Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for lhx1a

Gene Name Gene ID Reads Annotation
lhx1a ENSDARG00000014018 958 LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]










Genes with expression patterns similar to lhx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. lhx1a ENSDARG00000014018 958 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
2. cadm3 ENSDARG00000057013 1545 4.293 0.760 0.877 - - - 0.885 0.981 - 0.790 cell adhesion molecule 3 [Source:ZFIN;Acc:ZDB-GENE-060512-196]
3. stx1b ENSDARG00000000503 2724 4.211 0.790 0.814 - 0.716 - 0.933 0.958 - - syntaxin 1B [Source:ZFIN;Acc:ZDB-GENE-000330-4]
4. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 4.12 0.705 - 0.748 - - 0.909 0.948 - 0.810 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
5. slc35g2b ENSDARG00000045447 378 4.101 0.724 0.857 - 0.754 - 0.919 0.847 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
6. nadl1.1 1200 4.005 0.763 0.770 - - - 0.840 0.904 - 0.728 neural adhesion molecule L1.1, transcript variant X1
7. nhlh2 ENSDARG00000025495 1860 3.978 0.833 0.737 - - - 0.847 0.839 - 0.722 nescient helix loop helix 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1809]
8. CHL1 CHL1 1553 3.824 0.708 0.737 - 0.766 - 0.808 0.805 - -
9. C8H1orf106 C8H1orf106 2690 3.762 0.710 0.765 - - - 0.808 0.755 - 0.724
10. amph ENSDARG00000007663 599 3.619 0.889 0.939 - - - 0.856 0.935 - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
11. syt4 ENSDARG00000036505 421 3.617 0.877 0.895 - - - 0.899 0.946 - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
12. snap25a ENSDARG00000020609 4537 3.614 0.899 0.853 - - - 0.917 0.945 - - synaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
13. sez6l2 ENSDARG00000076052 360 3.612 0.906 1.000 - - - 0.791 0.915 - - seizure related 6 homolog (mouse)-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-189]
14. MAP1A MAP1A 847 3.603 0.833 0.952 - - - 0.845 0.973 - -
15. slc1a2b ENSDARG00000102453 3136 3.578 0.836 0.911 - - - 0.924 0.907 - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
16. olfm1b ENSDARG00000014053 1392 3.574 0.872 - - - - 0.819 0.909 0.974 - olfactomedin 1b [Source:ZFIN;Acc:ZDB-GENE-040801-228]
17. tuba1c ENSDARG00000055216 8384 3.574 0.896 - - - - 0.887 0.953 - 0.838 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
18. STMN3 ENSDARG00000038465 1009 3.516 0.960 - - 0.831 - 0.791 0.934 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
19. scrt2 ENSDARG00000056175 4331 3.511 0.726 0.974 - - - 0.875 0.936 - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
20. rbfox3 rbfox3 1443 3.501 0.877 0.756 - - - 0.939 0.929 - -
21. syngr3a ENSDARG00000014871 405 3.498 0.941 0.830 - - - 0.902 0.825 - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
22. dpysl3 ENSDARG00000002587 4381 3.497 0.907 - - - - 0.911 0.939 - 0.740 dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
23. gng3 ENSDARG00000009553 2530 3.487 0.726 0.885 - - - 0.936 0.940 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
24. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 3.484 0.815 - 0.770 - - 0.955 0.944 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
25. dbx2 2971 3.475 0.737 0.931 - - - 0.859 0.948 - - developing brain homeobox 2
26. pou4f1 ENSDARG00000005559 821 3.474 0.788 - - 0.867 - 0.875 0.944 - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
27. SV2B SV2B 208 3.434 0.711 0.939 - - - 0.820 0.964 - -
28. elavl4 ENSDARG00000045639 998 3.43 - - 0.851 - - 0.865 0.964 - 0.750 ELAV like neuron-specific RNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-990415-246]
29. pax6a ENSDARG00000103379 3061 3.412 - 0.820 0.720 - - 0.925 0.947 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
30. slc17a6a ENSDARG00000001127 337 3.401 0.842 0.903 - - - - 0.883 - 0.773 solute carrier family 17 (vesicular glutamate transporter), member 6a [Source:ZFIN;Acc:ZDB-GENE-050105-4]
31. itm2ca ENSDARG00000043448 1265 3.398 - 0.738 - 0.779 - 0.948 0.933 - - integral membrane protein 2Ca [Source:ZFIN;Acc:ZDB-GENE-040718-284]
32. nova2 ENSDARG00000017673 7685 3.391 0.844 0.787 - - - 0.896 0.864 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
33. gpm6aa ENSDARG00000055455, ENSDARG00000110942 9156 3.384 0.850 0.845 - - - - 0.893 - 0.796 glycoprotein M6Aa [Source:ZFIN;Acc:ZDB-GENE-030710-7]
34. scn8aa ENSDARG00000005775 792 3.376 0.814 0.744 - - - 0.907 0.911 - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
35. nbeaa ENSDARG00000070080 862 3.375 0.841 - - - - 0.773 0.943 - 0.818 neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
36. calb1 ENSDARG00000031598 252 3.373 0.793 0.903 - - - 0.914 0.763 - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
37. nes ENSDARG00000088805 2710 3.363 0.862 0.910 - - - 0.758 0.833 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
38. ANO8 ANO8 380 3.357 0.905 - 0.737 - - - - 0.981 0.734
39. mb21d2a mb21d2a 421 3.348 0.810 0.748 - - - 0.823 0.967 - -
40. vamp2 ENSDARG00000056877 2158 3.348 0.842 - 0.707 - - 0.933 - - 0.866 vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
41. tox ENSDARG00000032317 9126 3.341 0.885 - - - - 0.749 0.875 - 0.832 thymocyte selection-associated high mobility group box [Source:ZFIN;Acc:ZDB-GENE-070912-181]
42. mllt11 ENSDARG00000071026 2518 3.333 0.882 - - - - 0.879 0.855 - 0.717 MLLT11, transcription factor 7 cofactor [Source:ZFIN;Acc:ZDB-GENE-030131-3007]
43. rap2ip rap2ip 681 3.328 - 1.000 - - - 0.785 0.823 - 0.720
44. nrxn2a ENSDARG00000061454 291 3.324 0.872 0.789 - - - - 0.926 - 0.737 neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
45. gap43 ENSDARG00000099744 4114 3.318 0.860 - - - - 0.813 0.881 - 0.764 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
46. celf4 ENSDARG00000070045 1537 3.312 0.851 - - 0.747 - 0.808 0.906 - - CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
47. stmn2a ENSDARG00000033234 2272 3.304 0.816 0.812 - - - 0.739 0.937 - - stathmin 2a [Source:ZFIN;Acc:ZDB-GENE-041010-85]
48. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 3.298 0.883 0.750 - - - 0.834 - - 0.831 POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
49. si:ch211-152f6.6 si:ch211-152f6.6 278 3.278 0.814 0.850 - - - 0.815 0.799 - -
50. tmem35 ENSDARG00000052567 5685 3.277 0.825 - - - - 0.754 0.850 - 0.848 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
51. negr1 ENSDARG00000021607 1051 3.272 0.821 - - - - 0.893 0.774 - 0.784 neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
52. hoxc4a ENSDARG00000070338 1382 3.264 0.761 - - - - 0.847 0.893 0.763 - homeobox C4a [Source:ZFIN;Acc:ZDB-GENE-990415-112]
53. fam57ba ENSDARG00000026875 504 3.255 0.864 - - 0.836 - 0.842 - - 0.713 family with sequence similarity 57, member Ba [Source:ZFIN;Acc:ZDB-GENE-030131-2046]
54. tmie ENSDARG00000069423 305 3.249 0.846 - - 0.820 - 0.727 0.856 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
55. TUSC5 TUSC5 1436 3.246 0.783 0.727 - - - 0.794 0.942 - -
56. nrarpb ENSDARG00000018958 6225 3.246 0.849 - - - - 0.773 0.882 - 0.742 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
57. slc17a6b ENSDARG00000041150 823 3.235 0.719 0.903 - - - 0.707 0.906 - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
58. ndrg4 ENSDARG00000103937 1234 3.22 0.732 - - - - 0.739 0.961 - 0.788 NDRG family member 4 [Source:ZFIN;Acc:ZDB-GENE-060512-226]
59. penka ENSDARG00000004869 161 3.215 0.743 0.952 - - - 0.718 0.802 - - proenkephalin a [Source:ZFIN;Acc:ZDB-GENE-030729-31]
60. sncb ENSDARG00000104945 8197 3.21 0.836 0.732 0.720 - - 0.922 - - - synuclein, beta [Source:ZFIN;Acc:ZDB-GENE-040426-1615]
61. fez1 ENSDARG00000023174 701 3.205 0.740 - - - - 0.824 0.861 - 0.780 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
62. syt11a ENSDARG00000057913 1145 3.204 0.815 0.837 - - - 0.705 0.847 - - synaptotagmin XIa [Source:ZFIN;Acc:ZDB-GENE-040426-2815]
63. jag1a ENSDARG00000030289 1275 3.195 0.743 0.728 - - - 0.832 0.892 - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
64. myt1b ENSDARG00000102879 5411 3.193 - - 0.783 - - 0.817 0.872 - 0.721 myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
65. Sep-03 Sep-03 1124 3.186 0.771 - - - - 0.864 0.816 - 0.735
66. insm1b ENSDARG00000053301 2032 3.178 - - 0.709 - - 0.820 - 0.852 0.797 insulinoma-associated 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2602]
67. inab ENSDARG00000053248 3239 3.161 0.801 - 0.706 - - 0.918 - - 0.736 internexin neuronal intermediate filament protein, alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-83]
68. neurog1 ENSDARG00000056130 3924 3.16 0.731 0.746 - - - 0.791 0.892 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
69. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 3.158 - 0.703 - - - 0.925 0.731 - 0.799 G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
70. CR848045.1 CR848045.1 459 3.154 0.734 0.765 - - - 0.722 0.933 - -
71. cacng3b ENSDARG00000076401 91 3.142 0.712 0.903 - - - 0.760 0.767 - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
72. snap25b ENSDARG00000058117 469 3.119 0.750 - - 0.727 - 0.793 0.849 - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
73. dla ENSDARG00000010791 9281 3.111 0.730 - - - - - 0.895 0.706 0.780 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
74. st18 663 3.085 - 0.745 - - - 0.748 0.823 - 0.769 suppression of tumorigenicity 18, zinc finger
75. rtn1b ENSDARG00000021143 1682 3.063 - 0.738 - - - 0.830 0.777 - 0.718 reticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
76. dync1i1 ENSDARG00000060948 554 3.028 - - 0.715 - - 0.813 0.784 - 0.716 dynein, cytoplasmic 1, intermediate chain 1 [Source:ZFIN;Acc:ZDB-GENE-061215-62]
77. hmgb3a ENSDARG00000056725 15668 3.005 0.750 - - - - 0.779 0.745 - 0.731 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
78. dtnbp1b ENSDARG00000055206 64 2.861 0.960 - - - - 0.938 0.963 - - dystrobrevin binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-060503-889]
79. scn8ab ENSDARG00000018032, ENSDARG00000112543 883 2.835 0.931 - - - - 0.926 0.978 - - sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
80. fsd1 ENSDARG00000062017 207 2.813 0.956 0.891 - - - - 0.966 - - fibronectin type III and SPRY domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-218]
81. scn2b ENSDARG00000101713 796 2.788 - 0.939 - - - 0.924 0.925 - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
82. nell2b ENSDARG00000062797 854 2.788 0.932 - - - - 0.904 0.952 - - neural EGFL like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8026]
83. dmrt3a ENSDARG00000035290, ENSDARG00000114587 115 2.755 0.921 - - - - 0.877 0.957 - - doublesex and mab-3 related transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-021220-3]
84. dbx1b ENSDARG00000001859, ENSDARG00000113468 810 2.754 0.893 - - - - 0.910 0.951 - - developing brain homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-000128-11]
85. her3 ENSDARG00000076857 131 2.751 0.958 0.903 - - - - 0.890 - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
86. prdm14 ENSDARG00000045371 106 2.748 - 0.903 - - - 0.955 0.890 - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
87. lrrc4.1 ENSDARG00000069402 323 2.741 0.847 - - - - 0.921 0.973 - - leucine rich repeat containing 4.1 [Source:ZFIN;Acc:ZDB-GENE-041210-129]
88. elovl4a ENSDARG00000006773 412 2.739 - - - - - - 0.920 0.983 0.836 ELOVL fatty acid elongase 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1767]
89. atp6v0a1b ENSDARG00000015174 1052 2.729 - - - - - 0.950 0.825 0.954 - ATPase H+ transporting V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
90. cadpsb ENSDARG00000070567 458 2.726 - - - - - 0.871 0.879 0.976 - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
91. MAP6 MAP6 643 2.719 0.987 0.830 - - - - 0.902 - -
92. SPOCK1 ENSDARG00000074644 794 2.684 0.826 - - - - 0.951 0.907 - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
93. slc32a1 ENSDARG00000059775 1092 2.681 0.859 - - - - 0.890 0.932 - - solute carrier family 32 (GABA vesicular transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-061201-1]
94. TUBB8P7_1 TUBB8P7_1 2722 2.681 0.838 - - - - 0.935 0.908 - -
95. SKOR2 SKOR2 1041 2.665 0.778 - - - - 0.942 0.945 - -
96. clstn3 ENSDARG00000073883 590 2.658 0.758 - - - - 0.964 0.936 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
97. GLRA3 ENSDARG00000011066 242 2.649 0.742 0.984 - - - - 0.923 - - glycine receptor, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-020402-1]
98. cdk5r1b ENSDARG00000045087 2075 2.647 0.760 - - - - 0.906 0.981 - - cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
99. fam219ab ENSDARG00000013813 591 2.646 - 0.903 - - - 0.893 0.850 - - family with sequence similarity 219, member Ab [Source:ZFIN;Acc:ZDB-GENE-050522-213]
100. lrrtm1 ENSDARG00000052713 1041 2.64 - - - - - 0.822 0.853 0.965 - leucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]

There are 2573 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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