Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Human_35d_slice1, section s53.

Sample reads: 391,636. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. PTMA ENSG00000187514 6842.26 17470.95 prothymosin alpha [Source:HGNC Symbol;Acc:HGNC:9623]
2. EEF1A1 ENSG00000156508 3506.80 8954.22 eukaryotic translation elongation factor 1 alpha 1 [Source:HGNC Symbol;Acc:HGNC:3189]
3. RPL41 ENSG00000229117 3429.26 8756.23 ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:10354]
4. RPL5 ENSG00000122406 2181.12 5569.25 ribosomal protein L5 [Source:HGNC Symbol;Acc:HGNC:10360]
5. ACTG1 ENSG00000184009 2112.33 5393.60 actin gamma 1 [Source:HGNC Symbol;Acc:HGNC:144]
6. SFRP1 ENSG00000104332 2002.28 5112.60 secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]
7. ACTB ENSG00000075624 1976.01 5045.52 actin beta [Source:HGNC Symbol;Acc:HGNC:132]
8. RPS20 ENSG00000008988 1902.23 4857.13 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
9. RPL15 ENSG00000174748 1713.38 4374.93 ribosomal protein L15 [Source:HGNC Symbol;Acc:HGNC:10306]
10. PPIA ENSG00000196262 1610.83 4113.08 peptidylprolyl isomerase A [Source:HGNC Symbol;Acc:HGNC:9253]
11. RPS6 ENSG00000137154 1391.96 3554.22 ribosomal protein S6 [Source:HGNC Symbol;Acc:HGNC:10429]
12. MDK ENSG00000110492 1381.96 3528.68 midkine [Source:HGNC Symbol;Acc:HGNC:6972]
13. RPS5 ENSG00000083845 1325.68 3384.98 ribosomal protein S5 [Source:HGNC Symbol;Acc:HGNC:10426]
14. TUBB ENSG00000183311, ENSG00000196230, ENSG00000224156, ENSG00000227739, ENSG00000229684, ENSG00000232421, ENSG00000232575, ENSG00000235067 1301.92 3324.31 tubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]
15. GNAS ENSG00000087460 1289.41 3292.37 GNAS complex locus [Source:HGNC Symbol;Acc:HGNC:4392]
16. NGFRAP1 NGFRAP1 1283.16 3276.41
17. MTRNR2L1 ENSG00000256618 1276.91 3260.45 MT-RNR2 like 1 [Source:HGNC Symbol;Acc:HGNC:37155]
18. TUBA1B ENSG00000123416 1253.14 3199.75 tubulin alpha 1b [Source:HGNC Symbol;Acc:HGNC:18809]
19. RPL18A ENSG00000105640 1241.89 3171.03 ribosomal protein L18a [Source:HGNC Symbol;Acc:HGNC:10311]
20. MTRNR2L8 ENSG00000255823 1238.14 3161.45 MT-RNR2 like 8 [Source:HGNC Symbol;Acc:HGNC:37165]
21. RPL13AP20 ENSG00000234498 1229.38 3139.09 ribosomal protein L13a pseudogene 20 [Source:HGNC Symbol;Acc:HGNC:35709]
22. RPL9 ENSG00000163682 1198.12 3059.27 ribosomal protein L9 [Source:HGNC Symbol;Acc:HGNC:10369]
23. RPS27A ENSG00000143947 1166.85 2979.42 ribosomal protein S27a [Source:HGNC Symbol;Acc:HGNC:10417]
24. RPS23 ENSG00000186468 1139.34 2909.18 ribosomal protein S23 [Source:HGNC Symbol;Acc:HGNC:10410]
25. HSP90AB1 ENSG00000096384 1131.83 2890.00 heat shock protein 90 alpha family class B member 1 [Source:HGNC Symbol;Acc:HGNC:5258]
26. RPL23 ENSG00000125691 1115.57 2848.48 ribosomal protein L23 [Source:HGNC Symbol;Acc:HGNC:10316]
27. RPS12 ENSG00000112306 1106.82 2826.14 ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]
28. RPL10A ENSG00000198755 1086.81 2775.05 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
29. RPL37 ENSG00000145592 1081.81 2762.28 ribosomal protein L37 [Source:HGNC Symbol;Acc:HGNC:10347]
30. COL3A1 ENSG00000168542 1058.04 2701.59 collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201]
31. RPL31 ENSG00000071082 1053.04 2688.82 ribosomal protein L31 [Source:HGNC Symbol;Acc:HGNC:10334]
32. RPL34 ENSG00000109475 1053.04 2688.82 ribosomal protein L34 [Source:HGNC Symbol;Acc:HGNC:10340]
33. COL1A1 ENSG00000108821 1040.53 2656.88 collagen type I alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2197]
34. VIM ENSG00000026025 1020.52 2605.78 vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
35. TPT1 ENSG00000133112 952.99 2433.35 tumor protein, translationally-controlled 1 [Source:HGNC Symbol;Acc:HGNC:12022]
36. RPLP1 ENSG00000137818 936.73 2391.84 ribosomal protein lateral stalk subunit P1 [Source:HGNC Symbol;Acc:HGNC:10372]
37. RPL13 ENSG00000167526 915.47 2337.55 ribosomal protein L13 [Source:HGNC Symbol;Acc:HGNC:10303]
38. RPS8 ENSG00000142937 912.97 2331.17 ribosomal protein S8 [Source:HGNC Symbol;Acc:HGNC:10441]
39. GAPDH ENSG00000111640 905.46 2311.99 glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:HGNC:4141]
40. RPL7A ENSG00000148303, ENSG00000280858 905.46 2311.99 ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
41. RPL14 ENSG00000188846 900.46 2299.22 ribosomal protein L14 [Source:HGNC Symbol;Acc:HGNC:10305]
42. RPS11 ENSG00000142534 889.21 2270.50 ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:10384]
43. STMN1 ENSG00000117632 876.70 2238.56 stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]
44. RPS15A ENSG00000134419 869.20 2219.41 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. IFITM3 ENSG00000142089 834.18 2129.99 interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]
46. DDX17 ENSG00000100201 802.91 2050.14 DEAD-box helicase 17 [Source:HGNC Symbol;Acc:HGNC:2740]
47. HNRNPC ENSG00000092199 755.39 1928.80 heterogeneous nuclear ribonucleoprotein C (C1/C2) [Source:HGNC Symbol;Acc:HGNC:5035]
48. RPL3 ENSG00000100316 747.88 1909.63 ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10332]
49. RPS27 ENSG00000177954 741.63 1893.67 ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:10416]
50. NPM1 ENSG00000181163 735.38 1877.71 nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]
51. RPS3A ENSG00000145425 720.37 1839.38 ribosomal protein S3A [Source:HGNC Symbol;Acc:HGNC:10421]
52. RPL37A ENSG00000197756 679.10 1734.01 ribosomal protein L37a [Source:HGNC Symbol;Acc:HGNC:10348]
53. RPS7 ENSG00000171863 676.60 1727.62 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. DLK1 ENSG00000185559 675.35 1724.43 delta like non-canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2907]
55. RPL6 ENSG00000089009 671.59 1714.83 ribosomal protein L6 [Source:HGNC Symbol;Acc:HGNC:10362]
56. RPS14 ENSG00000164587 671.59 1714.83 ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]
57. RPL10 ENSG00000147403 669.09 1708.45 ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:10298]
58. UBB ENSG00000170315 665.34 1698.87 ubiquitin B [Source:HGNC Symbol;Acc:HGNC:12463]
59. CFL1 ENSG00000172757 659.09 1682.91 cofilin 1 [Source:HGNC Symbol;Acc:HGNC:1874]
60. EIF4G2 ENSG00000110321 655.34 1673.34 eukaryotic translation initiation factor 4 gamma 2 [Source:HGNC Symbol;Acc:HGNC:3297]
61. RPL35 ENSG00000136942 655.34 1673.34 ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
62. RPS16 ENSG00000105193 647.83 1654.16 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
63. SERF2 ENSG00000140264 642.83 1641.40 small EDRK-rich factor 2 [Source:HGNC Symbol;Acc:HGNC:10757]
64. RPS2 ENSG00000140988 629.07 1606.26 ribosomal protein S2 [Source:HGNC Symbol;Acc:HGNC:10404]
65. IFITM2 ENSG00000185201 625.32 1596.69 interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]
66. COL1A2 ENSG00000164692 622.82 1590.30 collagen type I alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2198]
67. RPL11 ENSG00000142676 616.57 1574.34 ribosomal protein L11 [Source:HGNC Symbol;Acc:HGNC:10301]
68. RPS25 ENSG00000118181, ENSG00000280831 616.57 1574.34 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. HNRNPD ENSG00000138668 594.06 1516.87 heterogeneous nuclear ribonucleoprotein D [Source:HGNC Symbol;Acc:HGNC:5036]
70. RBM3 ENSG00000102317 572.79 1462.56 RNA binding motif protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
71. RPL32 ENSG00000144713 571.54 1459.36 ribosomal protein L32 [Source:HGNC Symbol;Acc:HGNC:10336]
72. CD24 ENSG00000272398 570.29 1456.17 CD24 molecule [Source:HGNC Symbol;Acc:HGNC:1645]
73. RPS21 ENSG00000171858 570.29 1456.17 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
74. PFN1 ENSG00000108518 565.29 1443.41 profilin 1 [Source:HGNC Symbol;Acc:HGNC:8881]
75. RPL29 ENSG00000162244 560.29 1430.64 ribosomal protein L29 [Source:HGNC Symbol;Acc:HGNC:10331]
76. ITM2C ENSG00000135916 559.04 1427.45 integral membrane protein 2C [Source:HGNC Symbol;Acc:HGNC:6175]
77. RPS28 ENSG00000233927 554.03 1414.65 ribosomal protein S28 [Source:HGNC Symbol;Acc:HGNC:10418]
78. H3F3B ENSG00000132475 550.28 1405.08 H3 histone family member 3B [Source:HGNC Symbol;Acc:HGNC:4765]
79. HSPA8 ENSG00000109971 549.03 1401.89 heat shock protein family A (Hsp70) member 8 [Source:HGNC Symbol;Acc:HGNC:5241]
80. RPS14P3 546.53 1395.50 ribosomal protein S14 pseudogene 3
81. RPS15 ENSG00000115268 544.03 1389.12 ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:10388]
82. SPARC ENSG00000113140 541.53 1382.74 secreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]
83. HNRNPH1 ENSG00000169045, ENSG00000284254 540.28 1379.55 heterogeneous nuclear ribonucleoprotein H1 [Source:HGNC Symbol;Acc:HGNC:5041]
84. HMGN1 ENSG00000205581 532.77 1360.37 high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:HGNC:4984]
85. ATP5G2 529.02 1350.79 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9), transcript variant X3
86. ITM2B ENSG00000136156 529.02 1350.79 integral membrane protein 2B [Source:HGNC Symbol;Acc:HGNC:6174]
87. RPLP0 ENSG00000089157 527.77 1347.60 ribosomal protein lateral stalk subunit P0 [Source:HGNC Symbol;Acc:HGNC:10371]
88. TPM4 ENSG00000167460 505.26 1290.13 tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
89. RPL39 ENSG00000198918 487.75 1245.42 ribosomal protein L39 [Source:HGNC Symbol;Acc:HGNC:10350]
90. HNRNPA1 ENSG00000135486 476.49 1216.66 heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:HGNC:5031]
91. RPL4 ENSG00000174444 476.49 1216.66 ribosomal protein L4 [Source:HGNC Symbol;Acc:HGNC:10353]
92. PRKAR1A ENSG00000108946 471.49 1203.90 protein kinase cAMP-dependent type I regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9388]
93. RPS13 ENSG00000110700 462.74 1181.56 ribosomal protein S13 [Source:HGNC Symbol;Acc:HGNC:10386]
94. TRMT112 ENSG00000173113 462.74 1181.56 tRNA methyltransferase subunit 11-2 [Source:HGNC Symbol;Acc:HGNC:26940]
95. RPL26 ENSG00000161970 461.49 1178.36 ribosomal protein L26 [Source:HGNC Symbol;Acc:HGNC:10327]
96. SRP14 ENSG00000140319 458.99 1171.98 signal recognition particle 14 [Source:HGNC Symbol;Acc:HGNC:11299]
97. KCTD12 ENSG00000178695 457.74 1168.79 potassium channel tetramerization domain containing 12 [Source:HGNC Symbol;Acc:HGNC:14678]
98. RPS19 ENSG00000105372 456.48 1165.57 ribosomal protein S19 [Source:HGNC Symbol;Acc:HGNC:10402]
99. SPINT2 ENSG00000167642 456.48 1165.57 serine peptidase inhibitor, Kunitz type 2 [Source:HGNC Symbol;Acc:HGNC:11247]
100. H2AFZ ENSG00000164032 455.23 1162.38 H2A histone family member Z [Source:HGNC Symbol;Acc:HGNC:4741]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA