Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s78.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8606.61 64516.34
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3765.39 28225.88 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mylz3 ENSDARG00000017441 2151.65 16129.07 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
4. tmsb4x ENSDARG00000077777 2151.65 16129.07 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. ckma ENSDARG00000035327, ENSDARG00000114671 1613.74 12096.82 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. mt-nd4 ENSDARG00000063917 1613.74 12096.82 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. myl1 ENSDARG00000014196 1613.74 12096.82 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
8. rpl23 ENSDARG00000053457 1613.74 12096.82 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
9. acta1b ENSDARG00000055618 1075.83 8064.57 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
10. apoc1l apoc1l 1075.83 8064.57
11. atp2a1 ENSDARG00000020574 1075.83 8064.57 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. btf3 ENSDARG00000035400, ENSDARG00000116462 1075.83 8064.57 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
13. ckmb ENSDARG00000040565 1075.83 8064.57 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
14. col1a1a ENSDARG00000012405, ENSDARG00000116113 1075.83 8064.57 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
15. dbi ENSDARG00000026369 1075.83 8064.57 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
16. eef1a1l1 ENSDARG00000020850 1075.83 8064.57 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. fkbp1aa ENSDARG00000022684 1075.83 8064.57 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
18. gnb2l1 1075.83 8064.57 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 1075.83 8064.57 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. mt-atp6 ENSDARG00000063911 1075.83 8064.57 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. mt-co3 ENSDARG00000063912 1075.83 8064.57 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. mt-nd2 ENSDARG00000063899 1075.83 8064.57 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. ppp2r2a ppp2r2a 1075.83 8064.57
24. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1075.83 8064.57 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
25. rplp1 ENSDARG00000021864 1075.83 8064.57 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
26. shfm1 1075.83 8064.57 split hand/foot malformation (ectrodactyly) type 1
27. si:dkeyp-113d7.4 si:dkeyp-113d7.4 1075.83 8064.57
28. zgc:113413 zgc:113413 1075.83 8064.57
29. zgc:153867 1075.83 8064.57 zgc:153867, transcript variant X2
30. AL954137.2 ENSDARG00000114408 537.91 4032.25
31. AP3B1 537.91 4032.25 adaptor related protein complex 3 beta 1 subunit
32. ARSJ ENSDARG00000077590 537.91 4032.25 arylsulfatase family, member J [Source:ZFIN;Acc:ZDB-GENE-111215-1]
33. BX539313.4 BX539313.4 537.91 4032.25
34. C22H19orf70 C22H19orf70 537.91 4032.25
35. CABZ01049362.1 ENSDARG00000099508 537.91 4032.25
36. CABZ01074130.1 ENSDARG00000105274 537.91 4032.25
37. CBFA2T3 ENSDARG00000079012 537.91 4032.25 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
38. CD99L2 ENSDARG00000056722 537.91 4032.25 CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
39. CDCA4 ENSDARG00000042319 537.91 4032.25 cell division cycle associated 4 [Source:ZFIN;Acc:ZDB-GENE-030131-1695]
40. CU929052.1 CU929052.1 537.91 4032.25
41. ISCU ISCU 537.91 4032.25
42. MRPL21 ENSDARG00000003846 537.91 4032.25 mitochondrial ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-061027-183]
43. NDUFC2 ENSDARG00000102115 537.91 4032.25 NADH:ubiquinone oxidoreductase subunit C2 [Source:ZFIN;Acc:ZDB-GENE-050320-87]
44. NRAP ENSDARG00000009341 537.91 4032.25 nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
45. RNF145 RNF145 537.91 4032.25
46. RNF38 ENSDARG00000062055 537.91 4032.25 ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
47. RUNDC1 ENSDARG00000091962 537.91 4032.25 RUN domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25418]
48. U2_6 U2_6 537.91 4032.25
49. acap3a ENSDARG00000075990 537.91 4032.25 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3a [Source:ZFIN;Acc:ZDB-GENE-030131-1711]
50. acin1a ENSDARG00000054290 537.91 4032.25 apoptotic chromatin condensation inducer 1a [Source:ZFIN;Acc:ZDB-GENE-030616-583]
51. acss2 ENSDARG00000037781, ENSDARG00000112371 537.91 4032.25 acyl-CoA synthetase short chain family member 2 [Source:ZFIN;Acc:ZDB-GENE-040718-388]
52. acta1a ENSDARG00000036371 537.91 4032.25 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
53. actb1 ENSDARG00000037746, ENSDARG00000113649 537.91 4032.25 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
54. actn3a ENSDARG00000013755, ENSDARG00000111128 537.91 4032.25 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
55. ap1s2 ENSDARG00000058504, ENSDARG00000114515 537.91 4032.25 adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
56. api5 ENSDARG00000033597 537.91 4032.25 apoptosis inhibitor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-395]
57. apoeb ENSDARG00000040295 537.91 4032.25 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
58. aqp3a ENSDARG00000003808 537.91 4032.25 aquaporin 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2826]
59. arpc3 ENSDARG00000057882 537.91 4032.25 actin related protein 2/3 complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040625-107]
60. atp5d 537.91 4032.25 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
61. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 537.91 4032.25 alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
62. caspb ENSDARG00000052039 537.91 4032.25 caspase b [Source:ZFIN;Acc:ZDB-GENE-020812-1]
63. ccm2 ENSDARG00000013705 537.91 4032.25 CCM2 scaffold protein [Source:ZFIN;Acc:ZDB-GENE-040712-6]
64. ccne2 ENSDARG00000098529 537.91 4032.25 cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
65. cdca8 ENSDARG00000043137 537.91 4032.25 cell division cycle associated 8 [Source:ZFIN;Acc:ZDB-GENE-041114-171]
66. celf2 ENSDARG00000002131, ENSDARG00000110267 537.91 4032.25 cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
67. cers2b ENSDARG00000058992 537.91 4032.25 ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
68. clpp ENSDARG00000020679 537.91 4032.25 caseinolytic mitochondrial matrix peptidase proteolytic subunit [Source:ZFIN;Acc:ZDB-GENE-030131-7860]
69. cox6b2 ENSDARG00000037860 537.91 4032.25 cytochrome c oxidase subunit 6B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1566]
70. cpda ENSDARG00000055648, ENSDARG00000110375, ENSDARG00000115395 537.91 4032.25 carboxypeptidase D, a [Source:ZFIN;Acc:ZDB-GENE-081112-2]
71. cryba2b ENSDARG00000041925 537.91 4032.25 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
72. crybb1 ENSDARG00000068507 537.91 4032.25 crystallin, beta B1 [Source:ZFIN;Acc:ZDB-GENE-010813-1]
73. crygm2d13 ENSDARG00000057460 537.91 4032.25 crystallin, gamma M2d13 [Source:ZFIN;Acc:ZDB-GENE-040718-105]
74. csnk1g2b ENSDARG00000034056, ENSDARG00000114050 537.91 4032.25 casein kinase 1, gamma 2b [Source:ZFIN;Acc:ZDB-GENE-060825-285]
75. ctsba ENSDARG00000055120 537.91 4032.25 cathepsin Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2650]
76. cxcl14 ENSDARG00000056627, ENSDARG00000113190 537.91 4032.25 chemokine (C-X-C motif) ligand 14 [Source:ZFIN;Acc:ZDB-GENE-000619-1]
77. dbx1a ENSDARG00000086393 537.91 4032.25 developing brain homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-000128-8]
78. dctn5 ENSDARG00000003573 537.91 4032.25 dynactin 5 [Source:ZFIN;Acc:ZDB-GENE-040718-201]
79. desma ENSDARG00000058656 537.91 4032.25 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
80. dis3l2 ENSDARG00000033259 537.91 4032.25 DIS3 like 3'-5' exoribonuclease 2 [Source:ZFIN;Acc:ZDB-GENE-070705-171]
81. dnmt1 ENSDARG00000030756 537.91 4032.25 DNA (cytosine-5-)-methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-990714-15]
82. dtnba ENSDARG00000077694 537.91 4032.25 dystrobrevin, beta a [Source:ZFIN;Acc:ZDB-GENE-030131-3967]
83. eef2b ENSDARG00000100371, ENSDARG00000109247 537.91 4032.25 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
84. efr3bb 537.91 4032.25 EFR3 homolog Bb (S. cerevisiae), transcript variant X2
85. eif1axb ENSDARG00000057912, ENSDARG00000111310 537.91 4032.25 eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
86. eif2s1b ENSDARG00000052178 537.91 4032.25 eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
87. eif2s3 ENSDARG00000008292 537.91 4032.25 eukaryotic translation initiation factor 2, subunit 3 gamma [Source:ZFIN;Acc:ZDB-GENE-030131-5552]
88. eif5a ENSDARG00000017235 537.91 4032.25 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
89. fabp3 ENSDARG00000023290 537.91 4032.25 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
90. fam49a ENSDARG00000006672 537.91 4032.25 family with sequence similarity 49, member A [Source:ZFIN;Acc:ZDB-GENE-031002-50]
91. fam96b 537.91 4032.25 family with sequence similarity 96, member B
92. fbxo11a_1 ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 537.91 4032.25 F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
93. fth1a ENSDARG00000015551 537.91 4032.25 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
94. gapdh ENSDARG00000043457 537.91 4032.25 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
95. gatm ENSDARG00000036239 537.91 4032.25 glycine amidinotransferase (L-arginine:glycine amidinotransferase) [Source:ZFIN;Acc:ZDB-GENE-021015-1]
96. grin1a ENSDARG00000027828 537.91 4032.25 glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
97. h3f3a 537.91 4032.25 H3 histone, family 3A, transcript variant X1
98. hbae1_1 537.91 4032.25 hemoglobin, alpha embryonic 1
99. hbbe1.1 ENSDARG00000113599 537.91 4032.25 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
100. hbbe3 ENSDARG00000038147, ENSDARG00000109344 537.91 4032.25 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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