Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for scaf4a

Gene Name Gene ID Reads Annotation
scaf4a ENSDARG00000077093 2408 SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]










Genes with expression patterns similar to scaf4a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. scaf4a ENSDARG00000077093 2408 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
2. ogt.1 ENSDARG00000099455, ENSDARG00000105243 3274 2.475 - - - - 0.808 - 0.794 0.873 - O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9631]
3. smarca5 ENSDARG00000052348 15433 2.381 - 0.730 - - - - 0.755 0.896 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
4. camlg ENSDARG00000100409 2157 2.343 - 0.798 - 0.701 0.844 - - - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
5. atf4b2 atf4b2 4734 2.313 - - - - 0.767 - 0.749 - 0.797
6. nup210 ENSDARG00000063333 995 2.291 - 0.760 - - 0.829 - 0.702 - - nucleoporin 210 [Source:ZFIN;Acc:ZDB-GENE-050208-132]
7. cwf19l2 ENSDARG00000091760 1372 2.228 - - - 0.709 0.799 - 0.720 - - CWF19-like 2, cell cycle control (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050913-1]
8. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 1.846 - - - - 0.871 - - 0.975 - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
9. klhl40b ENSDARG00000019125 3633 1.777 0.828 - - - - - - 0.949 - kelch-like family member 40b [Source:ZFIN;Acc:ZDB-GENE-060227-1]
10. necap2 ENSDARG00000046002 4372 1.764 - - - - 0.804 - - 0.960 - NECAP endocytosis associated 2 [Source:ZFIN;Acc:ZDB-GENE-050522-67]
11. ddx42 ENSDARG00000037928 1659 1.761 - - - - 0.795 - - 0.966 - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
12. PIK3CA_1 PIK3CA_1 4065 1.733 - - - - 0.831 - - 0.902 -
13. tmem50a ENSDARG00000015757 3244 1.733 - - - - - - 0.777 0.956 - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
14. suz12a ENSDARG00000070256 2229 1.725 - - - - - - 0.745 0.980 - SUZ12, polycomb repressive complex 2 subunit a [Source:ZFIN;Acc:ZDB-GENE-040801-36]
15. rtf1 ENSDARG00000008947 6596 1.717 - - - - 0.880 - - 0.837 - RTF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6778]
16. mrps18b ENSDARG00000007065 2121 1.713 - 0.735 - - - - - 0.978 - mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
17. aurkb ENSDARG00000037640 4874 1.709 - - - - - - 0.893 - 0.816 aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
18. puf60a ENSDARG00000032175 5618 1.701 - 0.718 - - - - - 0.983 - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
19. lbr ENSDARG00000014013 4835 1.7 - - - - - - 0.740 0.960 - lamin B receptor [Source:ZFIN;Acc:ZDB-GENE-030804-11]
20. FP016176.1 FP016176.1 7030 1.699 - 0.823 - - - - - 0.876 -
21. hat1 ENSDARG00000034916 5712 1.699 - - - - - - - 0.882 0.817 histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
22. wu:fb17g07 wu:fb17g07 10567 1.693 - 0.800 - - - - - 0.893 -
23. slit3 ENSDARG00000034268, ENSDARG00000111488, ENSDARG00000115194 3999 1.691 - 0.746 - - - - - 0.945 - slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
24. TNPO2 ENSDARG00000042887 2290 1.688 - - - - 0.784 - - 0.904 - transportin 2 [Source:HGNC Symbol;Acc:HGNC:19998]
25. kmt2cb ENSDARG00000075560 4816 1.681 - 0.866 - - - - - - 0.815 lysine (K)-specific methyltransferase 2Cb [Source:ZFIN;Acc:ZDB-GENE-070705-340]
26. fam46c 1913 1.674 0.722 - - - - - - 0.952 - family with sequence similarity 46, member C
27. psmd8 ENSDARG00000020454 6645 1.662 - - - - - - - 0.852 0.810 proteasome 26S subunit, non-ATPase 8 [Source:ZFIN;Acc:ZDB-GENE-040625-136]
28. rasal2 ENSDARG00000036257 3223 1.662 - - 0.724 - - - - 0.938 - RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
29. ppapdc3 ppapdc3 4924 1.66 0.778 - - - - - - 0.882 -
30. uros ENSDARG00000027491 1147 1.655 - 0.724 - - - - - 0.931 - uroporphyrinogen III synthase [Source:ZFIN;Acc:ZDB-GENE-040323-2]
31. si:ch211-288g17.3 ENSDARG00000070959 2425 1.649 - 0.788 - - 0.861 - - - - si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
32. synpo2lb ENSDARG00000078696 2361 1.648 0.714 - - - - - - 0.934 - synaptopodin 2-like b [Source:ZFIN;Acc:ZDB-GENE-090828-5]
33. gpx1a ENSDARG00000018146, ENSDARG00000114736 4652 1.646 - - - - 0.798 - - 0.848 - glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
34. cdkn2aipnl ENSDARG00000053395 5107 1.644 - 0.823 - - - - - - 0.821 CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
35. u2af2a ENSDARG00000012505 2920 1.643 - - - - - - 0.839 - 0.804 U2 small nuclear RNA auxiliary factor 2a [Source:ZFIN;Acc:ZDB-GENE-050706-131]
36. helz ENSDARG00000030560 3259 1.639 - - - - - - 0.747 0.892 - helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
37. papola ENSDARG00000009585 9567 1.638 - 0.753 - - - - 0.885 - - poly(A) polymerase alpha [Source:ZFIN;Acc:ZDB-GENE-030131-3507]
38. igsf9b ENSDARG00000010408 786 1.628 - - - - 0.887 0.741 - - - immunoglobulin superfamily, member 9b [Source:ZFIN;Acc:ZDB-GENE-060810-28]
39. srfbp1 ENSDARG00000075323 2262 1.625 - - - 0.761 - - 0.864 - - serum response factor binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1991]
40. ube2f ENSDARG00000025754 1946 1.623 - - - - 0.838 - 0.785 - - ubiquitin-conjugating enzyme E2F (putative) [Source:ZFIN;Acc:ZDB-GENE-040426-2557]
41. crebbpa ENSDARG00000104609 1739 1.622 - - - - - - 0.901 - 0.721 CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
42. luc7l3 ENSDARG00000014366 4416 1.617 - 0.796 - - - - 0.821 - - LUC7-like 3 pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-060616-375]
43. MSL1_1 MSL1_1 2365 1.617 - - - - 0.751 - 0.866 - -
44. smg7 ENSDARG00000060767 2759 1.616 - - - - - - 0.733 0.883 - SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]
45. r3hdm1 ENSDARG00000101458 5241 1.613 - - - - - - 0.789 0.824 - R3H domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7119]
46. C21H17orf85 C21H17orf85 1167 1.612 - 0.841 - - - 0.771 - - -
47. zgc:65772 zgc:65772 2092 1.609 - - - - 0.842 - - - 0.767
48. rprd1b ENSDARG00000038113 1105 1.607 - - - - 0.839 - 0.768 - - regulation of nuclear pre-mRNA domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-030131-355]
49. eif3ja ENSDARG00000012603 6324 1.603 - 0.728 - - 0.875 - - - - eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
50. tfap4 ENSDARG00000103923 2203 1.598 - - - - 0.883 - - - 0.715 transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
51. pak2b ENSDARG00000018476 4331 1.594 - 0.772 - - 0.822 - - - - p21 protein (Cdc42/Rac)-activated kinase 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3759]
52. knop1 ENSDARG00000077721 2198 1.591 - 0.777 - - 0.814 - - - - lysine-rich nucleolar protein 1 [Source:ZFIN;Acc:ZDB-GENE-090313-76]
53. ZNF337_25 ZNF337_25 1713 1.588 - - - - 0.846 - 0.742 - -
54. ppig ENSDARG00000044431 3427 1.587 - - - - 0.796 - 0.791 - - peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
55. zgc:110540 ENSDARG00000054929 2154 1.587 - 0.808 - - - - 0.779 - - zgc:110540 [Source:ZFIN;Acc:ZDB-GENE-050327-77]
56. dram2b ENSDARG00000044241 503 1.586 - - - - - 0.800 0.786 - - DNA-damage regulated autophagy modulator 2b [Source:ZFIN;Acc:ZDB-GENE-040625-141]
57. mtss1l mtss1l 2494 1.584 - - - - 0.868 - 0.716 - -
58. btg3 ENSDARG00000069065, ENSDARG00000115730 1632 1.578 - - - - 0.841 - 0.737 - - B-cell translocation gene 3 [Source:ZFIN;Acc:ZDB-GENE-031113-19]
59. sdhaf2 ENSDARG00000062971, ENSDARG00000114840 1320 1.575 - 0.835 - - - - 0.740 - - succinate dehydrogenase complex assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7564]
60. C8H5orf51 C8H5orf51 1199 1.573 - - - - 0.786 - 0.787 - -
61. CASKIN2_1 CASKIN2_1 2299 1.569 - 0.824 - - - - - - 0.745
62. ash2l ENSDARG00000060392 4916 1.567 - - - - - - 0.799 - 0.768 ash2 like, histone lysine methyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-494]
63. CDIP1 ENSDARG00000076118 1294 1.567 - 0.704 - - - - - 0.863 - cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]
64. ddx27 ENSDARG00000091831 1471 1.566 0.704 - - - 0.862 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Source:ZFIN;Acc:ZDB-GENE-031001-8]
65. cnbpb ENSDARG00000070922 14606 1.563 0.732 - - - - - - 0.831 - CCHC-type zinc finger, nucleic acid binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-7782]
66. FP236812.4 FP236812.4 1244 1.563 - - - 0.736 0.827 - - - -
67. krcp ENSDARG00000040224 5961 1.56 - 0.707 - - - - - - 0.853 kelch repeat-containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-2126]
68. DTX2 ENSDARG00000032933, ENSDARG00000109243 909 1.556 - 0.775 - - - - 0.781 - - deltex 2, E3 ubiquitin ligase [Source:ZFIN;Acc:ZDB-GENE-081022-150]
69. smc1al ENSDARG00000058203 8838 1.554 - - - - - - 0.845 - 0.709 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
70. arid2 ENSDARG00000007413 4413 1.554 - 0.720 - - 0.834 - - - - AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
71. srsf9 ENSDARG00000008097 2405 1.553 - - - - 0.754 - - - 0.799 serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
72. strada ENSDARG00000037929 1614 1.552 - - - - 0.779 - 0.773 - - ste20-related kinase adaptor alpha [Source:ZFIN;Acc:ZDB-GENE-030131-6482]
73. CCNA2 ENSDARG00000011094 3996 1.551 - 0.788 - - - - - - 0.763 cyclin A2 [Source:ZFIN;Acc:ZDB-GENE-020418-1]
74. rae1 ENSDARG00000007196, ENSDARG00000113905 3321 1.551 - - - - 0.830 - - - 0.721 ribonucleic acid export 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1029]
75. LPHN2 LPHN2 1971 1.546 - - - - 0.823 - 0.723 - -
76. SMAD4 SMAD4 3233 1.542 - - - - - 0.721 - - 0.821
77. cacng1 cacng1 3118 1.542 0.704 - - - - - - 0.838 -
78. ttc9c ENSDARG00000007025 463 1.542 - - - - 0.832 0.710 - - - tetratricopeptide repeat domain 9C [Source:ZFIN;Acc:ZDB-GENE-040426-1053]
79. CU570791.5 CU570791.5 872 1.539 - 0.786 - - - - 0.753 - -
80. tbl3 ENSDARG00000052344 1530 1.537 0.746 0.791 - - - - - - - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
81. zcchc8 ENSDARG00000034982 3406 1.537 - 0.705 - - 0.832 - - - - zinc finger, CCHC domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060526-6]
82. paf1 ENSDARG00000098432 1806 1.536 - - - - 0.822 - - - 0.714 PAF1 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-050506-101]
83. prmt1 ENSDARG00000010246 11311 1.535 - 0.801 - - - - 0.734 - - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
84. hmg20b ENSDARG00000042045, ENSDARG00000116536 2638 1.534 - 0.714 - - 0.820 - - - - high mobility group 20B [Source:ZFIN;Acc:ZDB-GENE-030131-4258]
85. cuedc1b ENSDARG00000054748 1638 1.533 - - - - - - 0.820 - 0.713 CUE domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-070424-29]
86. ankzf1 ENSDARG00000041904 917 1.532 - 0.781 - - - - 0.751 - - ankyrin repeat and zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050309-80]
87. nup93 ENSDARG00000003487, ENSDARG00000111433 2474 1.531 - - - - 0.772 0.759 - - - nucleoporin 93 [Source:ZFIN;Acc:ZDB-GENE-990415-46]
88. eftud2 ENSDARG00000012261 3081 1.531 - - - - 0.774 0.757 - - - elongation factor Tu GTP binding domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1569]
89. strn3 ENSDARG00000001729 4608 1.527 - - - - 0.783 - 0.744 - - striatin, calmodulin binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-405]
90. ppp4cb ENSDARG00000076439 1693 1.526 - - - - 0.779 - - - 0.747 protein phosphatase 4, catalytic subunit b [Source:ZFIN;Acc:ZDB-GENE-080219-32]
91. ccnf ENSDARG00000105046 1790 1.525 - - - - 0.779 - 0.746 - - cyclin F [Source:ZFIN;Acc:ZDB-GENE-021030-2]
92. fkbp2 ENSDARG00000044540 1615 1.524 - 0.776 - - - - - - 0.748 FK506 binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-126]
93. gsk3b ENSDARG00000017803 3438 1.523 - - - - 0.785 - - - 0.738 glycogen synthase kinase 3 beta [Source:ZFIN;Acc:ZDB-GENE-990714-4]
94. ube2nb ENSDARG00000045877 4583 1.518 - 0.756 - - 0.762 - - - - ubiquitin-conjugating enzyme E2Nb [Source:ZFIN;Acc:ZDB-GENE-040426-1291]
95. tomm5 ENSDARG00000068265 11813 1.518 0.700 - - - 0.818 - - - - translocase of outer mitochondrial membrane 5 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040724-90]
96. G3BP2_1 G3BP2_1 2390 1.517 - 0.721 - - - - - - 0.796
97. dpp9 ENSDARG00000052606 2279 1.515 0.745 - - - - 0.770 - - - dipeptidyl-peptidase 9 [Source:ZFIN;Acc:ZDB-GENE-061013-777]
98. ZNF609 ZNF609 2176 1.511 0.747 - - - - - - - 0.764
99. atxn2l ENSDARG00000011597, ENSDARG00000112336 2104 1.511 - - - - - - 0.731 - 0.780 ataxin 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-3246]
100. znf865 ENSDARG00000036698 15532 1.51 - 0.714 - - - - - - 0.796 zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]

There are 1575 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA