Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for PBRM1

Gene Name Gene ID Reads Annotation
PBRM1 ENSDARG00000003877 225 polybromo 1 [Source:ZFIN;Acc:ZDB-GENE-080926-4]










Genes with expression patterns similar to PBRM1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. PBRM1 ENSDARG00000003877 225 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 polybromo 1 [Source:ZFIN;Acc:ZDB-GENE-080926-4]
2. si:ch211-117m20.4 ENSDARG00000094286 7 2.625 0.764 1.000 - - - - 0.861 - - si:ch211-117m20.4 [Source:ZFIN;Acc:ZDB-GENE-060526-20]
3. csnk1e ENSDARG00000045150, ENSDARG00000112948 288 2.592 0.784 - - - - - 0.863 0.945 - casein kinase 1, epsilon [Source:ZFIN;Acc:ZDB-GENE-030131-7873]
4. ZNF337_7 ZNF337_7 198 2.436 0.764 - - - - - 0.712 0.960 -
5. SPTBN4_1 ENSDARG00000092624 473 2.388 - - - - - - 0.875 0.806 0.707 spectrin beta, non-erythrocytic 4 [Source:HGNC Symbol;Acc:HGNC:14896]
6. zgc:100920 ENSDARG00000042961, ENSDARG00000112929 1384 2.265 - - - - - - 0.741 0.822 0.702 zgc:100920 [Source:ZFIN;Acc:ZDB-GENE-040801-156]
7. si:ch211-145h19.1 31 2 1.000 1.000 - - - - - - - si:ch211-145h19.1
8. nrxn3a ENSDARG00000043746 54 1.933 1.000 - - - - - 0.933 - - neurexin 3a [Source:ZFIN;Acc:ZDB-GENE-070206-9]
9. syt9a ENSDARG00000003994 298 1.887 - - - - - - 0.933 0.954 - synaptotagmin IXa [Source:ZFIN;Acc:ZDB-GENE-031002-18]
10. myt1a ENSDARG00000074030, ENSDARG00000116035 2839 1.87 - - - - - - 0.970 0.900 - myelin transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3885]
11. si:ch211-151h10.2 ENSDARG00000068250 14 1.861 - 1.000 - - - - 0.861 - - si:ch211-151h10.2 [Source:ZFIN;Acc:ZDB-GENE-050419-29]
12. si:ch211-253d24.2 si:ch211-253d24.2 12 1.861 - 1.000 - - - - 0.861 - -
13. robo2 ENSDARG00000014891, ENSDARG00000078366 23 1.861 1.000 - - - - - 0.861 - - roundabout, axon guidance receptor, homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-001019-1]
14. pax6b ENSDARG00000045936 349 1.859 0.916 - - - - - 0.943 - - paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
15. zc3h12b ENSDARG00000062463, ENSDARG00000113648 402 1.838 - - - - - - 0.864 0.974 - zinc finger CCCH-type containing 12B [Source:ZFIN;Acc:ZDB-GENE-060526-290]
16. nova1 ENSDARG00000020178 4129 1.835 - - - - - - 0.969 0.866 - neuro-oncological ventral antigen 1 [Source:ZFIN;Acc:ZDB-GENE-060526-113]
17. stap2a ENSDARG00000092810 591 1.832 - - - - - - 0.890 0.942 - signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
18. lrit2 ENSDARG00000030626 69 1.828 - - - - - - 0.861 0.967 - leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 [Source:ZFIN;Acc:ZDB-GENE-050522-160]
19. si:ch211-133l11.10 ENSDARG00000005626 381 1.823 0.940 - - - - - 0.883 - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
20. mgrn1a ENSDARG00000100072 263 1.819 - - - - - - 0.861 0.958 - mahogunin, ring finger 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6192]
21. PRKAR2B ENSDARG00000036446 812 1.806 - 0.829 - - - - 0.977 - - protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
22. fyna ENSDARG00000011370 1679 1.804 - - - - - - 0.900 0.904 - FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
23. nkx1.2lb ENSDARG00000099427 220 1.801 0.901 - - - - - 0.900 - - NK1 transcription factor related 2-like,b [Source:ZFIN;Acc:ZDB-GENE-040615-2]
24. sb:cb54 sb:cb54 475 1.797 - - - - - - 0.830 0.967 -
25. nrxn2a ENSDARG00000061454 291 1.796 - - - - - - 0.854 0.942 - neurexin 2a [Source:ZFIN;Acc:ZDB-GENE-070206-5]
26. pcp4a ENSDARG00000053130 1024 1.795 - - - - - - 0.983 0.812 - Purkinje cell protein 4a [Source:ZFIN;Acc:ZDB-GENE-031118-105]
27. ptprna ENSDARG00000058646 1327 1.793 - - - - - - 0.913 0.880 - protein tyrosine phosphatase, receptor type, Na [Source:ZFIN;Acc:ZDB-GENE-030131-3511]
28. scg2b ENSDARG00000038574 345 1.79 - - - - - - 0.862 0.928 - secretogranin II (chromogranin C), b [Source:ZFIN;Acc:ZDB-GENE-061103-160]
29. tapbp tapbp 70 1.788 1.000 0.788 - - - - - - -
30. CACFD1 ENSDARG00000090818 1298 1.786 - - - - - - 0.861 0.925 - calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
31. FAM171A2 FAM171A2 707 1.783 - - - - - - 0.925 0.858 -
32. CR942805.1 CR942805.1 94 1.779 - 0.815 - - - - - 0.964 -
33. syt5b ENSDARG00000011640 70 1.774 - 0.808 - - - - - 0.966 - synaptotagmin Vb [Source:ZFIN;Acc:ZDB-GENE-050522-134]
34. islr2 ENSDARG00000051875, ENSDARG00000109523 2288 1.769 0.860 - - - - - 0.909 - - immunoglobulin superfamily containing leucine-rich repeat 2 [Source:ZFIN;Acc:ZDB-GENE-050320-95]
35. si:ch73-44m9.1 ENSDARG00000077115 3 1.764 0.764 1.000 - - - - - - - si:ch73-44m9.1 [Source:ZFIN;Acc:ZDB-GENE-081104-289]
36. AL929453.1 ENSDARG00000115950 31 1.764 0.764 1.000 - - - - - - -
37. si:ch73-115f13.1 si:ch73-115f13.1 15 1.764 0.764 1.000 - - - - - - -
38. ttll7 ENSDARG00000062973 519 1.754 - - - - - - 0.808 0.946 - tubulin tyrosine ligase-like family, member 7 [Source:ZFIN;Acc:ZDB-GENE-070112-2112]
39. TUBB8P7_2 TUBB8P7_2 565 1.75 0.861 - - - - - 0.889 - -
40. CABZ01051991.1 CABZ01051991.1 346 1.734 0.890 - - - - - 0.844 - -
41. GRIK3 ENSDARG00000077715 178 1.733 0.764 - - - - - - 0.969 - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
42. si:dkey-169l5.3 si:dkey-169l5.3 239 1.733 0.834 - - - - - 0.899 - -
43. si:dkey-177p2.18 ENSDARG00000091633 91 1.728 0.728 1.000 - - - - - - - si:dkey-177p2.18 [Source:ZFIN;Acc:ZDB-GENE-130603-12]
44. scn2b ENSDARG00000101713 796 1.724 - - - - - - 0.882 0.842 - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
45. cldn5a ENSDARG00000043716 3865 1.722 - - - - - - 0.788 0.934 - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
46. pax6a ENSDARG00000103379 3061 1.722 0.740 - - - - - 0.982 - - paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
47. fez1 ENSDARG00000023174 701 1.718 - - - - - - 0.976 - 0.742 fasciculation and elongation protein zeta 1 (zygin I) [Source:ZFIN;Acc:ZDB-GENE-040426-2723]
48. celsr1b ENSDARG00000058259 1219 1.717 - - - - - - 0.742 0.975 - cadherin EGF LAG seven-pass G-type receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050823-4]
49. mir10d-1 mir10d-1 860 1.716 0.819 - - - - - 0.897 - -
50. dpysl5a ENSDARG00000011141 1827 1.712 - - - - - - 0.970 - 0.742 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
51. notch1b ENSDARG00000052094 7874 1.711 - - - - - - 0.911 0.800 - notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
52. dbx2 2971 1.711 0.770 - - - - - 0.941 - - developing brain homeobox 2
53. CHRNB4 ENSDARG00000101677 128 1.703 0.735 - - - - - 0.968 - - cholinergic receptor, nicotinic, beta 4 (neuronal) [Source:ZFIN;Acc:ZDB-GENE-120809-1]
54. asic2 ENSDARG00000006849 18 1.702 - 1.000 - - - - 0.702 - - acid-sensing (proton-gated) ion channel 2 [Source:ZFIN;Acc:ZDB-GENE-040513-4]
55. slc8a2b ENSDARG00000100592 598 1.695 0.738 - - - - - 0.957 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
56. xkr6 xkr6 286 1.694 0.764 - - - - - 0.930 - -
57. BX571949.1 BX571949.1 293 1.689 0.793 - - - - - 0.896 - -
58. mir124-2 196 1.689 0.750 - - - - - 0.939 - - microRNA 124-2
59. mpped2 ENSDARG00000034443, ENSDARG00000114674 527 1.682 - - - - - - 0.787 0.895 - metallophosphoesterase domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-030131-8903]
60. gsx1 ENSDARG00000035735 1243 1.682 - - - - - - 0.974 0.708 - GS homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-041008-135]
61. RPS6KL1 ENSDARG00000079024 22 1.68 0.952 - - - - - 0.728 - - ribosomal protein S6 kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-111020-10]
62. ogfr ENSDARG00000037837 1001 1.678 - - - - - - 0.702 0.976 - opioid growth factor receptor [Source:ZFIN;Acc:ZDB-GENE-030131-377]
63. inaa ENSDARG00000011862 115 1.671 - - - - - - 0.708 0.963 - internexin neuronal intermediate filament protein, alpha a [Source:ZFIN;Acc:ZDB-GENE-060531-65]
64. sox19a ENSDARG00000010770, ENSDARG00000110497 4683 1.67 0.723 - - - - - 0.947 - - SRY (sex determining region Y)-box 19a [Source:ZFIN;Acc:ZDB-GENE-980526-102]
65. celf3b ENSDARG00000006983 171 1.669 - - - - - 0.714 - 0.955 - cugbp, Elav-like family member 3b [Source:ZFIN;Acc:ZDB-GENE-110408-50]
66. zic1 ENSDARG00000015567 2520 1.666 - - - - - - 0.761 0.905 - zic family member 1 (odd-paired homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000208-4]
67. neurog1 ENSDARG00000056130 3924 1.664 0.732 - - - - - 0.932 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
68. dbx1a ENSDARG00000086393 3161 1.662 0.735 - - - - - 0.927 - - developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
69. hnrnpa3 ENSDARG00000059351 453 1.661 0.741 - - - - - 0.920 - - heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
70. kcnc3a ENSDARG00000055855 1821 1.66 0.729 - - - - - 0.931 - - potassium voltage-gated channel, Shaw-related subfamily, member 3a [Source:ZFIN;Acc:ZDB-GENE-100901-1]
71. ppp3ca ENSDARG00000004988 615 1.66 - - - - - - 0.884 0.776 - protein phosphatase 3, catalytic subunit, alpha isozyme [Source:ZFIN;Acc:ZDB-GENE-091113-24]
72. tuba2 ENSDARG00000045014 1490 1.657 - - - - - - 0.900 - 0.757 tubulin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1970]
73. nadl1.1 1200 1.654 0.798 - - - - - 0.856 - - neural adhesion molecule L1.1, transcript variant X1
74. gap43 ENSDARG00000099744 4114 1.653 - - - - - - 0.907 - 0.746 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
75. BTBD17 BTBD17 53 1.653 0.792 - - - - - 0.861 - -
76. neurod4 ENSDARG00000003469, ENSDARG00000117149 1732 1.653 - - - - - - 0.829 0.824 - neuronal differentiation 4 [Source:ZFIN;Acc:ZDB-GENE-030730-1]
77. sox19b ENSDARG00000040266 532 1.651 0.765 - - - - - 0.886 - - SRY (sex determining region Y)-box 19b [Source:ZFIN;Acc:ZDB-GENE-010111-1]
78. si:ch73-21g5.7 ENSDARG00000093156 9412 1.65 0.722 - - - - - 0.928 - - si:ch73-21g5.7 [Source:ZFIN;Acc:ZDB-GENE-081104-260]
79. ncana 1537 1.65 0.838 - - - - - 0.812 - - neurocan a
80. gfap ENSDARG00000025301 5584 1.646 0.706 - - - - - 0.940 - - glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
81. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.643 - - - - - - 0.894 - 0.749 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
82. foxb1a ENSDARG00000089042 101 1.643 0.725 - - - - - 0.918 - - forkhead box B1a [Source:ZFIN;Acc:ZDB-GENE-990616-47]
83. pdzd4 175 1.637 - - - - - - 0.927 0.710 - PDZ domain containing 4, transcript variant X2
84. SGSM1 SGSM1 254 1.634 0.859 - - - - - 0.775 - -
85. mir219-2 129 1.633 0.750 - - - - - 0.883 - - microRNA 219-2
86. ENDOD1_7 ENDOD1_7 33 1.632 - 0.771 - - - - 0.861 - -
87. mir219-1 101 1.631 0.764 - - - - - 0.867 - - microRNA 219-1
88. pcp4l1 ENSDARG00000023181 117 1.629 - - - - - 0.727 - 0.902 - Purkinje cell protein 4 like 1 [Source:ZFIN;Acc:ZDB-GENE-040724-35]
89. rap2ip rap2ip 681 1.628 - - - - - - 0.844 - 0.784
90. npas3b npas3b 1446 1.626 0.742 - - - - - 0.884 - -
91. BX530409.1 BX530409.1 65 1.625 0.764 - - - - - 0.861 - -
92. glcea ENSDARG00000005095 33 1.625 0.764 - - - - - 0.861 - - glucuronic acid epimerase a [Source:ZFIN;Acc:ZDB-GENE-040630-9]
93. VSTM5 4 1.625 0.764 - - - - - 0.861 - - V-set and transmembrane domain containing 5
94. VOPP1_1 VOPP1_1 73 1.625 0.764 - - - - - 0.861 - -
95. slco4a1 ENSDARG00000075948 74 1.625 0.764 - - - - - 0.861 - - solute carrier organic anion transporter family, member 4A1 [Source:ZFIN;Acc:ZDB-GENE-060606-4]
96. rassf4 ENSDARG00000012460 43 1.625 0.764 - - - - - 0.861 - - Ras association (RalGDS/AF-6) domain family member 4 [Source:ZFIN;Acc:ZDB-GENE-050102-3]
97. VSTM2B VSTM2B 149 1.623 0.789 - - - - - 0.834 - -
98. gas5 279 1.622 - 0.761 - - - - 0.861 - - growth arrest-specific 5, transcript variant X4
99. nxph1 ENSDARG00000033447 182 1.62 0.787 - - - - - 0.833 - - neurexophilin 1 [Source:ZFIN;Acc:ZDB-GENE-040718-231]
100. ctnnd2b ENSDARG00000003779 964 1.618 - - - - - - 0.891 0.727 - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]

There are 2151 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA