Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ube3b

Gene Name Gene ID Reads Annotation
ube3b ENSDARG00000061960 978 ubiquitin protein ligase E3B [Source:ZFIN;Acc:ZDB-GENE-060526-231]










Genes with expression patterns similar to ube3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ube3b ENSDARG00000061960 978 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin protein ligase E3B [Source:ZFIN;Acc:ZDB-GENE-060526-231]
2. SVIL SVIL 2589 2.389 - - - - - - 0.718 0.776 0.895
3. cstf1 ENSDARG00000044820 1663 1.851 - - - - - - - 0.916 0.935 cleavage stimulation factor, 3' pre-RNA, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2958]
4. CR847925.1 CR847925.1 835 1.802 - - - - - - - 0.848 0.954
5. arhgap42a ENSDARG00000056619, ENSDARG00000116136 865 1.788 - - - - - - - 0.832 0.956 Rho GTPase activating protein 42a [Source:ZFIN;Acc:ZDB-GENE-030131-8077]
6. zgc:136439 ENSDARG00000009267 720 1.783 - - - - - - - 0.822 0.961 zgc:136439 [Source:ZFIN;Acc:ZDB-GENE-060421-2858]
7. smim8 ENSDARG00000071040 622 1.777 - 0.813 - - - - - - 0.964 small integral membrane protein 8 [Source:ZFIN;Acc:ZDB-GENE-050522-423]
8. E2F6 E2F6 1271 1.761 - - - - - - - 0.809 0.952
9. mmp9 ENSDARG00000042816 298 1.735 - 0.781 - - - - - - 0.954 matrix metallopeptidase 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2132]
10. ccdc90b ENSDARG00000044626, ENSDARG00000110887 501 1.704 - - - - - - 0.745 - 0.959 coiled-coil domain containing 90B [Source:ZFIN;Acc:ZDB-GENE-040724-162]
11. snap91 ENSDARG00000098809 844 1.7 - - - - - 0.744 - - 0.956 synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
12. PACS1_1 PACS1_1 1264 1.696 - - - - - 0.727 - - 0.969
13. PVRL4 1691 1.687 - - - - - - - 0.747 0.940 poliovirus receptor-related 4
14. narfl ENSDARG00000062216 768 1.685 - - - - - - - 0.721 0.964 nuclear prelamin A recognition factor-like [Source:ZFIN;Acc:ZDB-GENE-070209-119]
15. HIP1R HIP1R 490 1.671 - - - - - - 0.708 - 0.963
16. ephb4a ENSDARG00000100725 1749 1.642 - - - - - - - 0.718 0.924 eph receptor B4a [Source:ZFIN;Acc:ZDB-GENE-990415-62]
17. mgaa ENSDARG00000078784 1344 1.642 - 0.809 - - - - - 0.833 - MGA, MAX dimerization protein a [Source:ZFIN;Acc:ZDB-GENE-030603-1]
18. nsd1a ENSDARG00000060016 2974 1.64 - - - - - - - 0.873 0.767 nuclear receptor binding SET domain protein 1a [Source:ZFIN;Acc:ZDB-GENE-080519-3]
19. rnd3a ENSDARG00000076799 4705 1.637 - - - - - 0.801 - 0.836 - Rho family GTPase 3a [Source:ZFIN;Acc:ZDB-GENE-010319-40]
20. fam219aa ENSDARG00000016396 1788 1.634 - - - - - - 0.708 0.926 - family with sequence similarity 219, member Aa [Source:ZFIN;Acc:ZDB-GENE-040801-110]
21. atp6ap1b ENSDARG00000037153 3970 1.628 - - - - - - - 0.701 0.927 ATPase H+ transporting accessory protein 1b [Source:ZFIN;Acc:ZDB-GENE-020423-2]
22. pik3r1 ENSDARG00000038524 3615 1.625 - - - - - - 0.701 0.924 - phosphoinositide-3-kinase, regulatory subunit 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-1280]
23. gkap1 ENSDARG00000068123 2645 1.614 - 0.723 - - - - - - 0.891 G kinase anchoring protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2485]
24. hoxa9a ENSDARG00000105013 1509 1.608 - - - - - 0.751 - - 0.857 homeobox A9a [Source:ZFIN;Acc:ZDB-GENE-000823-1]
25. sb:cb54 sb:cb54 475 1.607 0.764 - - - - - - 0.843 -
26. ppp4r2b ENSDARG00000053447 2506 1.603 - - - - - 0.727 - - 0.876 protein phosphatase 4, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3008]
27. galnt18b ENSDARG00000059438 115 1.603 0.735 0.868 - - - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b [Source:ZFIN;Acc:ZDB-GENE-091014-1]
28. sall1a ENSDARG00000074319, ENSDARG00000111696 1486 1.602 - 0.810 - - - 0.792 - - - spalt-like transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-020228-2]
29. zbtb2b ENSDARG00000028086, ENSDARG00000110834 1609 1.602 - 0.803 - - - - - - 0.799 zinc finger and BTB domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2753]
30. gstm gstm 4064 1.595 - - - - - - - 0.772 0.823
31. sh3gl3a ENSDARG00000013360 3602 1.594 - - - - - - - 0.798 0.796 SH3-domain GRB2-like 3a [Source:ZFIN;Acc:ZDB-GENE-070112-242]
32. txndc11 ENSDARG00000101291 589 1.593 - 0.730 - - - - - 0.863 - thioredoxin domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-041008-112]
33. actr1 ENSDARG00000011611 3879 1.584 - - - - - - - 0.712 0.872 ARP1 actin related protein 1, centractin [Source:ZFIN;Acc:ZDB-GENE-040426-2695]
34. RPS6KC1 ENSDARG00000104103 746 1.58 - 0.760 - - - - - 0.820 - ribosomal protein S6 kinase polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-081031-83]
35. ZNF618 ENSDARG00000071469 2347 1.562 - 0.704 - - - - - 0.858 - zinc finger protein 618 [Source:ZFIN;Acc:ZDB-GENE-030131-2063]
36. pdcd6ip ENSDARG00000025269 2522 1.561 - - - - - - 0.704 - 0.857 programmed cell death 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2678]
37. wsb1 ENSDARG00000021343 3828 1.559 - 0.749 - - - - - - 0.810 WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
38. CABZ01051991.1 CABZ01051991.1 346 1.546 - 0.790 - - - 0.756 - - -
39. stat3 ENSDARG00000022712 346 1.546 0.716 - - - - - - 0.830 - signal transducer and activator of transcription 3 (acute-phase response factor) [Source:ZFIN;Acc:ZDB-GENE-980526-68]
40. mcm6 ENSDARG00000057683, ENSDARG00000113317 6591 1.541 - - - - - 0.732 - 0.809 - minichromosome maintenance complex component 6 [Source:ZFIN;Acc:ZDB-GENE-030909-6]
41. elavl1 11672 1.541 - - - - - 0.827 - - 0.714 ELAV like RNA binding protein 1, transcript variant X3
42. ripk4 ENSDARG00000043211 775 1.534 - 0.731 - - - - - - 0.803 receptor-interacting serine-threonine kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2042]
43. smurf2 ENSDARG00000038067 2057 1.531 0.716 - - - - - - 0.815 - SMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
44. plekhj1 ENSDARG00000025593 696 1.53 - 0.758 - - - - - 0.772 - pleckstrin homology domain containing, family J member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2480]
45. hapln3 ENSDARG00000045802, ENSDARG00000116387 2242 1.529 - 0.705 - - - - - - 0.824 hyaluronan and proteoglycan link protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2089]
46. ddx19 ENSDARG00000005699 4602 1.524 - - - - - 0.739 - 0.785 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
47. CWC15 ENSDARG00000013382 8969 1.518 - - - - - 0.713 - - 0.805 CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040625-10]
48. tmed4 ENSDARG00000024954 3476 1.516 - - - - - - - 0.767 0.749 transmembrane p24 trafficking protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-140]
49. ext2 ENSDARG00000056648 1322 1.508 - 0.742 - - - 0.766 - - - exostosin glycosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-041124-3]
50. timp2a ENSDARG00000061226, ENSDARG00000114336 1756 1.505 0.789 - - - - - - - 0.716 TIMP metallopeptidase inhibitor 2a [Source:ZFIN;Acc:ZDB-GENE-030612-1]
51. zgc:66475 ENSDARG00000099519 1348 1.503 - 0.719 - - - - - 0.784 - zgc:66475 [Source:ZFIN;Acc:ZDB-GENE-040426-1644]
52. rnf121 ENSDARG00000060282 1809 1.499 - - - - - - 0.704 0.795 - ring finger protein 121 [Source:ZFIN;Acc:ZDB-GENE-050809-3]
53. tdg tdg 3269 1.496 - - - - - 0.756 - - 0.740
54. aplnrb ENSDARG00000036670 546 1.487 0.781 - - - - - - 0.706 - apelin receptor b [Source:ZFIN;Acc:ZDB-GENE-050913-90]
55. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.471 - - - - - 0.720 - 0.751 - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
56. NAT16 ENSDARG00000086222 4682 1.46 0.749 - - - - 0.711 - - - N-acetyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-030219-43]
57. si:dkey-92i17.2 ENSDARG00000093612 707 1.459 - 0.713 - - - - - 0.746 - si:dkey-92i17.2 [Source:ZFIN;Acc:ZDB-GENE-030131-6759]
58. nck2b ENSDARG00000043361 908 1.435 0.728 - - - - 0.707 - - - NCK adaptor protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-235]
59. atp1b3b ENSDARG00000042837 5163 1.431 0.726 - - - - 0.705 - - - ATPase Na+/K+ transporting subunit beta 3b [Source:ZFIN;Acc:ZDB-GENE-001127-1]
60. TLN2 TLN2 359 0.971 - - - - - - - - 0.971
61. coil ENSDARG00000040070 863 0.969 - - - - - - - - 0.969 coilin p80 [Source:ZFIN;Acc:ZDB-GENE-000330-8]
62. ZNF337_22 ZNF337_22 322 0.968 - - - - - - - - 0.968
63. panx1a ENSDARG00000025285 352 0.968 - - - - - - - - 0.968 pannexin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-766]
64. dlg5a ENSDARG00000074059 1834 0.967 - - - - - - - - 0.967 discs, large homolog 5a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-3149]
65. si:dkeyp-4f2.5 si:dkeyp-4f2.5 232 0.967 - - - - - - - - 0.967
66. twistnb ENSDARG00000024416 1077 0.966 - - - - - - - - 0.966 TWIST neighbor [Source:ZFIN;Acc:ZDB-GENE-041007-3]
67. CACUL1 ENSDARG00000021885 691 0.965 - - - - - - - - 0.965 CDK2 associated cullin domain 1 [Source:ZFIN;Acc:ZDB-GENE-170113-2]
68. sin3ab ENSDARG00000059812 2140 0.964 - - - - - - - - 0.964 SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
69. ppp6r2b ENSDARG00000069654 323 0.964 - - - - - - - - 0.964 protein phosphatase 6, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-070705-441]
70. nudt3b ENSDARG00000042123 311 0.964 - - - - - - - - 0.964 nudix (nucleoside diphosphate linked moiety X)-type motif 3b [Source:ZFIN;Acc:ZDB-GENE-041010-128]
71. ing2 ENSDARG00000104907 1336 0.963 - - - - - - - - 0.963 inhibitor of growth family, member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-147]
72. RNF5 ENSDARG00000075606 1730 0.963 - - - - - - - - 0.963 ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
73. FBXO33 ENSDARG00000075400 1164 0.963 - - - - - - - - 0.963 F-box protein 33 [Source:ZFIN;Acc:ZDB-GENE-100618-2]
74. rbpja ENSDARG00000003398 1309 0.963 - - - - - - - - 0.963 recombination signal binding protein for immunoglobulin kappa J region a [Source:ZFIN;Acc:ZDB-GENE-031117-1]
75. slc25a23a ENSDARG00000005690 824 0.963 - - - - - - - - 0.963 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
76. nol7 ENSDARG00000075795 1559 0.963 - - - - - - - - 0.963 nucleolar protein 7 [Source:ZFIN;Acc:ZDB-GENE-030131-9100]
77. sox8 sox8 109 0.963 - - - - - - - - 0.963
78. m6pr ENSDARG00000018432 1411 0.963 - - - - - - - - 0.963 mannose-6-phosphate receptor (cation dependent) [Source:ZFIN;Acc:ZDB-GENE-040426-2285]
79. U6 U6 931 0.963 - - - - - - - - 0.963
80. prkra ENSDARG00000076718 606 0.962 - - - - - - - - 0.962 protein kinase, interferon-inducible double stranded RNA dependent activator [Source:ZFIN;Acc:ZDB-GENE-050309-206]
81. cntn4 ENSDARG00000098161, ENSDARG00000109387 437 0.962 - - - - - - - - 0.962 contactin 4 [Source:ZFIN;Acc:ZDB-GENE-060929-776]
82. def6b ENSDARG00000044524 99 0.962 - - - - - - - - 0.962 differentially expressed in FDCP 6b homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-110408-59]
83. mylkb ENSDARG00000004753 95 0.962 - - - - - - - - 0.962 myosin light chain kinase b [Source:ZFIN;Acc:ZDB-GENE-041111-150]
84. zgc:154006 ENSDARG00000061797 152 0.962 - - - - - - - - 0.962 zgc:154006 [Source:ZFIN;Acc:ZDB-GENE-061013-134]
85. ptpn2a ENSDARG00000016481 493 0.962 - - - - - - - - 0.962 protein tyrosine phosphatase, non-receptor type 2, a [Source:ZFIN;Acc:ZDB-GENE-040426-1196]
86. C19H18orf21 C19H18orf21 338 0.961 - - - - - - - - 0.961
87. acp1 ENSDARG00000076486 3275 0.961 - - - - - - - - 0.961 acid phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-050327-12]
88. PCDH20 ENSDARG00000036424, ENSDARG00000101910 90 0.961 - - - - - - - - 0.961 protocadherin 20 [Source:NCBI gene;Acc:100007362]
89. stmn4l ENSDARG00000043932 654 0.961 - - - - - - - - 0.961 stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
90. insig1 ENSDARG00000010658, ENSDARG00000113413 1811 0.961 - - - - - - - - 0.961 insulin induced gene 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6121]
91. HTR1E 103 0.961 - - - - - - - - 0.961 5-hydroxytryptamine receptor 1E
92. pdzd2 ENSDARG00000059801, ENSDARG00000109983 1634 0.961 - - - - - - - - 0.961 PDZ domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-297]
93. MON1B_1 MON1B_1 697 0.961 - - - - - - - - 0.961
94. msxa msxa 263 0.961 - - - - - - - - 0.961
95. mpv17 ENSDARG00000032431 1225 0.961 - - - - - - - - 0.961 MpV17 mitochondrial inner membrane protein [Source:ZFIN;Acc:ZDB-GENE-040426-1168]
96. LDLR LDLR 838 0.961 - - - - - - - - 0.961
97. slc6a19b ENSDARG00000056719 140 0.961 - - - - - - - - 0.961 solute carrier family 6 (neutral amino acid transporter), member 19b [Source:ZFIN;Acc:ZDB-GENE-030131-4755]
98. pfkfb2a ENSDARG00000023840 184 0.961 - - - - - - - - 0.961 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2a [Source:ZFIN;Acc:ZDB-GENE-040426-966]
99. si:ch211-135f11.1 166 0.96 - - - - - - - - 0.960 si:ch211-135f11.1, transcript variant X3
100. csrp1a ENSDARG00000006603 5188 0.96 - - - - - - - - 0.960 cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]

There are 1439 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA