 6184.06 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 592.37 6155.49 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Rpsa ENSMUSG00000032518 507.36 5272.13 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Pkm ENSMUSG00000032294 500.50 5200.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
16. Gm13340 ENSMUSG00000083563 386.69 4018.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Npm1 ENSMUSG00000057113 386.69 4018.21 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
18. mt-Co3 ENSMUSG00000064358 359.26 3733.17 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
19. Tuba1b ENSMUSG00000023004 345.55 3590.71 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Cfl1 ENSMUSG00000056201 334.58 3476.72 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. mt-Nd5 ENSMUSG00000064367 318.13 3305.78 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Gm10800 ENSMUSG00000075014 298.93 3106.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Mdk ENSMUSG00000027239 285.22 2963.80 midkine [Source:MGI Symbol;Acc:MGI:96949]
24. Rps26 ENSMUSG00000025362 278.36 2892.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
25. Hnrnpc ENSMUSG00000060373 274.25 2849.81 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
26. Hbb-bh1 ENSMUSG00000052217 272.88 2835.58 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
27. Set ENSMUSG00000054766 255.05 2650.30 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Rpl4 ENSMUSG00000032399 239.97 2493.60 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. mt-Rnr1 ENSMUSG00000064337 235.85 2450.79 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Tpt1 ENSMUSG00000060126 227.62 2365.27 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
31. Hba-a1 ENSMUSG00000069919 213.91 2222.80 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Hmga2 ENSMUSG00000056758 213.91 2222.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
33. H19 ENSMUSG00000000031 209.80 2180.09 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
34. Rpl18a ENSMUSG00000045128 209.80 2180.09 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
35. Rplp1 ENSMUSG00000007892 208.43 2165.86 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
36. Eif5a ENSMUSG00000078812 205.69 2137.38 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
37. Tmsb4x ENSMUSG00000049775 205.69 2137.38 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
38. Nedd4 ENSMUSG00000032216 201.57 2094.57 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
39. Tubb5 ENSMUSG00000001525 201.57 2094.57 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
40. Ubb ENSMUSG00000019505 198.83 2066.10 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Hsp90aa1 ENSMUSG00000021270 196.09 2037.63 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
42. Rpl32 ENSMUSG00000057841 194.72 2023.39 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
43. Rps5 ENSMUSG00000012848 193.34 2009.05 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
44. Eif4g2 ENSMUSG00000005610 191.97 1994.82 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Ybx1 ENSMUSG00000028639 187.86 1952.11 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Banf1 ENSMUSG00000024844 186.49 1937.87 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Rps20 ENSMUSG00000028234 185.12 1923.64 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
48. Rpl23 ENSMUSG00000071415 181.00 1880.82 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Chchd2 ENSMUSG00000070493 178.26 1852.35 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Hba-x ENSMUSG00000055609 174.15 1809.64 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
51. Hsp90ab1 ENSMUSG00000023944 174.15 1809.64 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
52. Rpl37 ENSMUSG00000041841 174.15 1809.64 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
53. Rrm2 ENSMUSG00000020649 174.15 1809.64 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
54. Rps4x ENSMUSG00000031320 168.66 1752.60 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. 2810417H13Rik 160.43 1667.07 RIKEN cDNA 2810417H13 gene
56. Tubb2b ENSMUSG00000045136 160.43 1667.07 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
57. Hba-a2 ENSMUSG00000069917 157.69 1638.60 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
58. Crabp1 ENSMUSG00000032291 154.95 1610.13 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
59. Gm5805 ENSMUSG00000061848 153.58 1595.89 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Ran ENSMUSG00000029430 153.58 1595.89 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Atp5g3 ENSMUSG00000018770 152.21 1581.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Gm14303 ENSMUSG00000081344 152.21 1581.66 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
63. U2af2 ENSMUSG00000030435 150.84 1567.42 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Rpl39-ps ENSMUSG00000036305 148.09 1538.85 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
65. Ndufa12 ENSMUSG00000020022 146.72 1524.61 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
66. Ldha ENSMUSG00000063229 139.87 1453.43 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
67. Paics ENSMUSG00000029247 139.87 1453.43 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Pabpc1 ENSMUSG00000022283 135.75 1410.62 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Eef1b2 ENSMUSG00000025967 131.64 1367.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
70. Gm5963 ENSMUSG00000052192 128.90 1339.44 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
71. Gm14586 ENSMUSG00000083621 127.52 1325.10 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
72. Ywhab ENSMUSG00000018326 126.15 1310.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
73. Rps3a1 ENSMUSG00000028081 123.41 1282.39 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
74. Cox8a ENSMUSG00000035885 122.04 1268.15 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Ndufc2 ENSMUSG00000030647 122.04 1268.15 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
76. Grb10 ENSMUSG00000020176 116.55 1211.10 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
77. Rpl26 ENSMUSG00000060938 115.18 1196.87 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
78. Calm1 ENSMUSG00000001175 113.81 1182.63 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
79. Son ENSMUSG00000022961 113.81 1182.63 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
80. Sub1 ENSMUSG00000022205 113.81 1182.63 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
81. Malat1 ENSMUSG00000092341 112.44 1168.40 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
82. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 111.07 1154.16 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
83. Fkbp1a ENSMUSG00000032966 109.70 1139.92 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
84. Myl6 ENSMUSG00000090841 105.59 1097.22 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
85. Top2a ENSMUSG00000020914 104.21 1082.88 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
86. Slc25a5 ENSMUSG00000016319 101.47 1054.40 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
87. Tecr ENSMUSG00000031708 101.47 1054.40 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
88. Ccnd2 ENSMUSG00000000184 100.10 1040.17 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
89. Rpl41 ENSMUSG00000093674 100.10 1040.17 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
90. Rpl8 ENSMUSG00000003970 98.73 1025.93 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. Igf2 ENSMUSG00000048583 97.36 1011.70 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
92. Pcbp1 ENSMUSG00000051695 97.36 1011.70 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. Srsf3 ENSMUSG00000071172 97.36 1011.70 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
94. Trim28 ENSMUSG00000005566 97.36 1011.70 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
95. Anp32b ENSMUSG00000028333 95.99 997.46 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Rps8 ENSMUSG00000047675 95.99 997.46 ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166]
97. Lamp1 ENSMUSG00000031447 90.50 940.41 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
98. Vim ENSMUSG00000026728 90.50 940.41 vimentin [Source:MGI Symbol;Acc:MGI:98932]
99. Fkbp4 ENSMUSG00000030357 89.13 926.18 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
100. Gm8292 ENSMUSG00000100215 89.13 926.18 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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