Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for MALAT1

Gene Name Gene ID Reads Annotation
MALAT1 ENSG00000251562 82061 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]



Genes with expression patterns similar to MALAT1

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. MALAT1 ENSG00000251562 82061 2 1.000 1.000 metastasis associated lung adenocarcinoma transcript 1 [Source:HGNC Symbol;Acc:HGNC:29665]
2. ANKRD12 ENSG00000101745 7317 0.879 - 0.879 ankyrin repeat domain 12 [Source:HGNC Symbol;Acc:HGNC:29135]
3. SEMA6D ENSG00000137872 5938 0.842 - 0.842 semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
4. PCDH7 ENSG00000169851 5460 0.822 - 0.822 protocadherin 7 [Source:HGNC Symbol;Acc:HGNC:8659]
5. BAZ2B ENSG00000123636 5413 0.821 - 0.821 bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
6. ZFHX4 ENSG00000091656 12505 0.82 - 0.820 zinc finger homeobox 4 [Source:HGNC Symbol;Acc:HGNC:30939]
7. CLK1 ENSG00000013441 7068 0.807 - 0.807 CDC like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
8. PGAP1 ENSG00000197121 3543 0.807 - 0.807 post-GPI attachment to proteins 1 [Source:HGNC Symbol;Acc:HGNC:25712]
9. REST ENSG00000084093 6739 0.806 - 0.806 RE1 silencing transcription factor [Source:HGNC Symbol;Acc:HGNC:9966]
10. CCDC88A ENSG00000115355 6649 0.803 - 0.803 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
11. BOD1L1 ENSG00000038219 2981 0.798 - 0.798 biorientation of chromosomes in cell division 1 like 1 [Source:HGNC Symbol;Acc:HGNC:31792]
12. CNTN4 ENSG00000144619 2198 0.797 - 0.797 contactin 4 [Source:HGNC Symbol;Acc:HGNC:2174]
13. ARID4B ENSG00000054267 4826 0.796 - 0.796 AT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]
14. AKAP9 ENSG00000127914 5166 0.79 - 0.790 A-kinase anchoring protein 9 [Source:HGNC Symbol;Acc:HGNC:379]
15. CHD9 ENSG00000177200 17642 0.789 - 0.789 chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]
16. CADM1 ENSG00000182985 19971 0.787 - 0.787 cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
17. ATP2B1 ENSG00000070961 8805 0.784 - 0.784 ATPase plasma membrane Ca2+ transporting 1 [Source:HGNC Symbol;Acc:HGNC:814]
18. ETV1 ENSG00000006468 3169 0.784 - 0.784 ETS variant 1 [Source:HGNC Symbol;Acc:HGNC:3490]
19. EIF4A2 ENSG00000156976 16625 0.783 - 0.783 eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:HGNC:3284]
20. CEP290 ENSG00000198707 1212 0.783 - 0.783 centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
21. TCAF1 ENSG00000198420 4902 0.781 - 0.781 TRPM8 channel associated factor 1 [Source:HGNC Symbol;Acc:HGNC:22201]
22. GCC2 ENSG00000135968 2012 0.781 - 0.781 GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
23. ITGAV ENSG00000138448 3664 0.781 - 0.781 integrin subunit alpha V [Source:HGNC Symbol;Acc:HGNC:6150]
24. CCNG2 ENSG00000138764 6322 0.78 - 0.780 cyclin G2 [Source:HGNC Symbol;Acc:HGNC:1593]
25. MCC ENSG00000171444 6659 0.773 - 0.773 MCC, WNT signaling pathway regulator [Source:HGNC Symbol;Acc:HGNC:6935]
26. ADAM10 ENSG00000137845 5981 0.773 - 0.773 ADAM metallopeptidase domain 10 [Source:HGNC Symbol;Acc:HGNC:188]
27. CDH11 ENSG00000140937 5411 0.771 - 0.771 cadherin 11 [Source:HGNC Symbol;Acc:HGNC:1750]
28. ZMYM2 ENSG00000121741 4271 0.77 - 0.770 zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
29. ZNF518A ENSG00000177853 2730 0.766 - 0.766 zinc finger protein 518A [Source:HGNC Symbol;Acc:HGNC:29009]
30. CDK6 ENSG00000105810 5229 0.765 - 0.765 cyclin dependent kinase 6 [Source:HGNC Symbol;Acc:HGNC:1777]
31. FZD7 ENSG00000155760 5215 0.764 - 0.764 frizzled class receptor 7 [Source:HGNC Symbol;Acc:HGNC:4045]
32. ROCK1 ENSG00000067900 3375 0.763 - 0.763 Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]
33. KIAA2026 ENSG00000183354 6074 0.762 - 0.762 KIAA2026 [Source:HGNC Symbol;Acc:HGNC:23378]
34. ATRX ENSG00000085224 27422 0.762 - 0.762 ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
35. ZBTB44 ENSG00000196323 6946 0.761 - 0.761 zinc finger and BTB domain containing 44 [Source:HGNC Symbol;Acc:HGNC:25001]
36. TEAD1 ENSG00000187079 6699 0.76 - 0.760 TEA domain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:11714]
37. SLC38A2 ENSG00000134294 18805 0.759 - 0.759 solute carrier family 38 member 2 [Source:HGNC Symbol;Acc:HGNC:13448]
38. IL6ST ENSG00000134352 9416 0.759 - 0.759 interleukin 6 signal transducer [Source:HGNC Symbol;Acc:HGNC:6021]
39. ARRDC3 ENSG00000113369 19152 0.758 - 0.758 arrestin domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29263]
40. VPS13A ENSG00000197969 1547 0.758 - 0.758 vacuolar protein sorting 13 homolog A [Source:HGNC Symbol;Acc:HGNC:1908]
41. CDH2 ENSG00000170558 5035 0.755 - 0.755 cadherin 2 [Source:HGNC Symbol;Acc:HGNC:1759]
42. PTPRD ENSG00000153707, ENSG00000282932 13409 0.755 - 0.755 protein tyrosine phosphatase, receptor type D [Source:HGNC Symbol;Acc:HGNC:9668]
43. SHISA3 ENSG00000178343 7060 0.752 - 0.752 shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
44. SENP6 ENSG00000112701 6072 0.751 - 0.751 SUMO specific peptidase 6 [Source:HGNC Symbol;Acc:HGNC:20944]
45. TMEM123 ENSG00000152558 7933 0.751 - 0.751 transmembrane protein 123 [Source:HGNC Symbol;Acc:HGNC:30138]
46. ZFPM2 ENSG00000169946 826 0.75 - 0.750 zinc finger protein, FOG family member 2 [Source:HGNC Symbol;Acc:HGNC:16700]
47. MAP9 ENSG00000164114 2246 0.75 - 0.750 microtubule associated protein 9 [Source:HGNC Symbol;Acc:HGNC:26118]
48. AZIN1 ENSG00000155096 7504 0.749 - 0.749 antizyme inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:16432]
49. RBM25 ENSG00000119707 16951 0.749 - 0.749 RNA binding motif protein 25 [Source:HGNC Symbol;Acc:HGNC:23244]
50. RBM39 ENSG00000131051 20099 0.748 - 0.748 RNA binding motif protein 39 [Source:HGNC Symbol;Acc:HGNC:15923]
51. LUC7L3 ENSG00000108848 25216 0.747 - 0.747 LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]
52. CSRNP3 ENSG00000178662 2914 0.747 - 0.747 cysteine and serine rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
53. PPP3CA ENSG00000138814 2616 0.747 - 0.747 protein phosphatase 3 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9314]
54. CCAR1 ENSG00000060339 27115 0.745 - 0.745 cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
55. TSHZ3 ENSG00000121297 5861 0.744 - 0.744 teashirt zinc finger homeobox 3 [Source:HGNC Symbol;Acc:HGNC:30700]
56. UBR3 ENSG00000144357 3172 0.744 - 0.744 ubiquitin protein ligase E3 component n-recognin 3 [Source:HGNC Symbol;Acc:HGNC:30467]
57. KIF5B ENSG00000170759 16732 0.743 - 0.743 kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
58. BPTF ENSG00000171634 9128 0.742 - 0.742 bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
59. SPIN1 ENSG00000106723 7283 0.742 - 0.742 spindlin 1 [Source:HGNC Symbol;Acc:HGNC:11243]
60. TPR ENSG00000047410 2737 0.741 - 0.741 translocated promoter region, nuclear basket protein [Source:HGNC Symbol;Acc:HGNC:12017]
61. SP3 ENSG00000172845 6798 0.741 - 0.741 Sp3 transcription factor [Source:HGNC Symbol;Acc:HGNC:11208]
62. KRCC1 ENSG00000172086 2251 0.739 - 0.739 lysine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:28039]
63. JMJD1C ENSG00000171988 1966 0.739 - 0.739 jumonji domain containing 1C [Source:HGNC Symbol;Acc:HGNC:12313]
64. TNRC6B ENSG00000100354 7721 0.737 - 0.737 trinucleotide repeat containing 6B [Source:HGNC Symbol;Acc:HGNC:29190]
65. FGF9 ENSG00000102678 1149 0.737 - 0.737 fibroblast growth factor 9 [Source:HGNC Symbol;Acc:HGNC:3687]
66. PHIP ENSG00000146247 9731 0.735 - 0.735 pleckstrin homology domain interacting protein [Source:HGNC Symbol;Acc:HGNC:15673]
67. XIAP ENSG00000101966 6268 0.735 - 0.735 X-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]
68. FLRT3 ENSG00000125848 10097 0.733 - 0.733 fibronectin leucine rich transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:3762]
69. RBM27 ENSG00000091009 3201 0.733 - 0.733 RNA binding motif protein 27 [Source:HGNC Symbol;Acc:HGNC:29243]
70. C3orf58 ENSG00000181744 3754 0.732 - 0.732 chromosome 3 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:28490]
71. ZNF146 ENSG00000167635 2096 0.732 - 0.732 zinc finger protein 146 [Source:HGNC Symbol;Acc:HGNC:12931]
72. KIAA1551 ENSG00000174718 2689 0.731 - 0.731 KIAA1551 [Source:HGNC Symbol;Acc:HGNC:25559]
73. PUM2 ENSG00000055917 6323 0.73 - 0.730 pumilio RNA binding family member 2 [Source:HGNC Symbol;Acc:HGNC:14958]
74. EIF3E ENSG00000104408 18921 0.729 - 0.729 eukaryotic translation initiation factor 3 subunit E [Source:HGNC Symbol;Acc:HGNC:3277]
75. Sep-07 Sep-07 16686 0.729 - 0.729
76. TBL1XR1 ENSG00000177565 10246 0.729 - 0.729 transducin beta like 1 X-linked receptor 1 [Source:HGNC Symbol;Acc:HGNC:29529]
77. RYK ENSG00000163785 2504 0.728 - 0.728 receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10481]
78. SLITRK4 ENSG00000179542 1047 0.726 - 0.726 SLIT and NTRK like family member 4 [Source:HGNC Symbol;Acc:HGNC:23502]
79. UBE3A ENSG00000114062 9252 0.725 - 0.725 ubiquitin protein ligase E3A [Source:HGNC Symbol;Acc:HGNC:12496]
80. KCTD3 ENSG00000136636 3233 0.725 - 0.725 potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
81. USO1 ENSG00000138768 3064 0.723 - 0.723 USO1 vesicle transport factor [Source:HGNC Symbol;Acc:HGNC:30904]
82. DSG2 ENSG00000046604 4179 0.723 - 0.723 desmoglein 2 [Source:HGNC Symbol;Acc:HGNC:3049]
83. RAD50 ENSG00000113522 3743 0.723 - 0.723 RAD50 double strand break repair protein [Source:HGNC Symbol;Acc:HGNC:9816]
84. UTRN ENSG00000152818 7227 0.723 - 0.723 utrophin [Source:HGNC Symbol;Acc:HGNC:12635]
85. ETNK1 ENSG00000139163 6151 0.723 - 0.723 ethanolamine kinase 1 [Source:HGNC Symbol;Acc:HGNC:24649]
86. ARID4A ENSG00000032219 2224 0.723 - 0.723 AT-rich interaction domain 4A [Source:HGNC Symbol;Acc:HGNC:9885]
87. KLHL28 ENSG00000179454 2343 0.722 - 0.722 kelch like family member 28 [Source:HGNC Symbol;Acc:HGNC:19741]
88. NUMB ENSG00000133961 3919 0.722 - 0.722 NUMB, endocytic adaptor protein [Source:HGNC Symbol;Acc:HGNC:8060]
89. SPIN4 ENSG00000186767 2851 0.72 - 0.720 spindlin family member 4 [Source:HGNC Symbol;Acc:HGNC:27040]
90. PRKG1 ENSG00000185532 1634 0.72 - 0.720 protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
91. E2F3 ENSG00000112242 3842 0.72 - 0.720 E2F transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:3115]
92. TIA1 ENSG00000116001 14798 0.72 - 0.720 TIA1 cytotoxic granule associated RNA binding protein [Source:HGNC Symbol;Acc:HGNC:11802]
93. PRPF40A ENSG00000196504 9481 0.72 - 0.720 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
94. ZNF644 ENSG00000122482 3186 0.72 - 0.720 zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
95. MAP3K2 ENSG00000169967 2952 0.719 - 0.719 mitogen-activated protein kinase kinase kinase 2 [Source:HGNC Symbol;Acc:HGNC:6854]
96. ZFR ENSG00000056097 6491 0.719 - 0.719 zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
97. KMT2E ENSG00000005483 4281 0.719 - 0.719 lysine methyltransferase 2E [Source:HGNC Symbol;Acc:HGNC:18541]
98. PWARSN 917 0.718 0.718 - Prader Willi/Angelman region RNA, SNRPN neighbor
99. CEBPZ ENSG00000115816 4024 0.718 - 0.718 CCAAT enhancer binding protein zeta [Source:HGNC Symbol;Acc:HGNC:24218]
100. HIPK2 ENSG00000064393 7041 0.717 0.717 - homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]

There are 28 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA