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Results for Smarcal1

Gene Name Gene ID Reads Annotation
Smarcal1 ENSMUSG00000039354 331 SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:MGI Symbol;Acc:MGI:1859183]







Genes with expression patterns similar to Smarcal1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Smarcal1 ENSMUSG00000039354 331 6 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:MGI Symbol;Acc:MGI:1859183]
2. Gm26603 ENSMUSG00000097857 20 0.829 - - - 0.829 - - predicted gene, 26603 [Source:MGI Symbol;Acc:MGI:5477097]
3. Synm ENSMUSG00000030554 90 0.827 - - - 0.827 - - synemin, intermediate filament protein [Source:MGI Symbol;Acc:MGI:2661187]
4. Chst11 ENSMUSG00000034612 241 0.825 - - - 0.825 - - carbohydrate sulfotransferase 11 [Source:MGI Symbol;Acc:MGI:1927166]
5. Trib3 ENSMUSG00000032715 37 0.824 - - - 0.824 - - tribbles pseudokinase 3 [Source:MGI Symbol;Acc:MGI:1345675]
6. Gpr97 Gpr97 124 0.824 - - - 0.824 - -
7. Rnf183 ENSMUSG00000063851 14 0.819 - - - 0.819 - - ring finger protein 183 [Source:MGI Symbol;Acc:MGI:1923322]
8. Gm3712 ENSMUSG00000082371 14 0.819 - - - 0.819 - - predicted gene 3712 [Source:MGI Symbol;Acc:MGI:3781888]
9. Dbpht2 ENSMUSG00000029878 15 0.819 - - - 0.819 - - DNA binding protein with his-thr domain [Source:MGI Symbol;Acc:MGI:2679513]
10. Car5b ENSMUSG00000031373 107 0.818 - - - 0.818 - - carbonic anhydrase 5b, mitochondrial [Source:MGI Symbol;Acc:MGI:1926249]
11. Ano2 ENSMUSG00000038115 19 0.818 - - - 0.818 - - anoctamin 2 [Source:MGI Symbol;Acc:MGI:2387214]
12. Lgr6 ENSMUSG00000042793 34 0.818 - - - 0.818 - - leucine-rich repeat-containing G protein-coupled receptor 6 [Source:MGI Symbol;Acc:MGI:2441805]
13. Efcab12 ENSMUSG00000030321 63 0.814 - - - 0.814 - - EF-hand calcium binding domain 12 [Source:MGI Symbol;Acc:MGI:2681834]
14. Neil2 ENSMUSG00000035121 342 0.813 - - - 0.813 - - nei like 2 (E. coli) [Source:MGI Symbol;Acc:MGI:2686058]
15. A730045E13Rik ENSMUSG00000053979 16 0.813 - - - 0.813 - - RIKEN cDNA A730045E13 gene [Source:MGI Symbol;Acc:MGI:2685430]
16. Rbm43 ENSMUSG00000036249 142 0.812 - - - 0.812 - - RNA binding motif protein 43 [Source:MGI Symbol;Acc:MGI:1918934]
17. Znrd1as ENSMUSG00000036214 190 0.81 - - - 0.810 - - zinc ribbon domain containing 1, antisense [Source:MGI Symbol;Acc:MGI:1923666]
18. Gpr161 ENSMUSG00000040836 49 0.81 - - - 0.810 - - G protein-coupled receptor 161 [Source:MGI Symbol;Acc:MGI:2685054]
19. Star ENSMUSG00000031574 42 0.808 - - - 0.808 - - steroidogenic acute regulatory protein [Source:MGI Symbol;Acc:MGI:102760]
20. 4933427J07Rik ENSMUSG00000087267 104 0.807 - - - 0.807 - - RIKEN cDNA 4933427J07 gene [Source:MGI Symbol;Acc:MGI:1918470]
21. Gm13771 ENSMUSG00000083832 132 0.806 - - - 0.806 - - predicted gene 13771 [Source:MGI Symbol;Acc:MGI:3650181]
22. Cdk18 ENSMUSG00000026437 118 0.805 - - - 0.805 - - cyclin-dependent kinase 18 [Source:MGI Symbol;Acc:MGI:97518]
23. Bcmo1 Bcmo1 44 0.805 - - - 0.805 - -
24. E130311K13Rik ENSMUSG00000048581 4352 0.803 - - - 0.803 - - RIKEN cDNA E130311K13 gene [Source:MGI Symbol;Acc:MGI:3607716]
25. Rps18-ps3 ENSMUSG00000057657 245 0.801 - - - 0.801 - - ribosomal protein S18, pseudogene 3 [Source:MGI Symbol;Acc:MGI:3642474]
26. Oraov1 ENSMUSG00000031072 415 0.801 - - - 0.801 - - oral cancer overexpressed 1 [Source:MGI Symbol;Acc:MGI:1919534]
27. Slc16a12 ENSMUSG00000009378 53 0.797 - - - 0.797 - - solute carrier family 16 (monocarboxylic acid transporters), member 12 [Source:MGI Symbol;Acc:MGI:2147716]
28. Pramef17 ENSMUSG00000078509 32 0.796 - - - 0.796 - - PRAME family member 17 [Source:MGI Symbol;Acc:MGI:3650199]
29. Letm2 ENSMUSG00000037363 105 0.794 - - - 0.794 - - leucine zipper-EF-hand containing transmembrane protein 2 [Source:MGI Symbol;Acc:MGI:2444979]
30. Gm15708 ENSMUSG00000086894 110 0.792 - - - 0.792 - - predicted gene 15708 [Source:MGI Symbol;Acc:MGI:3783149]
31. Rab25 ENSMUSG00000008601 104 0.791 - - - 0.791 - - RAB25, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1858203]
32. Rmdn2 ENSMUSG00000036368 115 0.79 - - - 0.790 - - regulator of microtubule dynamics 2 [Source:MGI Symbol;Acc:MGI:2147043]
33. Ccm2l ENSMUSG00000027474 175 0.789 - - - 0.789 - - cerebral cavernous malformation 2-like [Source:MGI Symbol;Acc:MGI:2385159]
34. Ppp1r13b ENSMUSG00000021285 299 0.787 - - - 0.787 - - protein phosphatase 1, regulatory subunit 13B [Source:MGI Symbol;Acc:MGI:1336199]
35. Rps13 ENSMUSG00000090862 73 0.786 - - - 0.786 - - ribosomal protein S13 [Source:MGI Symbol;Acc:MGI:1915302]
36. Hist1h2ab ENSMUSG00000061615 94 0.779 - - - 0.779 - - histone cluster 1, H2ab [Source:MGI Symbol;Acc:MGI:2448306]
37. Hyal3 ENSMUSG00000036091 127 0.775 - - - 0.775 - - hyaluronoglucosaminidase 3 [Source:MGI Symbol;Acc:MGI:1330288]
38. Veph1 ENSMUSG00000027831 101 0.774 - - - 0.774 - - ventricular zone expressed PH domain-containing 1 [Source:MGI Symbol;Acc:MGI:1920039]
39. Gm13473 ENSMUSG00000083776 114 0.773 - - - 0.773 - - predicted gene 13473 [Source:MGI Symbol;Acc:MGI:3652338]
40. Gm15952 ENSMUSG00000085655 100 0.773 - - - 0.773 - - predicted gene 15952 [Source:MGI Symbol;Acc:MGI:3802149]
41. Tubd1 ENSMUSG00000020513 118 0.772 - - - 0.772 - - tubulin, delta 1 [Source:MGI Symbol;Acc:MGI:1891826]
42. Psmc1 ENSMUSG00000021178 7395 0.769 - - - 0.769 - - protease (prosome, macropain) 26S subunit, ATPase 1 [Source:MGI Symbol;Acc:MGI:106054]
43. Fam124b ENSMUSG00000043230 95 0.766 - - - 0.766 - - family with sequence similarity 124, member B [Source:MGI Symbol;Acc:MGI:3026880]
44. Alkbh6 ENSMUSG00000042831 746 0.766 - - - 0.766 - - alkB homolog 6 [Source:MGI Symbol;Acc:MGI:2142037]
45. Gm25663 ENSMUSG00000088323 172 0.765 - - - 0.765 - - predicted gene, 25663 [Source:MGI Symbol;Acc:MGI:5455440]
46. Map7 ENSMUSG00000019996 135 0.764 - - - 0.764 - - microtubule-associated protein 7 [Source:MGI Symbol;Acc:MGI:1328328]
47. Col12a1 ENSMUSG00000032332 826 0.762 - - - 0.762 - - collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
48. 2900008C10Rik 2900008C10Rik 240 0.761 - - - 0.761 - -
49. Gimap9 ENSMUSG00000051124 246 0.761 - - - 0.761 - - GTPase, IMAP family member 9 [Source:MGI Symbol;Acc:MGI:3511744]
50. Gm5665 Gm5665 82 0.761 - - - 0.761 - -
51. Fbxo27 ENSMUSG00000037463 111 0.759 - - - 0.759 - - F-box protein 27 [Source:MGI Symbol;Acc:MGI:2685007]
52. Gm10093 ENSMUSG00000061062 597 0.759 - - - 0.759 - - predicted pseudogene 10093 [Source:MGI Symbol;Acc:MGI:3704479]
53. BC002163 ENSMUSG00000081824 561 0.759 - - - 0.759 - - cDNA sequence BC002163 [Source:MGI Symbol;Acc:MGI:3612445]
54. Kbtbd8 ENSMUSG00000030031 184 0.758 - - - 0.758 - - kelch repeat and BTB (POZ) domain containing 8 [Source:MGI Symbol;Acc:MGI:2661430]
55. Ddx20 ENSMUSG00000027905 923 0.757 - - 0.757 - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Source:MGI Symbol;Acc:MGI:1858415]
56. 4731419I09Rik ENSMUSG00000097004 89 0.754 - - - 0.754 - - RIKEN cDNA 4731419I09 gene [Source:MGI Symbol;Acc:MGI:3704222]
57. Slc38a5 ENSMUSG00000031170 364 0.754 - - - 0.754 - - solute carrier family 38, member 5 [Source:MGI Symbol;Acc:MGI:2148066]
58. Ostm1 ENSMUSG00000038280 208 0.753 - - - 0.753 - - osteopetrosis associated transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:2655574]
59. Ptger4 ENSMUSG00000039942 133 0.753 - - - 0.753 - - prostaglandin E receptor 4 (subtype EP4) [Source:MGI Symbol;Acc:MGI:104311]
60. 3110082I17Rik ENSMUSG00000053553 775 0.751 - - - 0.751 - - RIKEN cDNA 3110082I17 gene [Source:MGI Symbol;Acc:MGI:1920462]
61. Camk1d ENSMUSG00000039145 117 0.751 - - - 0.751 - - calcium/calmodulin-dependent protein kinase ID [Source:MGI Symbol;Acc:MGI:2442190]
62. Oxsm ENSMUSG00000021786 115 0.748 - - - 0.748 - - 3-oxoacyl-ACP synthase, mitochondrial [Source:MGI Symbol;Acc:MGI:1918397]
63. Sgcd ENSMUSG00000020354 226 0.747 - - - 0.747 - - sarcoglycan, delta (dystrophin-associated glycoprotein) [Source:MGI Symbol;Acc:MGI:1346525]
64. Tmem259 ENSMUSG00000013858 819 0.744 - - - 0.744 - - transmembrane protein 259 [Source:MGI Symbol;Acc:MGI:2177957]
65. Cntn1 ENSMUSG00000055022 89 0.742 - - - 0.742 - - contactin 1 [Source:MGI Symbol;Acc:MGI:105980]
66. Kntc1 ENSMUSG00000029414 1121 0.742 - - - 0.742 - - kinetochore associated 1 [Source:MGI Symbol;Acc:MGI:2673709]
67. Gm10086 ENSMUSG00000060730 2124 0.741 - - - 0.741 - - predicted pseudogene 10086 [Source:MGI Symbol;Acc:MGI:3642342]
68. Fhl3 ENSMUSG00000032643 178 0.74 - - - - 0.740 - four and a half LIM domains 3 [Source:MGI Symbol;Acc:MGI:1341092]
69. AV099323 ENSMUSG00000087377 232 0.738 - - - - 0.738 - expressed sequence AV099323 [Source:MGI Symbol;Acc:MGI:2139252]
70. Gm10294 Gm10294 147 0.737 - - - 0.737 - -
71. Mboat1 ENSMUSG00000038732 169 0.735 - - - 0.735 - - membrane bound O-acyltransferase domain containing 1 [Source:MGI Symbol;Acc:MGI:2387184]
72. Krcc1 ENSMUSG00000053012 1828 0.735 - - 0.735 - - - lysine-rich coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1889377]
73. Naga ENSMUSG00000022453 178 0.735 - - - 0.735 - - N-acetyl galactosaminidase, alpha [Source:MGI Symbol;Acc:MGI:1261422]
74. 6430590A07Rik ENSMUSG00000097583, ENSMUSG00000116278 241 0.733 - - - 0.733 - - RIKEN cDNA 6430590A07 gene [Source:MGI Symbol;Acc:MGI:3648839]
75. Ranbp17 ENSMUSG00000040594 358 0.733 - - - 0.733 - - RAN binding protein 17 [Source:MGI Symbol;Acc:MGI:1929706]
76. Polg2 ENSMUSG00000020718 273 0.731 - - - 0.731 - - polymerase (DNA directed), gamma 2, accessory subunit [Source:MGI Symbol;Acc:MGI:1354947]
77. Lhfpl1 ENSMUSG00000041700 92 0.731 - - - - 0.731 - lipoma HMGIC fusion partner-like 1 [Source:MGI Symbol;Acc:MGI:1891214]
78. Saal1 ENSMUSG00000006763 2057 0.73 - - - 0.730 - - serum amyloid A-like 1 [Source:MGI Symbol;Acc:MGI:1926185]
79. Plin4 ENSMUSG00000002831 384 0.729 - - - 0.729 - - perilipin 4 [Source:MGI Symbol;Acc:MGI:1929709]
80. 2900056M20Rik 2900056M20Rik 458 0.729 - - - - 0.729 -
81. Zfp748 ENSMUSG00000095432 393 0.728 - - - 0.728 - - zinc finger protein 748 [Source:MGI Symbol;Acc:MGI:1916455]
82. 1700066M21Rik ENSMUSG00000038323 217 0.727 - - - 0.727 - - RIKEN cDNA 1700066M21 gene [Source:MGI Symbol;Acc:MGI:1920717]
83. Ss18l1 ENSMUSG00000039086 356 0.726 - - - 0.726 - - SS18, nBAF chromatin remodeling complex subunit like 1 [Source:MGI Symbol;Acc:MGI:2444061]
84. Sema4a ENSMUSG00000028064 151 0.725 - - - 0.725 - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [Source:MGI Symbol;Acc:MGI:107560]
85. Susd2 ENSMUSG00000006342 205 0.723 - - - 0.723 - - sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]
86. Icos ENSMUSG00000026009 50 0.722 - - - - 0.722 - inducible T cell co-stimulator [Source:MGI Symbol;Acc:MGI:1858745]
87. Polr3f ENSMUSG00000027427 1574 0.721 - - - 0.721 - - polymerase (RNA) III (DNA directed) polypeptide F [Source:MGI Symbol;Acc:MGI:1924086]
88. Jagn1 ENSMUSG00000051256 2082 0.721 - - - 0.721 - - jagunal homolog 1 [Source:MGI Symbol;Acc:MGI:1915017]
89. Cd302 ENSMUSG00000060703 214 0.721 - - - - 0.721 - CD302 antigen [Source:MGI Symbol;Acc:MGI:1913455]
90. Atp5l-ps1 ENSMUSG00000072460 79 0.718 - - - - 0.718 - ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 1 [Source:MGI Symbol;Acc:MGI:2153586]
91. Tmem101 ENSMUSG00000020921 556 0.716 - - - 0.716 - - transmembrane protein 101 [Source:MGI Symbol;Acc:MGI:1923797]
92. Zfand2a ENSMUSG00000053581 353 0.716 - - - 0.716 - - zinc finger, AN1-type domain 2A [Source:MGI Symbol;Acc:MGI:2140729]
93. Pcdh11x ENSMUSG00000034755 188 0.715 - - - 0.715 - - protocadherin 11 X-linked [Source:MGI Symbol;Acc:MGI:2442849]
94. 2810011L19Rik 2810011L19Rik 69 0.714 - - - - 0.714 -
95. Hsd17b10 ENSMUSG00000025260 4099 0.713 - - - 0.713 - - hydroxysteroid (17-beta) dehydrogenase 10 [Source:MGI Symbol;Acc:MGI:1333871]
96. Atg13 ENSMUSG00000027244 1178 0.712 - - - 0.712 - - autophagy related 13 [Source:MGI Symbol;Acc:MGI:1196429]
97. Abtb2 ENSMUSG00000032724 647 0.712 - - - 0.712 - - ankyrin repeat and BTB (POZ) domain containing 2 [Source:MGI Symbol;Acc:MGI:2139365]
98. Sgsm1 ENSMUSG00000042216 839 0.712 - - - 0.712 - - small G protein signaling modulator 1 [Source:MGI Symbol;Acc:MGI:107320]
99. Socs5 ENSMUSG00000037104 783 0.71 - - 0.710 - - - suppressor of cytokine signaling 5 [Source:MGI Symbol;Acc:MGI:2385459]
100. Gm22662 ENSMUSG00000093031 187 0.708 - - - - 0.708 - predicted gene, 22662 [Source:MGI Symbol;Acc:MGI:5452439]

There are 8 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA