Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice2, section s50.

Sample reads: 391,638. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. RPL41 ENSG00000229117 11910.66 30412.46 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
2. EEF1A1 ENSG00000156508 6009.19 15343.75 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPS27 ENSG00000177954 4328.48 11052.26 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
4. ACTB ENSG00000075624 3949.33 10084.15 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
5. TUBA1B ENSG00000123416 3699.53 9446.31 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
6. SFRP1 ENSG00000104332 3660.73 9347.24 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
7. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 3409.31 8705.27 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
8. PTMA ENSG00000187514 2584.11 6598.22 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
9. ACTG1 ENSG00000184009 2400.81 6130.18 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
10. PPIA ENSG00000196262 2170.20 5541.35 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
11. RPL10A ENSG00000198755 2054.80 5246.69 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
12. HNRNPC ENSG00000092199 1988.92 5078.47 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
13. MDK ENSG00000110492 1966.28 5020.66 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
14. RPL5 ENSG00000122406 1897.97 4846.24 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
15. RPS12 ENSG00000112306 1882.00 4805.46 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
16. GNAS ENSG00000087460 1867.25 4767.80 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
17. RPS20 ENSG00000008988 1866.64 4766.24 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
18. HSP90AB1 ENSG00000096384 1828.85 4669.75 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
19. RPS6 ENSG00000137154 1809.45 4620.22 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
20. RPL34 ENSG00000109475 1595.01 4072.67 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
21. RPL18A ENSG00000105640 1585.72 4048.95 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
22. RPL31 ENSG00000071082 1485.27 3792.46 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
23. RPL15 ENSG00000174748 1433.33 3659.84 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
24. MTRNR2L1 ENSG00000256618 1412.11 3605.66 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
25. RPS2 ENSG00000140988 1400.39 3575.73 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
26. RPL37 ENSG00000145592 1340.16 3421.94 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
27. UBB ENSG00000170315 1291.25 3297.05 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
28. RPS23 ENSG00000186468 1278.92 3265.57 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
29. PFN1 ENSG00000108518 1262.55 3223.77 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
30. RPL11 ENSG00000142676 1241.13 3169.08 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
31. RPS5 ENSG00000083845 1231.83 3145.33 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
32. TPT1 ENSG00000133112 1193.63 3047.79 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
33. RPL13AP20 ENSG00000234498 1185.95 3028.18 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
34. RPL10 ENSG00000147403 1183.73 3022.51 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
35. IFITM2 ENSG00000185201 1173.62 2996.70 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
36. RPL35 ENSG00000136942 1114.81 2846.53 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
37. CFL1 ENSG00000172757 1101.67 2812.98 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
38. RPS11 ENSG00000142534 1073.99 2742.31 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
39. RPL23 ENSG00000125691 996.38 2544.14 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
40. NGFRAP1 NGFRAP1 985.06 2515.23
41. RPL7A ENSG00000148303, ENSG00000280858 980.41 2503.36 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
42. VIM ENSG00000026025 968.08 2471.88 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
43. RPS15A ENSG00000134419 946.86 2417.69 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
44. RPL13 ENSG00000167526 942.21 2405.82 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
45. RPS13 ENSG00000110700 915.74 2338.23 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
46. HNRNPD ENSG00000138668 911.90 2328.43 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
47. RPS16 ENSG00000105193 895.93 2287.65 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. COL3A1 ENSG00000168542 887.04 2264.95 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
49. MTRNR2L8 ENSG00000255823 876.93 2239.14 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
50. RPS3A ENSG00000145425 860.77 2197.87 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
51. RPS8 ENSG00000142937 842.17 2150.38 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
52. COL1A1 ENSG00000108821 829.24 2117.37 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
53. NPM1 ENSG00000181163 824.59 2105.49 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
54. RPS28 ENSG00000233927 811.65 2072.45 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
55. HMGN1 ENSG00000205581 805.39 2056.47 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
56. RPL3 ENSG00000100316 796.70 2034.28 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
57. SERF2 ENSG00000140264 783.97 2001.77 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
58. UBA52 ENSG00000221983 777.50 1985.25 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:HGNC:12458]
59. PEG10 ENSG00000242265 771.23 1969.24 paternally expressed 10 [Source:HGNC Symbol;Acc:HGNC:14005]
60. RPS29 ENSG00000213741 766.79 1957.91 ribosomal protein S29 [Source:HGNC Symbol;Acc:HGNC:10419]
61. EIF4G2 ENSG00000110321 758.30 1936.23 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
62. CAPNS1 ENSG00000126247 753.85 1924.87 calpain small subunit 1 [Source:HGNC Symbol;Acc:HGNC:1481]
63. ATP5G2 716.66 1829.91 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
64. TMSB4X ENSG00000205542 714.64 1824.75 thymosin beta 4 X-linked [Source:HGNC Symbol;Acc:HGNC:11881]
65. IFITM3 ENSG00000142089 691.00 1764.39 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
66. SRSF2 ENSG00000161547 682.71 1743.22 serine and arginine rich splicing factor 2 [Source:HGNC Symbol;Acc:HGNC:10783]
67. GAPDH ENSG00000111640 676.45 1727.23 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
68. STMN1 ENSG00000117632 674.63 1722.59 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
69. MYL6 ENSG00000092841 665.94 1700.40 myosin light chain 6 [Source:HGNC Symbol;Acc:HGNC:7587]
70. RPS27A ENSG00000143947 655.83 1674.58 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
71. RPL32 ENSG00000144713 651.18 1662.71 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
72. HMGA2 ENSG00000149948 645.12 1647.24 high mobility group AT-hook 2 [Source:HGNC Symbol;Acc:HGNC:5009]
73. HBE1 ENSG00000213931 624.71 1595.12 hemoglobin subunit epsilon 1 [Source:HGNC Symbol;Acc:HGNC:4830]
74. RPL9 ENSG00000163682 622.69 1589.96 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
75. TOMM6 ENSG00000214736 617.84 1577.58 translocase of outer mitochondrial membrane 6 [Source:HGNC Symbol;Acc:HGNC:34528]
76. ITM2C ENSG00000135916 604.70 1544.03 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
77. H2AFZ ENSG00000164032 604.50 1543.52 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
78. FSCN1 ENSG00000075618 602.88 1539.38 fascin actin-bundling protein 1 [Source:HGNC Symbol;Acc:HGNC:11148]
79. RPL22 ENSG00000116251 582.67 1487.78 ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:10315]
80. HNRNPK ENSG00000165119 577.41 1474.35 heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:HGNC:5044]
81. RPLP0 ENSG00000089157 573.78 1465.08 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
82. RPL30 ENSG00000156482 566.90 1447.51 ribosomal protein L30 [Source:HGNC Symbol;Acc:HGNC:10333]
83. MARCKSL1 ENSG00000175130 563.27 1438.24 MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]
84. COL1A2 ENSG00000164692 562.66 1436.69 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
85. SRP14 ENSG00000140319 556.80 1421.72 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
86. NNAT ENSG00000053438 546.29 1394.89 neuronatin [Source:HGNC Symbol;Acc:HGNC:7860]
87. FAU ENSG00000149806 523.65 1337.08 FAU, ubiquitin like and ribosomal protein S30 fusion [Source:HGNC Symbol;Acc:HGNC:3597]
88. USP22 ENSG00000124422 521.03 1330.39 ubiquitin specific peptidase 22 [Source:HGNC Symbol;Acc:HGNC:12621]
89. RPL6 ENSG00000089009 512.13 1307.66 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
90. RPL4 ENSG00000174444 509.91 1301.99 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
91. PKM ENSG00000067225 508.70 1298.91 pyruvate kinase M1/2 [Source:HGNC Symbol;Acc:HGNC:9021]
92. PGAM1 ENSG00000171314 508.50 1298.39 phosphoglycerate mutase 1 [Source:HGNC Symbol;Acc:HGNC:8888]
93. PFN2 ENSG00000070087 499.40 1275.16 profilin 2 [Source:HGNC Symbol;Acc:HGNC:8882]
94. YWHAZ ENSG00000164924 496.77 1268.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]
95. RPL26 ENSG00000161970 495.16 1264.33 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
96. HNRNPM ENSG00000099783 494.55 1262.77 heterogeneous nuclear ribonucleoprotein M [Source:HGNC Symbol;Acc:HGNC:5046]
97. PBX1 ENSG00000185630 494.15 1261.75 PBX homeobox 1 [Source:HGNC Symbol;Acc:HGNC:8632]
98. ZFP36L1 ENSG00000185650 490.31 1251.95 ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]
99. PCBP1 ENSG00000169564 484.85 1238.01 poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8647]
100. ACTC1 ENSG00000159251 479.19 1223.55 actin, alpha, cardiac muscle 1 [Source:HGNC Symbol;Acc:HGNC:143]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA