Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for rfx4

Gene Name Gene ID Reads Annotation
rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]










Genes with expression patterns similar to rfx4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
2. nova2 ENSDARG00000017673 7685 4.216 0.831 0.808 - - - 0.876 0.900 0.801 - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
3. slc18a3a ENSDARG00000006356 1285 4.145 0.720 0.815 - - 0.862 0.898 0.850 - - solute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
4. snap25a ENSDARG00000020609 4537 4.134 0.859 0.719 - - - 0.894 0.731 0.931 - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
5. eno2 ENSDARG00000014287 2162 3.656 0.877 - - - - 0.892 0.916 0.971 - enolase 2 [Source:ZFIN;Acc:ZDB-GENE-040704-27]
6. atp1b4 ENSDARG00000053262 1337 3.572 0.733 0.926 - - - 0.947 0.966 - - ATPase Na+/K+ transporting subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-070412-1]
7. slc1a3a ENSDARG00000104431 9888 3.55 0.899 0.738 - - - 0.955 0.958 - - solute carrier family 1 (glial high affinity glutamate transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2159]
8. pcdh1gc5 ENSDARG00000104826 10052 3.508 0.830 0.857 - - - 0.953 0.868 - - protocadherin 1 gamma c 5 [Source:ZFIN;Acc:ZDB-GENE-041118-16]
9. nrn1a ENSDARG00000071860 1311 3.493 0.757 - - - 0.908 0.932 0.896 - - neuritin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-212]
10. her15.2 her15.2 1701 3.484 - 0.916 - - 0.794 0.858 0.916 - -
11. myt1b ENSDARG00000102879 5411 3.473 0.766 0.879 - - - 0.937 0.891 - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
12. CU928222.1 ENSDARG00000097436 1662 3.466 0.723 0.946 - - - 0.867 0.930 - -
13. zic4 ENSDARG00000031307 1228 3.455 0.872 0.800 - - - 0.941 0.842 - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
14. sox2 ENSDARG00000070913 2763 3.433 0.820 0.880 - - - 0.822 0.911 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
15. atp2b3b ENSDARG00000023445 1424 3.428 0.769 0.907 - - - 0.884 0.868 - - ATPase plasma membrane Ca2+ transporting 3b [Source:ZFIN;Acc:ZDB-GENE-080409-2]
16. si:ch73-21g5.7 ENSDARG00000093156 9412 3.426 0.756 0.862 - - - 0.933 0.875 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
17. mapk12b ENSDARG00000006409 2246 3.424 0.803 0.872 - - - 0.899 0.850 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
18. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 3.409 - 0.919 - - 0.766 0.860 0.864 - - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
19. stmn2b ENSDARG00000070537 1586 3.4 0.914 0.806 - - - 0.942 0.738 - - stathmin 2b [Source:ZFIN;Acc:ZDB-GENE-050522-207]
20. nmnat2 ENSDARG00000004580 370 3.391 0.747 0.847 - - - 0.838 0.959 - - nicotinamide nucleotide adenylyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8201]
21. nes ENSDARG00000088805 2710 3.388 0.817 0.811 - - - 0.864 0.896 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
22. gap43 ENSDARG00000099744 4114 3.376 0.864 0.723 - - - 0.964 0.825 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
23. neurog1 ENSDARG00000056130 3924 3.366 0.829 0.892 - - - 0.778 0.867 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
24. DTX4 ENSDARG00000076302 2642 3.365 0.797 - - - 0.856 0.826 0.886 - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
25. BX957337.1 BX957337.1 1685 3.357 0.738 0.912 - - - 0.943 0.764 - -
26. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 3.349 0.711 0.829 - - - 0.902 0.907 - - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
27. cacna2d3 ENSDARG00000078760 211 3.348 0.836 0.787 - - - 0.897 0.828 - - calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
28. stmn2a ENSDARG00000033234 2272 3.333 0.841 0.827 - - - 0.934 0.731 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
29. nrarpb ENSDARG00000018958 6225 3.328 0.756 0.717 - - - 0.966 0.889 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
30. slc32a1 ENSDARG00000059775 1092 3.322 0.934 0.782 - - - 0.883 0.723 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
31. ptprnb ENSDARG00000077047 2743 3.319 0.811 0.930 - - - 0.752 0.826 - - protein tyrosine phosphatase, receptor type, Nb [Source:ZFIN;Acc:ZDB-GENE-100505-1]
32. dpysl3 ENSDARG00000002587 4381 3.3 0.870 - - - - 0.860 0.782 0.788 - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
33. nadl1.1 1200 3.293 0.733 0.832 - - - 0.910 0.818 - - neural adhesion molecule L1.1, transcript variant X1
34. pcsk1nl ENSDARG00000076170 1232 3.286 0.775 0.787 - - - 0.930 0.794 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
35. dpysl5a ENSDARG00000011141 1827 3.262 0.783 0.774 - - - 0.933 0.772 - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
36. add2 ENSDARG00000074581 1402 3.246 0.763 0.703 - - - 0.895 0.885 - - adducin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-080718-4]
37. scn8aa ENSDARG00000005775 792 3.243 0.815 0.742 - - - 0.908 0.778 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
38. MAP1A MAP1A 847 3.219 0.823 0.755 - - - 0.928 0.713 - -
39. stx1b ENSDARG00000000503 2724 3.204 0.874 0.706 - - - 0.873 0.751 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
40. SNAP91 ENSDARG00000098809 556 3.192 0.758 0.854 - - - 0.844 0.736 - - synaptosomal-associated protein 91 [Source:ZFIN;Acc:ZDB-GENE-100422-6]
41. klf7a ENSDARG00000073857 1226 3.187 - 0.745 - - - 0.796 0.784 - 0.862 Kruppel-like factor 7a [Source:ZFIN;Acc:ZDB-GENE-050522-276]
42. tnika ENSDARG00000056218 728 3.182 0.733 0.737 - - - 0.843 0.869 - - TRAF2 and NCK interacting kinase a [Source:ZFIN;Acc:ZDB-GENE-030131-3767]
43. adam23a ENSDARG00000062323 580 3.163 0.711 0.807 - - - 0.796 0.849 - - ADAM metallopeptidase domain 23a [Source:ZFIN;Acc:ZDB-GENE-070810-2]
44. CHL1 CHL1 1553 3.157 0.722 0.777 - - - 0.823 0.835 - -
45. nell2b ENSDARG00000062797 854 3.087 0.741 0.744 - - - 0.822 0.780 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
46. pknox2 ENSDARG00000055349 784 3.075 0.714 0.739 - - - - 0.877 0.745 - pbx/knotted 1 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-031118-112]
47. upf3a ENSDARG00000069297, ENSDARG00000111067 196 2.977 0.706 0.714 - - - 0.781 0.776 - - UPF3A, regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-060721-2]
48. dbx2 2971 2.956 0.735 0.755 - - - 0.702 0.764 - - developing brain homeobox 2
49. zic1 ENSDARG00000015567 2520 2.771 0.912 - - - - 0.888 0.971 - - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
50. tmtc2 tmtc2 798 2.759 - - - - 0.923 0.908 0.928 - -
51. ncana 1537 2.758 - - - - - 0.949 0.966 - 0.843 neurocan a
52. st18 663 2.754 - 0.931 - - - 0.922 0.901 - - suppression of tumorigenicity 18, zinc finger
53. sox21b ENSDARG00000008540 1460 2.737 0.898 0.961 - - - - 0.878 - - SRY (sex determining region Y)-box 21b [Source:ZFIN;Acc:ZDB-GENE-040429-1]
54. fhdc1 ENSDARG00000074812 934 2.716 0.892 - - - 0.930 - 0.894 - - FH2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040826-4]
55. lmo3 ENSDARG00000008720, ENSDARG00000114518 4773 2.705 - 0.819 - - - 0.929 0.957 - - LIM domain only 3 [Source:ZFIN;Acc:ZDB-GENE-050522-201]
56. vim ENSDARG00000010008 3551 2.702 0.779 - - - - 0.945 0.978 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
57. nadl1.2 695 2.701 0.958 - - - - 0.852 0.891 - - neural adhesion molecule L1.2, transcript variant X1
58. syt11a ENSDARG00000057913 1145 2.669 0.839 - - - - 0.959 0.871 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
59. spock2 ENSDARG00000075393 791 2.668 0.888 - - - - 0.941 0.839 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:ZFIN;Acc:ZDB-GENE-090312-170]
60. st8sia2 ENSDARG00000018788 2183 2.665 - - - - 0.876 0.959 0.830 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-020919-4]
61. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 2.661 - 0.928 - - - 0.869 0.864 - - hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
62. adcyap1b ENSDARG00000027740 1539 2.658 0.831 - - - - 0.921 0.906 - - adenylate cyclase activating polypeptide 1b [Source:ZFIN;Acc:ZDB-GENE-041010-89]
63. CDK5R1 CDK5R1 562 2.649 0.812 - - - - 0.859 0.978 - -
64. mllt11 ENSDARG00000071026 2518 2.645 0.877 - - - - 0.914 0.854 - - MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
65. plp1a ENSDARG00000103732 3544 2.635 0.848 - - - - 0.921 0.866 - - proteolipid protein 1a [Source:ZFIN;Acc:ZDB-GENE-001202-1]
66. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 2.628 0.807 - - - - 0.957 0.864 - - ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
67. isl1 ENSDARG00000004023 981 2.617 0.772 - - - - 0.915 0.930 - - ISL LIM homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-112]
68. mnx2a ENSDARG00000042106 939 2.617 - 0.919 - - - 0.749 0.949 - - motor neuron and pancreas homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-040415-1]
69. JPH3 ENSDARG00000102204 283 2.61 0.751 - - - 0.938 0.921 - - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
70. celf3a ENSDARG00000034668 2432 2.61 - - - - 0.843 0.947 0.820 - - cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
71. gad2 ENSDARG00000015537 724 2.61 - - - - 0.917 0.853 0.840 - - glutamate decarboxylase 2 [Source:ZFIN;Acc:ZDB-GENE-030909-9]
72. sypa ENSDARG00000042974, ENSDARG00000110528 3217 2.608 0.870 - - - - 0.933 0.805 - - synaptophysin a [Source:ZFIN;Acc:ZDB-GENE-031104-2]
73. CLIP3 ENSDARG00000054456 734 2.598 - 0.915 - - - 0.821 0.862 - - CAP-GLY domain containing linker protein 3 [Source:ZFIN;Acc:ZDB-GENE-131127-193]
74. atp6v0cb ENSDARG00000036577 3472 2.597 0.795 - - - - 0.938 0.864 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
75. hoxb8b ENSDARG00000054025, ENSDARG00000111056 2106 2.596 - - - - - 0.921 0.768 0.907 - homeobox B8b [Source:ZFIN;Acc:ZDB-GENE-980526-291]
76. tuba1c ENSDARG00000055216 8384 2.595 0.868 - - - - 0.932 0.795 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
77. ADAMTS3 ENSDARG00000060127 2839 2.594 - 0.939 - - - 0.762 0.893 - - ADAM metallopeptidase with thrombospondin type 1 motif, 3 [Source:ZFIN;Acc:ZDB-GENE-110223-1]
78. hmp19 2554 2.583 0.717 - - - - 0.982 0.884 - - HMP19 protein
79. stmn1b ENSDARG00000033655 9491 2.575 0.831 - - - - 0.891 0.853 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
80. dla ENSDARG00000010791 9281 2.574 0.797 0.892 - - - - 0.885 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
81. mir10d-1 mir10d-1 860 2.566 - 0.843 - - - 0.977 0.746 - -
82. irx1b ENSDARG00000056594 2224 2.559 0.851 - - - - 0.806 0.902 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
83. atp2b3a ENSDARG00000043474, ENSDARG00000112865 914 2.555 0.938 - - - - 0.835 0.782 - - ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]
84. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 2.553 0.777 0.893 - - - - 0.883 - - glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
85. si:ch211-278j3.3 ENSDARG00000020284 478 2.552 - - - - 0.936 0.904 0.712 - - si:ch211-278j3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-147]
86. MAP6 MAP6 643 2.551 0.882 - - - - 0.850 0.819 - -
87. prrt1 ENSDARG00000062208 368 2.55 0.839 - - - - 0.840 0.871 - - proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
88. Sep-03 Sep-03 1124 2.548 0.835 - - - - 0.917 0.796 - -
89. her2 ENSDARG00000038205 3219 2.547 0.884 - - - 0.795 - 0.868 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
90. ROBO3_1 ROBO3_1 468 2.547 - 0.832 - - - 0.931 0.784 - -
91. vgf ENSDARG00000105529 247 2.545 0.717 - - - - 0.917 0.911 - - VGF nerve growth factor inducible [Source:ZFIN;Acc:ZDB-GENE-121009-2]
92. lfng ENSDARG00000037879 11783 2.544 0.799 - - - - 0.909 - 0.836 - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
93. gfap ENSDARG00000025301 5584 2.541 0.798 - - - - 0.934 0.809 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
94. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.541 0.827 - - - - 0.867 0.847 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
95. epha4b ENSDARG00000011600 3110 2.54 0.872 - - - - 0.873 0.795 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
96. ZFHX3 ENSDARG00000103057 7759 2.539 0.779 - - - - 0.942 0.818 - - zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
97. aplp1 ENSDARG00000098368 2317 2.538 0.831 0.779 - - - 0.928 - - - amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
98. her8a ENSDARG00000016363 996 2.537 0.763 - - - 0.902 0.872 - - - hairy-related 8a [Source:ZFIN;Acc:ZDB-GENE-030131-2376]
99. ptprna ENSDARG00000058646 1327 2.537 - 0.777 - - - 0.848 0.912 - - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
100. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.534 0.946 - - - - 0.790 0.798 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]

There are 2564 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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