Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s77.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 7021.18 52631.64
2. BX511252.1 BX511252.1 7021.18 52631.64
3. krt4 ENSDARG00000017624, ENSDARG00000115790 4680.79 35087.78 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-co2 ENSDARG00000063908 4680.79 35087.78 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. BX000999.2 BX000999.2 2340.39 17543.85
6. DST ENSDARG00000101858 2340.39 17543.85 dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
7. KLF16 KLF16 2340.39 17543.85
8. NDUFB2 ENSDARG00000045490 2340.39 17543.85 NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 2340.39 17543.85 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. actc1b ENSDARG00000099197 2340.39 17543.85 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. apoc1l apoc1l 2340.39 17543.85
12. cct2 ENSDARG00000087206, ENSDARG00000104674 2340.39 17543.85 chaperonin containing TCP1, subunit 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-020419-6]
13. ctnnb1 ENSDARG00000014571 2340.39 17543.85 catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
14. ddx5 ENSDARG00000038068 2340.39 17543.85 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
15. eif5a2 ENSDARG00000056186 2340.39 17543.85 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
16. ep300b ENSDARG00000061108 2340.39 17543.85 E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
17. fbxo11a_1 ENSDARG00000061631, ENSDARG00000102294, ENSDARG00000112746 2340.39 17543.85 F-box protein 11a [Source:ZFIN;Acc:ZDB-GENE-061103-70]
18. fus ENSDARG00000037968, ENSDARG00000113554, ENSDARG00000114284 2340.39 17543.85 FUS RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-040426-1010]
19. hbae1 2340.39 17543.85 hemoglobin, alpha embryonic 1
20. hmga1a ENSDARG00000028335 2340.39 17543.85 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
21. huwe1 ENSDARG00000016782 2340.39 17543.85 HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
22. id1 ENSDARG00000040764 2340.39 17543.85 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
23. irf5 ENSDARG00000045681 2340.39 17543.85 interferon regulatory factor 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2587]
24. krt18 ENSDARG00000018404, ENSDARG00000109528 2340.39 17543.85 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
25. lect1 2340.39 17543.85 leukocyte cell derived chemotaxin 1, transcript variant X1
26. mapk6 ENSDARG00000032103 2340.39 17543.85 mitogen-activated protein kinase 6 [Source:ZFIN;Acc:ZDB-GENE-050420-7]
27. mt-atp6 ENSDARG00000063911 2340.39 17543.85 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
28. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 2340.39 17543.85 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
29. mylz3 ENSDARG00000017441 2340.39 17543.85 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
30. onecut1 ENSDARG00000007982, ENSDARG00000112251 2340.39 17543.85 one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
31. osgn1 ENSDARG00000052279 2340.39 17543.85 oxidative stress induced growth inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-864]
32. pip5k1bb ENSDARG00000006508 2340.39 17543.85 phosphatidylinositol-4-phosphate 5-kinase, type I, beta b [Source:ZFIN;Acc:ZDB-GENE-040912-141]
33. ppib ENSDARG00000092798 2340.39 17543.85 peptidylprolyl isomerase B (cyclophilin B) [Source:ZFIN;Acc:ZDB-GENE-040426-1955]
34. ptmaa ENSDARG00000021113, ENSDARG00000110479 2340.39 17543.85 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
35. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2340.39 17543.85 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
36. rpl11 ENSDARG00000043509 2340.39 17543.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
37. rpl17 ENSDARG00000057556 2340.39 17543.85 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
38. rpl26 ENSDARG00000102317 2340.39 17543.85 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. rps12 ENSDARG00000036875, ENSDARG00000115157 2340.39 17543.85 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
40. rps14 ENSDARG00000036629 2340.39 17543.85 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
41. rps20 ENSDARG00000036044 2340.39 17543.85 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
42. rps23 ENSDARG00000021838 2340.39 17543.85 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
43. rps26l ENSDARG00000030408 2340.39 17543.85 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
44. slc40a1 ENSDARG00000000241 2340.39 17543.85 solute carrier family 40 (iron-regulated transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-000511-8]
45. srsf3a ENSDARG00000025397, ENSDARG00000100815 2340.39 17543.85 serine/arginine-rich splicing factor 3a [Source:ZFIN;Acc:ZDB-GENE-030616-631]
46. tardbp ENSDARG00000040031, ENSDARG00000115667 2340.39 17543.85 TAR DNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-3777]
47. tmsb4x ENSDARG00000077777 2340.39 17543.85 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
48. tnnc2 ENSDARG00000070835, ENSDARG00000111155 2340.39 17543.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
49. vbp1 ENSDARG00000030241 2340.39 17543.85 von Hippel-Lindau binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050522-494]
50. zgc:101000 zgc:101000 2340.39 17543.85
51. zgc:123194 zgc:123194 2340.39 17543.85
52. 5S_rRNA 5S_rRNA 0.00 0.00
53. 5S_rRNA_1 5S_rRNA_1 0.00 0.00
54. 5S_rRNA_10 5S_rRNA_10 0.00 0.00
55. 5S_rRNA_11 5S_rRNA_11 0.00 0.00
56. 5S_rRNA_12 5S_rRNA_12 0.00 0.00
57. 5S_rRNA_13 5S_rRNA_13 0.00 0.00
58. 5S_rRNA_14 5S_rRNA_14 0.00 0.00
59. 5S_rRNA_15 5S_rRNA_15 0.00 0.00
60. 5S_rRNA_16 5S_rRNA_16 0.00 0.00
61. 5S_rRNA_17 5S_rRNA_17 0.00 0.00
62. 5S_rRNA_18 5S_rRNA_18 0.00 0.00
63. 5S_rRNA_19 5S_rRNA_19 0.00 0.00
64. 5S_rRNA_2 5S_rRNA_2 0.00 0.00
65. 5S_rRNA_20 5S_rRNA_20 0.00 0.00
66. 5S_rRNA_21 5S_rRNA_21 0.00 0.00
67. 5S_rRNA_22 5S_rRNA_22 0.00 0.00
68. 5S_rRNA_23 5S_rRNA_23 0.00 0.00
69. 5S_rRNA_24 5S_rRNA_24 0.00 0.00
70. 5S_rRNA_25 5S_rRNA_25 0.00 0.00
71. 5S_rRNA_26 5S_rRNA_26 0.00 0.00
72. 5S_rRNA_27 5S_rRNA_27 0.00 0.00
73. 5S_rRNA_28 5S_rRNA_28 0.00 0.00
74. 5S_rRNA_29 5S_rRNA_29 0.00 0.00
75. 5S_rRNA_3 5S_rRNA_3 0.00 0.00
76. 5S_rRNA_30 5S_rRNA_30 0.00 0.00
77. 5S_rRNA_31 5S_rRNA_31 0.00 0.00
78. 5S_rRNA_4 5S_rRNA_4 0.00 0.00
79. 5S_rRNA_5 5S_rRNA_5 0.00 0.00
80. 5S_rRNA_6 5S_rRNA_6 0.00 0.00
81. 5S_rRNA_7 5S_rRNA_7 0.00 0.00
82. 5S_rRNA_8 5S_rRNA_8 0.00 0.00
83. 5S_rRNA_9 5S_rRNA_9 0.00 0.00
84. 5_8S_rRNA 5_8S_rRNA 0.00 0.00
85. 5_8S_rRNA_1 5_8S_rRNA_1 0.00 0.00
86. 5_8S_rRNA_2 5_8S_rRNA_2 0.00 0.00
87. 5_8S_rRNA_3 5_8S_rRNA_3 0.00 0.00
88. 5_8S_rRNA_4 5_8S_rRNA_4 0.00 0.00
89. 5_8S_rRNA_5 5_8S_rRNA_5 0.00 0.00
90. AADAT ENSDARG00000011410 0.00 0.00 aminoadipate aminotransferase [Source:ZFIN;Acc:ZDB-GENE-111229-1]
91. AAED1 ENSDARG00000075299 0.00 0.00 AhpC/TSA antioxidant enzyme domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110914-194]
92. AAK1 AAK1 0.00 0.00
93. ABCA7 ABCA7 0.00 0.00
94. ABCC1 ENSDARG00000104719 0.00 0.00 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-15]
95. ABCC10 ENSDARG00000077988, ENSDARG00000111885, ENSDARG00000113210 0.00 0.00 ATP-binding cassette, sub-family C (CFTR/MRP), member 10 [Source:ZFIN;Acc:ZDB-GENE-050517-24]
96. ABCC3 ENSDARG00000096662 0.00 0.00 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 [Source:ZFIN;Acc:ZDB-GENE-050517-16]
97. ABCC6 ABCC6 0.00 0.00
98. ABCC6_1 ABCC6_1 0.00 0.00
99. ABCD2 ENSDARG00000059409 0.00 0.00 ATP-binding cassette, sub-family D (ALD), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-28]
100. ABCD2_1 ABCD2_1 0.00 0.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA