Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for smad1

Gene Name Gene ID Reads Annotation
smad1 ENSDARG00000027199, ENSDARG00000112617, ENSDARG00000115674 2791 SMAD family member 1 [Source:ZFIN;Acc:ZDB-GENE-991119-8]










Genes with expression patterns similar to smad1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. smad1 ENSDARG00000027199, ENSDARG00000112617, ENSDARG00000115674 2791 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMAD family member 1 [Source:ZFIN;Acc:ZDB-GENE-991119-8]
2. dnajc19 ENSDARG00000044420 1756 1.621 - 0.826 - - - - 0.795 - - DnaJ (Hsp40) homolog, subfamily C, member 19 [Source:ZFIN;Acc:ZDB-GENE-040426-1730]
3. CR388095.3 CR388095.3 2548 1.528 - - - - - 0.710 - 0.818 -
4. pptc7b ENSDARG00000052658 1756 1.524 - 0.746 - - - - 0.778 - - PTC7 protein phosphatase homolog b [Source:ZFIN;Acc:ZDB-GENE-081105-111]
5. sdhaf2 ENSDARG00000062971, ENSDARG00000114840 1320 1.509 - 0.756 - - - - 0.753 - - succinate dehydrogenase complex assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7564]
6. grsf1 ENSDARG00000053021 2752 1.505 - 0.802 - - - - 0.703 - - G-rich RNA sequence binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-060825-196]
7. lrpprc ENSDARG00000043970 3847 1.497 - 0.737 - - - - 0.760 - - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
8. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 1.494 - 0.763 - - - - 0.731 - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
9. trim45 ENSDARG00000076781 578 1.493 - 0.719 - 0.774 - - - - - tripartite motif containing 45 [Source:ZFIN;Acc:ZDB-GENE-070912-389]
10. ehd1b ENSDARG00000014793, ENSDARG00000110243, ENSDARG00000110919 2496 1.493 - 0.731 - - - - 0.762 - - EH-domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2069]
11. rrp9 ENSDARG00000041991, ENSDARG00000112140 1150 1.491 - 0.700 - 0.791 - - - - - ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-060427-1]
12. zranb1b ENSDARG00000063190, ENSDARG00000110714 1816 1.486 - 0.746 - - - - 0.740 - - zinc finger, RAN-binding domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-061110-94]
13. spryd4 ENSDARG00000023309, ENSDARG00000114062 2091 1.479 - 0.710 - - - - 0.769 - - SPRY domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040718-180]
14. NFATC3 NFATC3 1712 1.464 - 0.701 - - - - 0.763 - -
15. ier3ip1 ENSDARG00000039601 5529 1.456 - - - - - - 0.719 0.737 - immediate early response 3 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-050506-106]
16. stau1 ENSDARG00000044182, ENSDARG00000115476 6121 1.446 - 0.723 - - - - 0.723 - - staufen double-stranded RNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6372]
17. rbms1a ENSDARG00000074023 2742 1.44 0.703 0.737 - - - - - - - RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
18. CYHR1 ENSDARG00000061057 2625 1.432 - 0.717 - - - - 0.715 - - cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
19. e2f7 ENSDARG00000008986 1439 1.43 - 0.702 - - - - - 0.728 - E2F transcription factor 7 [Source:ZFIN;Acc:ZDB-GENE-030131-3527]
20. pl10 pl10 10795 1.426 - 0.717 - - - - 0.709 - -
21. mrps2 ENSDARG00000103198 2410 0.864 - 0.864 - - - - - - - mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
22. rbmx ENSDARG00000014244 3445 0.861 - 0.861 - - - - - - - RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
23. qars ENSDARG00000010316 2715 0.853 - 0.853 - - - - - - - glutaminyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-1011]
24. mccc1 ENSDARG00000102538, ENSDARG00000115996 2069 0.847 - 0.847 - - - - - - - methylcrotonoyl-CoA carboxylase 1 (alpha) [Source:ZFIN;Acc:ZDB-GENE-050208-450]
25. cap2 ENSDARG00000104478 3266 0.846 - 0.846 - - - - - - - CAP, adenylate cyclase-associated protein, 2 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1758]
26. cdc42ep4b ENSDARG00000045036 1295 0.845 - - - - - - - 0.845 - CDC42 effector protein (Rho GTPase binding) 4b [Source:ZFIN;Acc:ZDB-GENE-091008-2]
27. mrps9 ENSDARG00000061505 1636 0.839 - 0.839 - - - - - - - mitochondrial ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-060825-257]
28. rpf2 ENSDARG00000043960 2719 0.839 - 0.839 - - - - - - - ribosome production factor 2 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2501]
29. si:dkey-25o16.2 1990 0.838 - 0.838 - - - - - - - si:dkey-25o16.2, transcript variant X1
30. tgm1l1 ENSDARG00000102106 1437 0.836 - - - - - - 0.836 - - transglutaminase 1 like 1 [Source:ZFIN;Acc:ZDB-GENE-060503-139]
31. alpk2 ENSDARG00000079637 1483 0.836 - 0.836 - - - - - - - alpha-kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1868]
32. si:ch1073-95o12.1 si:ch1073-95o12.1 734 0.835 - - - - - - 0.835 - -
33. cops8 ENSDARG00000024846, ENSDARG00000115974 3053 0.834 - 0.834 - - - - - - - COP9 signalosome subunit 8 [Source:ZFIN;Acc:ZDB-GENE-040426-982]
34. tprkb ENSDARG00000014941 686 0.831 - 0.831 - - - - - - - Tp53rk binding protein [Source:ZFIN;Acc:ZDB-GENE-041114-68]
35. st5 ENSDARG00000037363, ENSDARG00000112276 1797 0.829 - 0.829 - - - - - - - suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
36. pde6d ENSDARG00000074892, ENSDARG00000115562, ENSDARG00000115620 506 0.827 - - - - - - - 0.827 - phosphodiesterase 6D, cGMP-specific, rod, delta [Source:ZFIN;Acc:ZDB-GENE-040718-463]
37. ect2 ENSDARG00000007278 1193 0.826 - - - - - - - 0.826 - epithelial cell transforming 2 [Source:ZFIN;Acc:ZDB-GENE-040831-2]
38. CACFD1 ENSDARG00000090818 1298 0.825 - - - - - - - 0.825 - calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
39. aldh1a2 ENSDARG00000053493, ENSDARG00000113122 1679 0.825 - 0.825 - - - - - - - aldehyde dehydrogenase 1 family, member A2 [Source:ZFIN;Acc:ZDB-GENE-011010-3]
40. ssb ENSDARG00000029252 3394 0.824 - 0.824 - - - - - - - Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
41. cpne3 ENSDARG00000104177, ENSDARG00000109906, ENSDARG00000110868 1084 0.823 - - - - - - 0.823 - - copine III [Source:ZFIN;Acc:ZDB-GENE-040426-763]
42. nnt ENSDARG00000023536 7357 0.822 - - - - - - 0.822 - - nicotinamide nucleotide transhydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2592]
43. CASKIN2_1 CASKIN2_1 2299 0.822 - 0.822 - - - - - - -
44. ARHGAP32 ARHGAP32 670 0.821 - - - - - - - 0.821 -
45. eif4h ENSDARG00000042252 6742 0.821 - 0.821 - - - - - - - eukaryotic translation initiation factor 4h [Source:ZFIN;Acc:ZDB-GENE-010328-19]
46. ube2d2l ENSDARG00000099749 1462 0.82 - - - - - - - 0.820 - ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like [Source:ZFIN;Acc:ZDB-GENE-030131-7384]
47. ndufab1b ENSDARG00000014915 12796 0.819 - 0.819 - - - - - - - NADH:ubiquinone oxidoreductase subunit AB1b [Source:ZFIN;Acc:ZDB-GENE-030131-4437]
48. TRIP10 TRIP10 1079 0.818 - 0.818 - - - - - - -
49. dapk1 ENSDARG00000060093 351 0.817 - - - - - - - 0.817 - death-associated protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-060526-177]
50. dda1 ENSDARG00000076074, ENSDARG00000109308 1993 0.817 - - - - - - 0.817 - - DET1 and DDB1 associated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2137]
51. MAPRE2 ENSDARG00000099943 3041 0.816 - - - - - - - 0.816 - microtubule-associated protein, RP/EB family, member 2 [Source:ZFIN;Acc:ZDB-GENE-071004-41]
52. prkacaa ENSDARG00000100349 2711 0.814 - - - - - - 0.814 - - protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a [Source:ZFIN;Acc:ZDB-GENE-050114-6]
53. CU929408.1 CU929408.1 714 0.811 - 0.811 - - - - - - -
54. polr2gl ENSDARG00000056127 1771 0.809 - - - - - - - 0.809 - polymerase (RNA) II (DNA directed) polypeptide G-like [Source:ZFIN;Acc:ZDB-GENE-030131-2808]
55. WU:FC32F04 WU:FC32F04 2525 0.809 - 0.809 - - - - - - -
56. rcbtb2 ENSDARG00000090687 1658 0.808 - 0.808 - - - - - - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:ZFIN;Acc:ZDB-GENE-071016-3]
57. zgc:153629 zgc:153629 1121 0.807 - - - - - - 0.807 - -
58. atf7ip ENSDARG00000069619 5495 0.807 - 0.807 - - - - - - - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
59. slc25a11 ENSDARG00000035741 3377 0.805 - - - - - - 0.805 - - solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 [Source:ZFIN;Acc:ZDB-GENE-040625-79]
60. ube2nb ENSDARG00000045877 4583 0.804 - 0.804 - - - - - - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
61. pcyt1aa ENSDARG00000011233 1985 0.804 - 0.804 - - - - - - - phosphate cytidylyltransferase 1, choline, alpha a [Source:ZFIN;Acc:ZDB-GENE-050417-108]
62. ndufa2 ENSDARG00000021984 4754 0.804 - - - - - - 0.804 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:ZFIN;Acc:ZDB-GENE-050522-377]
63. brd2a ENSDARG00000022280 3481 0.804 - 0.804 - - - - - - - bromodomain containing 2a [Source:ZFIN;Acc:ZDB-GENE-990415-248]
64. ogfod1 ENSDARG00000036061 417 0.804 - 0.804 - - - - - - - 2-oxoglutarate and iron-dependent oxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3294]
65. ppap2b ppap2b 2900 0.803 - - - - - - - 0.803 -
66. hars ENSDARG00000003693 7217 0.802 - - - - - - 0.802 - - histidyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-040912-152]
67. dnmbp ENSDARG00000074121 2711 0.802 - - - - - - - 0.802 - dynamin binding protein [Source:ZFIN;Acc:ZDB-GENE-101026-2]
68. HECTD4 ENSDARG00000101079 952 0.802 - - - - - - 0.802 - - HECT domain E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:26611]
69. yth2 yth2 3716 0.801 - 0.801 - - - - - - -
70. col4a2 ENSDARG00000104110 947 0.801 - 0.801 - - - - - - - collagen, type IV, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070725-3]
71. lnpa ENSDARG00000063646, ENSDARG00000115902 2373 0.8 - 0.800 - - - - - - - limb and neural patterns a [Source:ZFIN;Acc:ZDB-GENE-030131-4960]
72. Sep-15 Sep-15 5644 0.8 - - - - - - 0.800 - -
73. TBC1D13 815 0.8 - 0.800 - - - - - - - TBC1 domain family, member 13
74. rab30 ENSDARG00000037884 1077 0.799 - 0.799 - - - - - - - RAB30, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040718-250]
75. eif2s3 ENSDARG00000008292 17051 0.798 - 0.798 - - - - - - - eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
76. galnt1 ENSDARG00000061335 1648 0.797 - 0.797 - - - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2360]
77. eif4ea ENSDARG00000077012, ENSDARG00000115520 979 0.797 - 0.797 - - - - - - - eukaryotic translation initiation factor 4ea [Source:ZFIN;Acc:ZDB-GENE-040413-1]
78. rprd1b ENSDARG00000038113 1105 0.796 - 0.796 - - - - - - - regulation of nuclear pre-mRNA domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-030131-355]
79. TSPAN4 TSPAN4 941 0.795 - 0.795 - - - - - - -
80. thoc5 ENSDARG00000038290 1489 0.793 - 0.793 - - - - - - - THO complex 5 [Source:ZFIN;Acc:ZDB-GENE-030131-3789]
81. plagx ENSDARG00000036855 3768 0.792 - - - - - - - 0.792 - pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
82. AL954696.1 ENSDARG00000078442 768 0.791 - 0.791 - - - - - - - NOP9 nucleolar protein [Source:NCBI gene;Acc:100332577]
83. ash1l ENSDARG00000070981 2520 0.791 - 0.791 - - - - - - - ash1 (absent, small, or homeotic)-like (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6101]
84. ticrr ENSDARG00000045605 739 0.791 - 0.791 - - - - - - - TopBP1-interacting, checkpoint, and replication regulator [Source:ZFIN;Acc:ZDB-GENE-040728-1]
85. SH3GLB1 SH3GLB1 2274 0.791 - 0.791 - - - - - - -
86. cbx3a ENSDARG00000003860 4922 0.789 - 0.789 - - - - - - - chromobox homolog 3a (HP1 gamma homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-1158]
87. rbms2b ENSDARG00000056150, ENSDARG00000115483 2104 0.789 - 0.789 - - - - - - - RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
88. txn2 ENSDARG00000034777 4071 0.789 - 0.789 - - - - - - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
89. emc6 ENSDARG00000035282 4981 0.789 - 0.789 - - - - - - - ER membrane protein complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9164]
90. plekhj1 ENSDARG00000025593 696 0.787 - - - - - - - 0.787 - pleckstrin homology domain containing, family J member 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2480]
91. polr1b ENSDARG00000077469, ENSDARG00000115880 313 0.787 - 0.787 - - - - - - - RNA polymerase I subunit B [Source:ZFIN;Acc:ZDB-GENE-040426-1598]
92. BX005175.1 ENSDARG00000112442 441 0.787 - - - - - - - 0.787 - protein kinase C, delta b [Source:NCBI gene;Acc:100150844]
93. apex1 ENSDARG00000045843 6345 0.786 - 0.786 - - - - - - - APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
94. ubr5 ENSDARG00000018192 9267 0.786 - 0.786 - - - - - - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
95. CABZ01065679.1 ENSDARG00000098342 99 0.786 - - - 0.786 - - - - -
96. ppp6r3 ENSDARG00000013379 2912 0.785 - 0.785 - - - - - - - protein phosphatase 6, regulatory subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3251]
97. ATAD2 ENSDARG00000076590 411 0.785 - 0.785 - - - - - - - ATPase family, AAA domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7003]
98. pin4 ENSDARG00000004527 3598 0.785 - 0.785 - - - - - - - protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) [Source:ZFIN;Acc:ZDB-GENE-050522-117]
99. cisd2 ENSDARG00000052703 2841 0.784 - - - - - - - 0.784 - CDGSH iron sulfur domain 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1381]
100. CU571162.1 CU571162.1 652 0.784 - 0.784 - - - - - - -

There are 570 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA