Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for LINC00550

Gene Name Gene ID Reads Annotation
LINC00550 ENSG00000281778 12 long intergenic non-protein coding RNA 550 [Source:HGNC Symbol;Acc:HGNC:43688]



Genes with expression patterns similar to LINC00550

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. LINC00550 ENSG00000281778 12 2 1.000 1.000 long intergenic non-protein coding RNA 550 [Source:HGNC Symbol;Acc:HGNC:43688]
2. LOC400794 5 1 1.000 - uncharacterized LOC400794
3. KCNH3 ENSG00000135519 8 1 1.000 - potassium voltage-gated channel subfamily H member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
4. LOC101928174 3 1 1.000 - uncharacterized LOC101928174
5. PDIA2 ENSG00000185615 4 1 1.000 - protein disulfide isomerase family A member 2 [Source:HGNC Symbol;Acc:HGNC:14180]
6. LOC101927523 4 1 1.000 - uncharacterized LOC101927523
7. HCG9 ENSG00000204625, ENSG00000206504, ENSG00000227647, ENSG00000234313, ENSG00000234599, ENSG00000236579, ENSG00000237812 3 1 1.000 - HLA complex group 9 [Source:HGNC Symbol;Acc:HGNC:21243]
8. OR51B4 ENSG00000183251 5 1 1.000 - olfactory receptor family 51 subfamily B member 4 [Source:HGNC Symbol;Acc:HGNC:14708]
9. GIP ENSG00000159224 8 1 1.000 - gastric inhibitory polypeptide [Source:HGNC Symbol;Acc:HGNC:4270]
10. LINC01248 ENSG00000224128 8 1 1.000 - long intergenic non-protein coding RNA 1248 [Source:HGNC Symbol;Acc:HGNC:49842]
11. SAMD15 ENSG00000100583 16 0.985 0.985 - sterile alpha motif domain containing 15 [Source:HGNC Symbol;Acc:HGNC:18631]
12. VAX1 ENSG00000148704 13 0.971 0.971 - ventral anterior homeobox 1 [Source:HGNC Symbol;Acc:HGNC:12660]
13. FBXO40 ENSG00000163833 9 0.97 0.970 - F-box protein 40 [Source:HGNC Symbol;Acc:HGNC:29816]
14. DPPA3 ENSG00000187569 33 0.952 0.952 - developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:HGNC:19199]
15. FTH1P18 ENSG00000243048 8 0.934 0.934 - ferritin heavy chain 1 pseudogene 18 [Source:HGNC Symbol;Acc:HGNC:3988]
16. FLT3 ENSG00000122025 7 0.933 0.933 - fms related tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3765]
17. CRSP8P ENSG00000248569 12 0.933 0.933 - mediator complex subunit 27 pseudogene [Source:NCBI gene;Acc:441089]
18. SLC51A ENSG00000163959 16 0.931 0.931 - solute carrier family 51 alpha subunit [Source:HGNC Symbol;Acc:HGNC:29955]
19. TEC ENSG00000135605 11 0.927 0.927 - tec protein tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11719]
20. LOC100506258 20 0.927 0.927 - uncharacterized LOC100506258
21. PCDHGC3 ENSG00000240184 7 0.927 0.927 - protocadherin gamma subfamily C, 3 [Source:HGNC Symbol;Acc:HGNC:8716]
22. CCNYL2 ENSG00000182632 8 0.927 0.927 - cyclin Y-like 2 (pseudogene) [Source:HGNC Symbol;Acc:HGNC:23495]
23. SERPINE3 ENSG00000253309 5 0.927 0.927 - serpin family E member 3 [Source:HGNC Symbol;Acc:HGNC:24774]
24. HS6ST3 ENSG00000185352 183 0.923 0.923 - heparan sulfate 6-O-sulfotransferase 3 [Source:HGNC Symbol;Acc:HGNC:19134]
25. NLRP8 ENSG00000179709 25 0.913 0.913 - NLR family pyrin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:22940]
26. DCAF4L2 ENSG00000176566 10 0.912 0.912 - DDB1 and CUL4 associated factor 4 like 2 [Source:HGNC Symbol;Acc:HGNC:26657]
27. MAMDC2 ENSG00000165072, ENSG00000278608 173 0.899 0.899 - MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]
28. C17orf102 ENSG00000197322 32 0.898 0.898 - chromosome 17 open reading frame 102 [Source:HGNC Symbol;Acc:HGNC:34412]
29. LINC00479 ENSG00000236384 55 0.895 0.895 - long intergenic non-protein coding RNA 479 [Source:HGNC Symbol;Acc:HGNC:19727]
30. TCL1A ENSG00000100721 42 0.895 0.895 - T cell leukemia/lymphoma 1A [Source:HGNC Symbol;Acc:HGNC:11648]
31. LOC644919 10 0.894 0.894 - uncharacterized LOC644919, transcript variant 2
32. LOC101928324 6 0.893 0.893 - uncharacterized LOC101928324, transcript variant 2
33. TPK1 ENSG00000196511, ENSG00000285075 76 0.888 0.888 - thiamin pyrophosphokinase 1 [Source:HGNC Symbol;Acc:HGNC:17358]
34. LLPH-AS1 6 0.883 0.883 - LLPH antisense RNA 1 (head to head)
35. GOLGA6L5P ENSG00000230373 26 0.881 0.881 - golgin A6 family-like 5, pseudogene [Source:HGNC Symbol;Acc:HGNC:30472]
36. CTD-2270F17.1 ENSG00000253647 9 0.88 0.880 - uncharacterized LOC101928033 [Source:NCBI gene;Acc:101928033]
37. LOC441455 16 0.876 0.876 - makorin ring finger protein 1 pseudogene
38. LINC00473 12 0.87 0.870 - long intergenic non-protein coding RNA 473, transcript variant 2
39. CERS3-AS1 ENSG00000259430 5 0.868 0.868 - CERS3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51431]
40. AKR1B15 ENSG00000227471 26 0.866 0.866 - aldo-keto reductase family 1 member B15 [Source:HGNC Symbol;Acc:HGNC:37281]
41. GOLGA8S ENSG00000261739 6 0.865 0.865 - golgin A8 family member S [Source:HGNC Symbol;Acc:HGNC:44409]
42. SLC13A5 ENSG00000141485 37 0.852 0.852 - solute carrier family 13 member 5 [Source:HGNC Symbol;Acc:HGNC:23089]
43. TOPAZ1 ENSG00000173769 9 0.848 0.848 - testis and ovary specific PAZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24746]
44. KIAA1045 KIAA1045 12 0.847 0.847 -
45. AMY2A ENSG00000243480 10 0.845 0.845 - amylase, alpha 2A (pancreatic) [Source:HGNC Symbol;Acc:HGNC:477]
46. PLP2 ENSG00000102007 138 0.84 0.840 - proteolipid protein 2 [Source:HGNC Symbol;Acc:HGNC:9087]
47. PPP1R3A ENSG00000154415 5 0.84 0.840 - protein phosphatase 1 regulatory subunit 3A [Source:HGNC Symbol;Acc:HGNC:9291]
48. LOC101928163 24 0.838 0.838 - uncharacterized LOC101928163
49. LOC646029 53 0.832 0.832 - uncharacterized LOC646029
50. WDR49 ENSG00000174776 7 0.829 - 0.829 WD repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:26587]
51. SMR3B ENSG00000171201 7 0.823 0.823 - submaxillary gland androgen regulated protein 3B [Source:HGNC Symbol;Acc:HGNC:17326]
52. LGSN ENSG00000146166 17 0.823 0.823 - lengsin, lens protein with glutamine synthetase domain [Source:HGNC Symbol;Acc:HGNC:21016]
53. LCE1C ENSG00000197084 6 0.823 - 0.823 late cornified envelope 1C [Source:HGNC Symbol;Acc:HGNC:29464]
54. KRT6B ENSG00000185479 3 0.823 - 0.823 keratin 6B [Source:HGNC Symbol;Acc:HGNC:6444]
55. RUFY4 ENSG00000188282 3 0.823 - 0.823 RUN and FYVE domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24804]
56. CASC23 ENSG00000255420 3 0.823 - 0.823 cancer susceptibility 23 [Source:HGNC Symbol;Acc:HGNC:50865]
57. RBP7 ENSG00000162444 17 0.822 0.822 - retinol binding protein 7 [Source:HGNC Symbol;Acc:HGNC:30316]
58. IGSF22 ENSG00000179057 6 0.821 - 0.821 immunoglobulin superfamily member 22 [Source:HGNC Symbol;Acc:HGNC:26750]
59. DFNB59 73 0.816 0.816 - deafness, autosomal recessive 59, transcript variant X6
60. PCDHGC5 ENSG00000240764 3 0.814 - 0.814 protocadherin gamma subfamily C, 5 [Source:HGNC Symbol;Acc:HGNC:8718]
61. CCDC64 CCDC64 80 0.808 0.808 -
62. LALBA ENSG00000167531 3 0.807 - 0.807 lactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]
63. ZNF365 ENSG00000138311 16 0.807 - 0.807 zinc finger protein 365 [Source:HGNC Symbol;Acc:HGNC:18194]
64. LINC00890 123 0.798 0.798 - long intergenic non-protein coding RNA 890
65. KLHL1 ENSG00000150361 29 0.796 - 0.796 kelch like family member 1 [Source:HGNC Symbol;Acc:HGNC:6352]
66. LOC391322 5 0.795 - 0.795 D-dopachrome tautomerase-like
67. DEPDC1-AS1 ENSG00000234264 17 0.795 0.795 - DEPDC1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:50592]
68. FAM159A 45 0.792 0.792 - family with sequence similarity 159 member A, transcript variant X6
69. BST1 ENSG00000109743 148 0.782 0.782 - bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:HGNC:1118]
70. ZNF705E ENSG00000214534 7 0.777 0.777 - zinc finger protein 705E [Source:HGNC Symbol;Acc:HGNC:33203]
71. FLJ41941 10 0.774 0.774 - uncharacterized LOC100192420
72. MYO1H ENSG00000174527 18 0.774 0.774 - myosin IH [Source:HGNC Symbol;Acc:HGNC:13879]
73. KSR2 ENSG00000171435 41 0.774 0.774 - kinase suppressor of ras 2 [Source:HGNC Symbol;Acc:HGNC:18610]
74. FAM72B ENSG00000188610 12 0.773 - 0.773 family with sequence similarity 72 member B [Source:HGNC Symbol;Acc:HGNC:24805]
75. KLK8 ENSG00000129455 12 0.767 0.767 - kallikrein related peptidase 8 [Source:HGNC Symbol;Acc:HGNC:6369]
76. SIRPG ENSG00000089012 6 0.765 - 0.765 signal regulatory protein gamma [Source:HGNC Symbol;Acc:HGNC:15757]
77. PCDHB2 ENSG00000112852 96 0.762 0.762 - protocadherin beta 2 [Source:HGNC Symbol;Acc:HGNC:8687]
78. VCX ENSG00000182583 4 0.761 - 0.761 variable charge X-linked [Source:HGNC Symbol;Acc:HGNC:12667]
79. LINGO2 ENSG00000174482 214 0.76 0.760 - leucine rich repeat and Ig domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21207]
80. LRRTM3 ENSG00000198739 81 0.756 0.756 - leucine rich repeat transmembrane neuronal 3 [Source:HGNC Symbol;Acc:HGNC:19410]
81. GSTM2 ENSG00000213366 24 0.755 - 0.755 glutathione S-transferase mu 2 [Source:HGNC Symbol;Acc:HGNC:4634]
82. PFN4 ENSG00000176732 26 0.754 0.754 - profilin family member 4 [Source:HGNC Symbol;Acc:HGNC:31103]
83. SUN3 ENSG00000164744 7 0.753 - 0.753 Sad1 and UNC84 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:22429]
84. IRAIN ENSG00000259424 65 0.752 0.752 - IGF1R antisense imprinted non-protein coding RNA [Source:HGNC Symbol;Acc:HGNC:50365]
85. HM13-AS1 ENSG00000230613 35 0.746 0.746 - HM13 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41940]
86. ZNF653 ENSG00000161914 11 0.742 0.742 - zinc finger protein 653 [Source:HGNC Symbol;Acc:HGNC:25196]
87. ZNF420 ENSG00000197050 89 0.741 0.741 - zinc finger protein 420 [Source:HGNC Symbol;Acc:HGNC:20649]
88. MGARP ENSG00000137463 987 0.74 0.740 - mitochondria localized glutamic acid rich protein [Source:HGNC Symbol;Acc:HGNC:29969]
89. COL20A1 ENSG00000101203 8 0.74 0.740 - collagen type XX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:14670]
90. TCAP ENSG00000173991 20 0.738 0.738 - titin-cap [Source:HGNC Symbol;Acc:HGNC:11610]
91. SLC10A2 ENSG00000125255 30 0.738 - 0.738 solute carrier family 10 member 2 [Source:HGNC Symbol;Acc:HGNC:10906]
92. ATXN3L ENSG00000123594 6 0.737 0.737 - ataxin 3 like [Source:HGNC Symbol;Acc:HGNC:24173]
93. PLD1 ENSG00000075651 376 0.737 0.737 - phospholipase D1 [Source:HGNC Symbol;Acc:HGNC:9067]
94. SYCE2 ENSG00000161860 20 0.737 0.737 - synaptonemal complex central element protein 2 [Source:HGNC Symbol;Acc:HGNC:27411]
95. MS4A10 ENSG00000172689 10 0.737 0.737 - membrane spanning 4-domains A10 [Source:HGNC Symbol;Acc:HGNC:13368]
96. DCANP1 ENSG00000251380 5 0.736 - 0.736 dendritic cell associated nuclear protein [Source:HGNC Symbol;Acc:HGNC:24459]
97. CAPN12 ENSG00000182472 11 0.735 0.735 - calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
98. SEMA6A-AS1 ENSG00000248445 15 0.733 - 0.733 SEMA6A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51110]
99. LOC100131655 16 0.732 - 0.732 uncharacterized LOC100131655
100. DAPK1 ENSG00000196730 815 0.731 0.731 - death associated protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:2674]

There are 17 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA