Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SCN3A

Gene Name Gene ID Reads Annotation
SCN3A ENSG00000153253 621 sodium voltage-gated channel alpha subunit 3 [Source:HGNC Symbol;Acc:HGNC:10590]



Genes with expression patterns similar to SCN3A

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. SCN3A ENSG00000153253 621 2 1.000 1.000 sodium voltage-gated channel alpha subunit 3 [Source:HGNC Symbol;Acc:HGNC:10590]
2. SV2C ENSG00000122012 837 1.857 0.945 0.912 synaptic vesicle glycoprotein 2C [Source:HGNC Symbol;Acc:HGNC:30670]
3. NEFL ENSG00000277586 6204 1.838 0.919 0.919 neurofilament light [Source:HGNC Symbol;Acc:HGNC:7739]
4. STMN2 ENSG00000104435 16286 1.835 0.926 0.909 stathmin 2 [Source:HGNC Symbol;Acc:HGNC:10577]
5. RTN1 ENSG00000139970 4545 1.82 0.921 0.899 reticulon 1 [Source:HGNC Symbol;Acc:HGNC:10467]
6. NEFM ENSG00000104722 6565 1.796 0.931 0.865 neurofilament medium [Source:HGNC Symbol;Acc:HGNC:7734]
7. GAP43 ENSG00000172020 9990 1.794 0.916 0.878 growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]
8. INA ENSG00000148798 12811 1.78 0.926 0.854 internexin neuronal intermediate filament protein alpha [Source:HGNC Symbol;Acc:HGNC:6057]
9. MAPT ENSG00000186868, ENSG00000276155, ENSG00000277956 1829 1.763 0.927 0.836 microtubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]
10. SST ENSG00000157005 12887 1.76 0.892 0.868 somatostatin [Source:HGNC Symbol;Acc:HGNC:11329]
11. MYT1 ENSG00000196132, ENSG00000276876 1089 1.756 0.900 0.856 myelin transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7622]
12. PDLIM1 ENSG00000107438 11977 1.745 0.901 0.844 PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
13. MLLT11 ENSG00000213190 18099 1.74 0.921 0.819 MLLT11, transcription factor 7 cofactor [Source:HGNC Symbol;Acc:HGNC:16997]
14. HMP19 643 1.727 0.887 0.840 HMP19 protein
15. GDAP1L1 ENSG00000124194 1388 1.722 0.893 0.829 ganglioside induced differentiation associated protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:4213]
16. TUBB3 ENSG00000258947 53998 1.721 0.859 0.862 tubulin beta 3 class III [Source:HGNC Symbol;Acc:HGNC:20772]
17. ARHGAP36 ENSG00000147256 614 1.717 0.833 0.884 Rho GTPase activating protein 36 [Source:HGNC Symbol;Acc:HGNC:26388]
18. CDK5R1 ENSG00000176749 4151 1.715 0.859 0.856 cyclin dependent kinase 5 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:1775]
19. TRIM36 ENSG00000152503 452 1.714 0.827 0.887 tripartite motif containing 36 [Source:HGNC Symbol;Acc:HGNC:16280]
20. REEP1 ENSG00000068615 2132 1.711 0.887 0.824 receptor accessory protein 1 [Source:HGNC Symbol;Acc:HGNC:25786]
21. ATP1A3 ENSG00000105409 428 1.709 0.812 0.897 ATPase Na+/K+ transporting subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:801]
22. FABP7 ENSG00000164434 1064 1.701 0.852 0.849 fatty acid binding protein 7 [Source:HGNC Symbol;Acc:HGNC:3562]
23. TUBA1A ENSG00000167552 83799 1.69 0.870 0.820 tubulin alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]
24. ELAVL2 ENSG00000107105 5067 1.688 0.938 0.750 ELAV like RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:3313]
25. TUBB2A ENSG00000137267 4508 1.682 0.847 0.835 tubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]
26. ENO2 ENSG00000111674 2931 1.672 0.842 0.830 enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]
27. SYT4 ENSG00000132872 928 1.669 0.791 0.878 synaptotagmin 4 [Source:HGNC Symbol;Acc:HGNC:11512]
28. KIF5C ENSG00000168280, ENSG00000276734 1294 1.665 0.777 0.888 kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
29. CRMP1 ENSG00000072832 9692 1.659 0.885 0.774 collapsin response mediator protein 1 [Source:HGNC Symbol;Acc:HGNC:2365]
30. CCDC184 ENSG00000177875 785 1.656 0.782 0.874 coiled-coil domain containing 184 [Source:HGNC Symbol;Acc:HGNC:33749]
31. KLC1 ENSG00000126214 6387 1.653 0.809 0.844 kinesin light chain 1 [Source:HGNC Symbol;Acc:HGNC:6387]
32. NELL1 ENSG00000165973 2345 1.651 0.876 0.775 neural EGFL like 1 [Source:HGNC Symbol;Acc:HGNC:7750]
33. GNAO1 ENSG00000087258 567 1.647 0.825 0.822 G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]
34. ELAVL4 ENSG00000162374 5082 1.644 0.825 0.819 ELAV like RNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:3315]
35. RAB6B ENSG00000154917 1104 1.642 0.786 0.856 RAB6B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:14902]
36. L1CAM ENSG00000198910 1652 1.641 0.888 0.753 L1 cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:6470]
37. SYT1 ENSG00000067715 4379 1.64 0.881 0.759 synaptotagmin 1 [Source:HGNC Symbol;Acc:HGNC:11509]
38. KIF1A ENSG00000130294 2920 1.625 0.917 0.708 kinesin family member 1A [Source:HGNC Symbol;Acc:HGNC:888]
39. ATP6V1G2 ENSG00000206445, ENSG00000213760, ENSG00000226850, ENSG00000227587, ENSG00000230900, ENSG00000234668, ENSG00000234920 2106 1.625 0.823 0.802 ATPase H+ transporting V1 subunit G2 [Source:HGNC Symbol;Acc:HGNC:862]
40. ECEL1 ENSG00000171551 286 1.622 0.774 0.848 endothelin converting enzyme like 1 [Source:HGNC Symbol;Acc:HGNC:3147]
41. ELAVL3 ENSG00000196361 2164 1.622 0.815 0.807 ELAV like RNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:3314]
42. RBP1 ENSG00000114115 35038 1.617 0.811 0.806 retinol binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9919]
43. AKAP6 ENSG00000151320 580 1.617 0.763 0.854 A-kinase anchoring protein 6 [Source:HGNC Symbol;Acc:HGNC:376]
44. DCX ENSG00000077279 9569 1.614 0.883 0.731 doublecortin [Source:HGNC Symbol;Acc:HGNC:2714]
45. UBE2QL1 ENSG00000215218 1320 1.61 0.842 0.768 ubiquitin conjugating enzyme E2 Q family like 1 [Source:HGNC Symbol;Acc:HGNC:37269]
46. NSG1 ENSG00000168824 2797 1.608 0.842 0.766 neuronal vesicle trafficking associated 1 [Source:HGNC Symbol;Acc:HGNC:18790]
47. CHODL ENSG00000154645 212 1.607 0.882 0.725 chondrolectin [Source:HGNC Symbol;Acc:HGNC:17807]
48. PGM2L1 ENSG00000165434 4182 1.606 0.835 0.771 phosphoglucomutase 2 like 1 [Source:HGNC Symbol;Acc:HGNC:20898]
49. TERF2IP ENSG00000166848 18929 1.606 0.865 0.741 TERF2 interacting protein [Source:HGNC Symbol;Acc:HGNC:19246]
50. DBNDD1 ENSG00000003249 1043 1.601 0.808 0.793 dysbindin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28455]
51. SNCG ENSG00000173267 1866 1.598 0.792 0.806 synuclein gamma [Source:HGNC Symbol;Acc:HGNC:11141]
52. MAPRE2 ENSG00000166974 5413 1.597 0.856 0.741 microtubule associated protein RP/EB family member 2 [Source:HGNC Symbol;Acc:HGNC:6891]
53. ISLR2 ENSG00000167178 161 1.593 0.746 0.847 immunoglobulin superfamily containing leucine rich repeat 2 [Source:HGNC Symbol;Acc:HGNC:29286]
54. AP3B2 ENSG00000103723 307 1.59 0.753 0.837 adaptor related protein complex 3 subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:567]
55. RUNDC3B ENSG00000105784 261 1.587 0.721 0.866 RUN domain containing 3B [Source:HGNC Symbol;Acc:HGNC:30286]
56. RET ENSG00000165731 339 1.574 0.785 0.789 ret proto-oncogene [Source:HGNC Symbol;Acc:HGNC:9967]
57. GAB2 ENSG00000033327 1360 1.573 0.808 0.765 GRB2 associated binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14458]
58. CAMK2N1 ENSG00000162545 10727 1.572 0.835 0.737 calcium/calmodulin dependent protein kinase II inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:24190]
59. STMN4 ENSG00000015592 748 1.568 0.774 0.794 stathmin 4 [Source:HGNC Symbol;Acc:HGNC:16078]
60. NGFR ENSG00000064300 5047 1.565 0.820 0.745 nerve growth factor receptor [Source:HGNC Symbol;Acc:HGNC:7809]
61. MAP2 ENSG00000078018 3573 1.564 0.797 0.767 microtubule associated protein 2 [Source:HGNC Symbol;Acc:HGNC:6839]
62. GNG3 ENSG00000162188 958 1.556 0.752 0.804 G protein subunit gamma 3 [Source:HGNC Symbol;Acc:HGNC:4405]
63. SEZ6L2 ENSG00000174938 1533 1.552 0.735 0.817 seizure related 6 homolog like 2 [Source:HGNC Symbol;Acc:HGNC:30844]
64. Sep-03 Sep-03 2608 1.551 0.777 0.774
65. RBFOX1 ENSG00000078328 852 1.541 0.715 0.826 RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]
66. BASP1 ENSG00000176788 18176 1.54 0.836 0.704 brain abundant membrane attached signal protein 1 [Source:HGNC Symbol;Acc:HGNC:957]
67. SCN3B ENSG00000166257 491 1.53 0.735 0.795 sodium voltage-gated channel beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:20665]
68. GLRA2 ENSG00000101958 149 1.525 0.758 0.767 glycine receptor alpha 2 [Source:HGNC Symbol;Acc:HGNC:4327]
69. SRRM4 ENSG00000139767 1060 1.522 0.805 0.717 serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
70. TAGLN3 ENSG00000144834 10185 1.522 0.742 0.780 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
71. Mar-04 Mar-04 149 1.51 0.716 0.794
72. CALCB ENSG00000175868 1967 1.506 0.721 0.785 calcitonin related polypeptide beta [Source:HGNC Symbol;Acc:HGNC:1438]
73. STMN3 ENSG00000197457 2808 1.497 0.760 0.737 stathmin 3 [Source:HGNC Symbol;Acc:HGNC:15926]
74. SMPD3 ENSG00000103056 241 1.488 0.766 0.722 sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
75. CEND1 ENSG00000184524 300 1.488 0.725 0.763 cell cycle exit and neuronal differentiation 1 [Source:HGNC Symbol;Acc:HGNC:24153]
76. TUBB2B ENSG00000137285 35642 1.487 0.745 0.742 tubulin beta 2B class IIb [Source:HGNC Symbol;Acc:HGNC:30829]
77. PHF21B ENSG00000056487 2704 1.482 0.731 0.751 PHD finger protein 21B [Source:HGNC Symbol;Acc:HGNC:25161]
78. PHACTR3 ENSG00000087495 749 1.476 0.705 0.771 phosphatase and actin regulator 3 [Source:HGNC Symbol;Acc:HGNC:15833]
79. SCG3 ENSG00000104112 681 1.475 0.759 0.716 secretogranin III [Source:HGNC Symbol;Acc:HGNC:13707]
80. VSTM2A ENSG00000170419 227 1.471 0.752 0.719 V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
81. PID1 ENSG00000153823 649 1.444 0.717 0.727 phosphotyrosine interaction domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26084]
82. RBFOX3 ENSG00000167281 329 1.443 0.709 0.734 RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097]
83. FAM19A5 ENSG00000219438 1353 1.439 0.703 0.736 family with sequence similarity 19 member A5, C-C motif chemokine like [Source:HGNC Symbol;Acc:HGNC:21592]
84. GNG4 ENSG00000168243, ENSG00000282972 1085 1.435 0.701 0.734 G protein subunit gamma 4 [Source:HGNC Symbol;Acc:HGNC:4407]
85. EPB41L1 ENSG00000088367 2310 1.434 0.712 0.722 erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
86. SCML4 ENSG00000146285 198 1.419 0.714 0.705 Scm polycomb group protein like 4 [Source:HGNC Symbol;Acc:HGNC:21397]
87. LOC101929563 1404 0.91 0.910 - uncharacterized LOC101929563
88. SYP ENSG00000102003 170 0.906 - 0.906 synaptophysin [Source:HGNC Symbol;Acc:HGNC:11506]
89. SLC18A3 ENSG00000187714 4213 0.896 0.896 - solute carrier family 18 member A3 [Source:HGNC Symbol;Acc:HGNC:10936]
90. ISL1 ENSG00000016082 4314 0.896 0.896 - ISL LIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6132]
91. CNST ENSG00000162852 1551 0.889 0.889 - consortin, connexin sorting protein [Source:HGNC Symbol;Acc:HGNC:26486]
92. ISL2 ENSG00000159556 593 0.889 0.889 - ISL LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:18524]
93. OLIG2 ENSG00000205927 533 0.88 0.880 - oligodendrocyte transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:9398]
94. NKAIN3 ENSG00000185942 2284 0.879 0.879 - sodium/potassium transporting ATPase interacting 3 [Source:HGNC Symbol;Acc:HGNC:26829]
95. CLASP2 ENSG00000163539 5119 0.877 0.877 - cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
96. AMER2 ENSG00000165566 317 0.876 - 0.876 APC membrane recruitment protein 2 [Source:HGNC Symbol;Acc:HGNC:26360]
97. MNX1 ENSG00000130675 512 0.875 0.875 - motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
98. POU2F2 ENSG00000028277 2245 0.873 0.873 - POU class 2 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9213]
99. CADPS ENSG00000163618 1353 0.871 0.871 - calcium dependent secretion activator [Source:HGNC Symbol;Acc:HGNC:1426]
100. FXYD7 ENSG00000221946 253 0.867 0.867 - FXYD domain containing ion transport regulator 7 [Source:HGNC Symbol;Acc:HGNC:4034]

There are 150 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA