Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s79.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17213.21 129032.29
2. krt4 ENSDARG00000017624, ENSDARG00000115790 17213.21 129032.29 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. ppiaa ENSDARG00000009212 8606.61 64516.18 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
4. tpma ENSDARG00000033683 8606.61 64516.18 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. COX5B_1 ENSDARG00000015978 4303.30 32258.05 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
6. CU856140.1 CU856140.1 4303.30 32258.05
7. TMEM261 TMEM261 4303.30 32258.05
8. bap1 ENSDARG00000063051 4303.30 32258.05 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) [Source:ZFIN;Acc:ZDB-GENE-050208-492]
9. cfl1 ENSDARG00000021124 4303.30 32258.05 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
10. col1a1b ENSDARG00000035809 4303.30 32258.05 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
11. col4a5 ENSDARG00000052063 4303.30 32258.05 collagen, type IV, alpha 5 (Alport syndrome) [Source:ZFIN;Acc:ZDB-GENE-030131-2281]
12. cox8a ENSDARG00000095273 4303.30 32258.05 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
13. flna ENSDARG00000074201 4303.30 32258.05 filamin A, alpha (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-030131-2145]
14. gars ENSDARG00000059070 4303.30 32258.05 glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
15. notch1b ENSDARG00000052094 4303.30 32258.05 notch 1b [Source:ZFIN;Acc:ZDB-GENE-990415-183]
16. nupr1 4303.30 32258.05 nuclear protein 1
17. prickle1b ENSDARG00000045694 4303.30 32258.05 prickle homolog 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2152]
18. pvalb4 ENSDARG00000024433 4303.30 32258.05 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
19. rpl18a ENSDARG00000025073 4303.30 32258.05 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
20. socs5a ENSDARG00000100717 4303.30 32258.05 suppressor of cytokine signaling 5a [Source:ZFIN;Acc:ZDB-GENE-061013-408]
21. thumpd3 ENSDARG00000059634, ENSDARG00000113066 4303.30 32258.05 THUMP domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9745]
22. tmed10 ENSDARG00000041391, ENSDARG00000110672 4303.30 32258.05 transmembrane p24 trafficking protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-4915]
23. ube2ka ENSDARG00000089055 4303.30 32258.05 ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-050320-48]
24. 5S_rRNA 5S_rRNA 0.00 0.00
25. 5S_rRNA_1 5S_rRNA_1 0.00 0.00
26. 5S_rRNA_10 5S_rRNA_10 0.00 0.00
27. 5S_rRNA_11 5S_rRNA_11 0.00 0.00
28. 5S_rRNA_12 5S_rRNA_12 0.00 0.00
29. 5S_rRNA_13 5S_rRNA_13 0.00 0.00
30. 5S_rRNA_14 5S_rRNA_14 0.00 0.00
31. 5S_rRNA_15 5S_rRNA_15 0.00 0.00
32. 5S_rRNA_16 5S_rRNA_16 0.00 0.00
33. 5S_rRNA_17 5S_rRNA_17 0.00 0.00
34. 5S_rRNA_18 5S_rRNA_18 0.00 0.00
35. 5S_rRNA_19 5S_rRNA_19 0.00 0.00
36. 5S_rRNA_2 5S_rRNA_2 0.00 0.00
37. 5S_rRNA_20 5S_rRNA_20 0.00 0.00
38. 5S_rRNA_21 5S_rRNA_21 0.00 0.00
39. 5S_rRNA_22 5S_rRNA_22 0.00 0.00
40. 5S_rRNA_23 5S_rRNA_23 0.00 0.00
41. 5S_rRNA_24 5S_rRNA_24 0.00 0.00
42. 5S_rRNA_25 5S_rRNA_25 0.00 0.00
43. 5S_rRNA_26 5S_rRNA_26 0.00 0.00
44. 5S_rRNA_27 5S_rRNA_27 0.00 0.00
45. 5S_rRNA_28 5S_rRNA_28 0.00 0.00
46. 5S_rRNA_29 5S_rRNA_29 0.00 0.00
47. 5S_rRNA_3 5S_rRNA_3 0.00 0.00
48. 5S_rRNA_30 5S_rRNA_30 0.00 0.00
49. 5S_rRNA_31 5S_rRNA_31 0.00 0.00
50. 5S_rRNA_4 5S_rRNA_4 0.00 0.00
51. 5S_rRNA_5 5S_rRNA_5 0.00 0.00
52. 5S_rRNA_6 5S_rRNA_6 0.00 0.00
53. 5S_rRNA_7 5S_rRNA_7 0.00 0.00
54. 5S_rRNA_8 5S_rRNA_8 0.00 0.00
55. 5S_rRNA_9 5S_rRNA_9 0.00 0.00
56. 5_8S_rRNA 5_8S_rRNA 0.00 0.00
57. 5_8S_rRNA_1 5_8S_rRNA_1 0.00 0.00
58. 5_8S_rRNA_2 5_8S_rRNA_2 0.00 0.00
59. 5_8S_rRNA_3 5_8S_rRNA_3 0.00 0.00
60. 5_8S_rRNA_4 5_8S_rRNA_4 0.00 0.00
61. 5_8S_rRNA_5 5_8S_rRNA_5 0.00 0.00
62. AADAT ENSDARG00000011410 0.00 0.00 aminoadipate aminotransferase [Source:ZFIN;Acc:ZDB-GENE-111229-1]
63. AAED1 ENSDARG00000075299 0.00 0.00 AhpC/TSA antioxidant enzyme domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110914-194]
64. AAK1 AAK1 0.00 0.00
65. ABCA7 ABCA7 0.00 0.00
66. ABCC1 ENSDARG00000104719 0.00 0.00 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-15]
67. ABCC10 ENSDARG00000077988, ENSDARG00000111885, ENSDARG00000113210 0.00 0.00 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 [Source:ZFIN;Acc:ZDB-GENE-050517-24]
68. ABCC3 ENSDARG00000096662 0.00 0.00 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 [Source:ZFIN;Acc:ZDB-GENE-050517-16]
69. ABCC6 ABCC6 0.00 0.00
70. ABCC6_1 ABCC6_1 0.00 0.00
71. ABCD2 ENSDARG00000059409 0.00 0.00 ATP-binding cassette, sub-family D (ALD), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-28]
72. ABCD2_1 ABCD2_1 0.00 0.00
73. ABCF3 ENSDARG00000089705 0.00 0.00 ATP-binding cassette, sub-family F (GCN20), member 3 [Source:ZFIN;Acc:ZDB-GENE-050517-32]
74. ABHD12B ABHD12B 0.00 0.00
75. ABHD12B_1 ABHD12B_1 0.00 0.00
76. ABHD15 ABHD15 0.00 0.00
77. ABHD17A ABHD17A 0.00 0.00
78. ABHD17A_1 ABHD17A_1 0.00 0.00
79. ABI3 ABI3 0.00 0.00
80. ABI3BP 0.00 0.00 ABI family member 3 binding protein, transcript variant X3
81. ABI3_1 ABI3_1 0.00 0.00
82. ABR ENSDARG00000095180 0.00 0.00 ABR, RhoGEF and GTPase activating protein [Source:ZFIN;Acc:ZDB-GENE-070705-146]
83. ABR_1 ABR_1 0.00 0.00
84. ABTB1 ENSDARG00000063354 0.00 0.00 ankyrin repeat and BTB (POZ) domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-141212-241]
85. ABTB2 ABTB2 0.00 0.00
86. AC024175.11 AC024175.11 0.00 0.00
87. AC024175.17 AC024175.17 0.00 0.00
88. AC024175.21 AC024175.21 0.00 0.00
89. AC024175.9 AC024175.9 0.00 0.00
90. ACAP2 ENSDARG00000060783 0.00 0.00 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 [Source:ZFIN;Acc:ZDB-GENE-050208-640]
91. ACAP3 ACAP3 0.00 0.00
92. ACBD3 ENSDARG00000042623 0.00 0.00 acyl-Coenzyme A binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1930]
93. ACER2 ENSDARG00000077782 0.00 0.00 alkaline ceramidase 2 [Source:ZFIN;Acc:ZDB-GENE-121026-1]
94. ACKR3 ACKR3 0.00 0.00
95. ACOT12 ENSDARG00000054534 0.00 0.00 acyl-CoA thioesterase 12 [Source:HGNC Symbol;Acc:HGNC:24436]
96. ACP2 ENSDARG00000007244 0.00 0.00 acid phosphatase 2, lysosomal [Source:ZFIN;Acc:ZDB-GENE-050306-40]
97. ACSL1 ACSL1 0.00 0.00
98. ACSL6 0.00 0.00 acyl-CoA synthetase long-chain family member 6
99. ACTL7B ACTL7B 0.00 0.00
100. ACTN2 ACTN2 0.00 0.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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