Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for her3

Gene Name Gene ID Reads Annotation
her3 ENSDARG00000076857 131 hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]










Genes with expression patterns similar to her3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. her3 ENSDARG00000076857 131 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
2. nrxn2a ENSDARG00000061454 291 3.464 0.782 0.881 - - - 0.955 0.846 - - neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
3. sez6l2 ENSDARG00000076052 360 3.424 0.932 0.907 - - - 0.824 0.761 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
4. amph ENSDARG00000007663 599 3.367 0.774 0.909 - - - 0.820 0.864 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
5. MAP1A MAP1A 847 3.198 0.743 0.811 - - - 0.762 0.882 - -
6. lingo1a ENSDARG00000034165 179 2.943 - 1.000 - - - 0.979 0.964 - - leucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]
7. SGIP1 SGIP1 236 2.807 0.965 - - - - 0.868 0.974 - -
8. entpd3 ENSDARG00000035309 263 2.807 - 0.895 - - - 0.912 1.000 - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
9. lhx1a ENSDARG00000014018 958 2.751 0.958 0.903 - - - - 0.890 - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
10. MAP6 MAP6 643 2.726 0.945 0.927 - - - 0.854 - - -
11. nkx1.2lb ENSDARG00000099427 220 2.72 - 0.881 - - - 0.886 0.953 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
12. slc17a6a ENSDARG00000001127 337 2.716 0.836 1.000 - - - - 0.880 - - solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
13. tmem91 ENSDARG00000068456 81 2.703 - 1.000 - - - 0.859 0.844 - - transmembrane protein 91 [Source:ZFIN;Acc:ZDB-GENE-060503-581]
14. KCNS3 KCNS3 82 2.689 - 1.000 - - - 0.934 0.755 - -
15. yjefn3 ENSDARG00000061692 211 2.681 0.971 1.000 - - - 0.710 - - - YjeF N-terminal domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050208-755]
16. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 2.671 0.907 - - - - 0.797 0.967 - - doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
17. CNTNAP1 ENSDARG00000074524 73 2.663 0.762 - - - - 0.926 0.975 - - contactin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030916-2]
18. SV2B SV2B 208 2.656 - 0.909 - - - 0.865 0.882 - -
19. slc17a6b ENSDARG00000041150 823 2.615 - 1.000 - - - 0.834 0.781 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
20. scrt2 ENSDARG00000056175 4331 2.597 - 0.895 - - - 0.792 0.910 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
21. bsk146 ENSDARG00000099069 274 2.592 0.961 - - - - 0.858 0.773 - - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
22. pnoca ENSDARG00000025024 467 2.555 0.743 - - - - 0.846 0.966 - - prepronociceptin a [Source:ZFIN;Acc:ZDB-GENE-101229-1]
23. nrsn1 ENSDARG00000111235 123 2.548 0.734 0.913 - - - 0.901 - - - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
24. si:dkey-245p14.4 ENSDARG00000070320 418 2.514 0.753 0.825 - - - 0.936 - - - si:dkey-245p14.4 [Source:ZFIN;Acc:ZDB-GENE-061207-63]
25. syt4 ENSDARG00000036505 421 2.511 0.741 0.815 - - - - 0.955 - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
26. rbfox3 rbfox3 1443 2.505 0.823 0.833 - - - - 0.849 - -
27. prph ENSDARG00000028306 242 2.492 0.898 0.734 - - - 0.860 - - - peripherin [Source:ZFIN;Acc:ZDB-GENE-990415-207]
28. cacng8b ENSDARG00000070626 176 2.482 0.833 - - - - 0.773 0.876 - - calcium channel, voltage-dependent, gamma subunit 8b [Source:ZFIN;Acc:ZDB-GENE-100921-72]
29. ppp2r2ba 321 2.465 0.744 - - - - 0.935 0.786 - - protein phosphatase 2, regulatory subunit B, beta a, transcript variant X2
30. si:ch211-152f6.6 si:ch211-152f6.6 278 2.448 0.703 0.946 - - - - 0.799 - -
31. RPH3A RPH3A 309 2.433 0.741 - - - - 0.807 0.885 - -
32. TUSC5 TUSC5 1436 2.43 - 0.701 - - - 0.818 0.911 - -
33. npffr1l2 ENSDARG00000062631 127 2.423 - 0.797 - - - 0.829 0.797 - - neuropeptide FF receptor 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-060526-110]
34. mapk12b ENSDARG00000006409 2246 2.408 0.746 - - - - 0.919 0.743 - - mitogen-activated protein kinase 12b [Source:ZFIN;Acc:ZDB-GENE-041210-123]
35. snap25a ENSDARG00000020609 4537 2.405 0.789 0.811 - - - - 0.805 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
36. prdm12b ENSDARG00000007430 914 2.395 0.713 - - - - 0.804 0.878 - - PR domain containing 12b [Source:ZFIN;Acc:ZDB-GENE-041114-172]
37. stmn2a ENSDARG00000033234 2272 2.394 - 0.702 - - - 0.861 0.831 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
38. dpysl4 ENSDARG00000103490 534 2.383 - - - 0.712 - 0.912 0.759 - - dihydropyrimidinase-like 4 [Source:ZFIN;Acc:ZDB-GENE-050720-3]
39. slc1a2b ENSDARG00000102453 3136 2.371 0.714 0.829 - - - - 0.828 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
40. spock3 ENSDARG00000070266, ENSDARG00000110158 934 2.359 0.801 - - - - 0.783 0.775 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 [Source:ZFIN;Acc:ZDB-GENE-090311-24]
41. hpca ENSDARG00000018397, ENSDARG00000110115 3866 2.358 - 0.777 - - - 0.877 0.704 - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
42. stmn1b ENSDARG00000033655 9491 2.354 0.748 - - - - 0.883 0.723 - - stathmin 1b [Source:ZFIN;Acc:ZDB-GENE-050417-397]
43. atp6v1b2 ENSDARG00000043465, ENSDARG00000113422 682 2.35 0.721 - - - - 0.733 0.896 - - ATPase H+ transporting V1 subunit B2 [Source:ZFIN;Acc:ZDB-GENE-030711-4]
44. kif3cb ENSDARG00000079500 935 2.336 0.754 - - 0.715 - 0.867 - - - kinesin family member 3Cb [Source:ZFIN;Acc:ZDB-GENE-080709-4]
45. jagn1a ENSDARG00000041071, ENSDARG00000109427 397 2.327 - 0.763 - - - 0.855 0.709 - - jagunal homolog 1a [Source:ZFIN;Acc:ZDB-GENE-041010-80]
46. nrxn1a ENSDARG00000061647, ENSDARG00000111866 1069 2.327 - 0.815 - - - 0.789 0.723 - - neurexin 1a [Source:ZFIN;Acc:ZDB-GENE-070206-1]
47. hs3st3l ENSDARG00000059903 184 2.32 0.761 0.745 - - - 0.814 - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [Source:ZFIN;Acc:ZDB-GENE-070202-6]
48. olfm1b ENSDARG00000014053 1392 2.315 0.789 - - - - 0.702 0.824 - - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
49. trim2b ENSDARG00000076174 250 2.29 0.705 - - - - 0.856 0.729 - - tripartite motif containing 2b [Source:ZFIN;Acc:ZDB-GENE-090312-70]
50. irx5b ENSDARG00000074070 459 2.267 0.765 - - - - 0.779 0.723 - - iroquois homeobox 5b [Source:ZFIN;Acc:ZDB-GENE-040628-5]
51. pcsk1nl ENSDARG00000076170 1232 2.263 - 0.745 - - - 0.808 0.710 - - proprotein convertase subtilisin/kexin type 1 inhibitor, like [Source:ZFIN;Acc:ZDB-GENE-090427-2]
52. gap43 ENSDARG00000099744 4114 2.215 0.753 - - - - 0.738 0.724 - - growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
53. atp6v0cb ENSDARG00000036577 3472 2.149 0.718 - - - - 0.709 0.722 - - ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
54. C10H5orf63 C10H5orf63 17 2 - 1.000 - - - - 1.000 - -
55. rbfox3l rbfox3l 34 2 - 1.000 - - - - 1.000 - -
56. CABZ01066439.2 CABZ01066439.2 5 2 - 1.000 - - - - 1.000 - -
57. tecrl2 tecrl2 11 2 - 1.000 - - - - 1.000 - -
58. fam163b ENSDARG00000073914 46 2 - 1.000 - - - - 1.000 - - family with sequence similarity 163, member B [Source:ZFIN;Acc:ZDB-GENE-091204-96]
59. nebl ENSDARG00000021200 40 2 - 1.000 - - - - 1.000 - - nebulette [Source:ZFIN;Acc:ZDB-GENE-050320-151]
60. arl11l arl11l 31 2 - 1.000 - - - - 1.000 - -
61. si:dkey-122c11.4 si:dkey-122c11.4 13 2 - 1.000 - - - - 1.000 - -
62. CABZ01084273.1 CABZ01084273.1 16 2 - 1.000 - - - - 1.000 - -
63. prdm14 ENSDARG00000045371 106 2 - 1.000 - - - - 1.000 - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
64. CLDN20 26 1.952 - 1.000 - - - 0.952 - - - claudin 20, transcript variant X2
65. rims3 ENSDARG00000062305 202 1.947 0.947 1.000 - - - - - - - regulating synaptic membrane exocytosis 3 [Source:ZFIN;Acc:ZDB-GENE-060503-788]
66. CT025910.1 CT025910.1 143 1.945 - 1.000 - - - 0.945 - - -
67. PLCXD1_3 PLCXD1_3 35 1.943 - 1.000 - - - 0.943 - - -
68. htr3a ENSDARG00000089212 51 1.942 - 1.000 - - - 0.942 - - - 5-hydroxytryptamine (serotonin) receptor 3A [Source:ZFIN;Acc:ZDB-GENE-071012-5]
69. TRPC4_1 TRPC4_1 212 1.924 - 1.000 - - - 0.924 - - -
70. SSBP2 ENSDARG00000099727 22 1.922 - - - - - 0.922 1.000 - - single-stranded DNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-090312-197]
71. CAMK1 CAMK1 28 1.915 - - - - - 0.915 1.000 - -
72. xkr6 xkr6 286 1.914 - - - - - 0.935 0.979 - -
73. neto1 ENSDARG00000068483 13 1.905 - - - - - 0.905 1.000 - - neuropilin (NRP) and tolloid (TLL)-like 1 [Source:ZFIN;Acc:ZDB-GENE-070912-592]
74. grik4 ENSDARG00000026753 22 1.904 - - - - - 0.904 1.000 - - glutamate receptor, ionotropic, kainate 4 [Source:ZFIN;Acc:ZDB-GENE-070821-5]
75. zgc:113274 ENSDARG00000059235, ENSDARG00000116981 19 1.903 - 1.000 - - - 0.903 - - - zgc:113274 [Source:ZFIN;Acc:ZDB-GENE-050508-2]
76. dtnbp1b ENSDARG00000055206 64 1.903 0.950 - - - - - 0.953 - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
77. fgf18b ENSDARG00000043962, ENSDARG00000112937 29 1.9 - - - - - 0.900 1.000 - - fibroblast growth factor 18b [Source:ZFIN;Acc:ZDB-GENE-050221-4]
78. TUBB2A TUBB2A 142 1.9 - 1.000 - - - 0.900 - - -
79. zgc:153845 62 1.894 - - - - - 0.894 1.000 - - zgc:153845
80. CR391967.1 CR391967.1 135 1.888 0.888 1.000 - - - - - - -
81. penka ENSDARG00000004869 161 1.883 - 0.991 - - - - 0.892 - - proenkephalin a [Source:ZFIN;Acc:ZDB-GENE-030729-31]
82. htr2cl1 ENSDARG00000018228, ENSDARG00000113913 131 1.883 - 1.000 - - - 0.883 - - - 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1 [Source:ZFIN;Acc:ZDB-GENE-081104-48]
83. st8sia1_1 ENSDARG00000098221 16 1.882 - 1.000 - - - - 0.882 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-051005-1]
84. NPPC_1 NPPC_1 11 1.881 - 0.881 - - - - 1.000 - -
85. kcnip1b ENSDARG00000034808, ENSDARG00000111766 136 1.858 - 1.000 - - - 0.858 - - - Kv channel interacting protein 1 b [Source:ZFIN;Acc:ZDB-GENE-041212-57]
86. FP102801.1_1 FP102801.1_1 238 1.849 - - - - - 0.957 0.892 - -
87. atcaya ENSDARG00000071678 344 1.844 - - - - - 0.931 0.913 - - ataxia, cerebellar, Cayman type a [Source:ZFIN;Acc:ZDB-GENE-070705-185]
88. ENSDARG00000086878 ENSDARG00000086878 332 1.843 - 0.898 - - - 0.945 - - -
89. atxn1b ENSDARG00000060862 345 1.84 - 1.000 - - - 0.840 - - - ataxin 1b [Source:ZFIN;Acc:ZDB-GENE-061218-2]
90. skor1b ENSDARG00000062448, ENSDARG00000112341 282 1.839 0.913 - - - - - 0.926 - - SKI family transcriptional corepressor 1b [Source:ZFIN;Acc:ZDB-GENE-050419-82]
91. zgc:113307 ENSDARG00000044894 17 1.837 - 1.000 - - - 0.837 - - - zgc:113307 [Source:ZFIN;Acc:ZDB-GENE-050522-29]
92. gbx1 ENSDARG00000071418 871 1.836 - 0.909 - - - - 0.927 - - gastrulation brain homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-020117-2]
93. ksr2 ENSDARG00000094526 134 1.833 - 0.901 - - - 0.932 - - - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
94. CDH8 172 1.827 - 1.000 - - - 0.827 - - - cadherin 8
95. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 1.826 0.871 - - - - - 0.955 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
96. SLC35F4 ENSDARG00000103124 55 1.82 0.947 - - - - - 0.873 - - solute carrier family 35, member F4 [Source:ZFIN;Acc:ZDB-GENE-131121-49]
97. thsd7ba ENSDARG00000095022 231 1.815 - - - - - 0.916 0.899 - - thrombospondin, type I, domain containing 7Ba [Source:ZFIN;Acc:ZDB-GENE-070621-2]
98. otpa ENSDARG00000014201 2290 1.815 - - - - - 0.847 0.968 - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
99. C19H7orf41 C19H7orf41 2243 1.815 - - - - - 0.957 0.858 - -
100. trim46b ENSDARG00000058649 54 1.814 - 1.000 - - - - 0.814 - - tripartite motif containing 46b [Source:ZFIN;Acc:ZDB-GENE-060503-466]

There are 2367 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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