Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s75.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6625.95 49668.87
2. ckmb ENSDARG00000040565 2208.65 16556.29 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
3. eef1a1l1 ENSDARG00000020850 2208.65 16556.29 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
4. tmsb4x ENSDARG00000077777 2208.65 16556.29 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. tpma ENSDARG00000033683 2208.65 16556.29 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. hmga1a ENSDARG00000028335 1766.92 13245.03 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
7. mt-nd4 ENSDARG00000063917 1766.92 13245.03 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. rpl11 ENSDARG00000043509 1766.92 13245.03 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
9. rpl18a ENSDARG00000025073 1766.92 13245.03 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
10. si:dkey-151g10.6 si:dkey-151g10.6 1766.92 13245.03
11. krt4 ENSDARG00000017624, ENSDARG00000115790 1325.19 9933.77 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
12. mt-atp6 ENSDARG00000063911 1325.19 9933.77 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-co2 ENSDARG00000063908 1325.19 9933.77 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. mt-co3 ENSDARG00000063912 1325.19 9933.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. ptmab ENSDARG00000101766 1325.19 9933.77 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. rpl26 ENSDARG00000102317 1325.19 9933.77 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
17. snx27b ENSDARG00000016977 1325.19 9933.77 sorting nexin family member 27b [Source:ZFIN;Acc:ZDB-GENE-040426-1529]
18. tnnt3b ENSDARG00000068457 1325.19 9933.77 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
19. tpm3 ENSDARG00000005162 1325.19 9933.77 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
20. ywhabl ENSDARG00000040287 1325.19 9933.77 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
21. AC024175.17 AC024175.17 883.46 6622.52
22. RPL37A RPL37A 883.46 6622.52
23. WIZ WIZ 883.46 6622.52
24. actb2 ENSDARG00000037870 883.46 6622.52 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
25. actc1b ENSDARG00000099197 883.46 6622.52 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
26. and1 ENSDARG00000088514 883.46 6622.52 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
27. apoc1l apoc1l 883.46 6622.52
28. ckma ENSDARG00000035327, ENSDARG00000114671 883.46 6622.52 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
29. col1a1a ENSDARG00000012405, ENSDARG00000116113 883.46 6622.52 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
30. col1a1b ENSDARG00000035809 883.46 6622.52 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
31. cyt1l ENSDARG00000036832 883.46 6622.52 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
32. mt-nd1 ENSDARG00000063895 883.46 6622.52 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. mt-nd2 ENSDARG00000063899 883.46 6622.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
34. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 883.46 6622.52 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
35. mylz3 ENSDARG00000017441 883.46 6622.52 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
36. ppargc1b ENSDARG00000101569 883.46 6622.52 peroxisome proliferator-activated receptor gamma, coactivator 1 beta [Source:ZFIN;Acc:ZDB-GENE-030616-43]
37. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 883.46 6622.52 proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
38. rpl21 ENSDARG00000010516, ENSDARG00000110263 883.46 6622.52 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
39. rpl23a ENSDARG00000006316 883.46 6622.52 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
40. rps15 ENSDARG00000070849, ENSDARG00000110979 883.46 6622.52 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
41. zgc:158409 zgc:158409 883.46 6622.52
42. AL954137.2 ENSDARG00000114408 441.73 3311.26
43. APOB APOB 441.73 3311.26
44. BAX BAX 441.73 3311.26
45. BCL6B ENSDARG00000069335 441.73 3311.26 B-cell CLL/lymphoma 6, member B [Source:ZFIN;Acc:ZDB-GENE-120907-1]
46. C19H6orf62 C19H6orf62 441.73 3311.26
47. C25H12orf73 C25H12orf73 441.73 3311.26
48. CABZ01044814.2 CABZ01044814.2 441.73 3311.26
49. CABZ01074130.1 ENSDARG00000105274 441.73 3311.26
50. CABZ01080492.1 CABZ01080492.1 441.73 3311.26
51. CC2D1A 441.73 3311.26 coiled-coil and C2 domain containing 1A, transcript variant X2
52. COLGALT1 ENSDARG00000073974 441.73 3311.26 collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
53. CYHR1 ENSDARG00000061057 441.73 3311.26 cysteine/histidine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-060929-720]
54. G3BP2 ENSDARG00000014790 441.73 3311.26 GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
55. GTF3C1 GTF3C1 441.73 3311.26
56. LIMD2 ENSDARG00000078092 441.73 3311.26 LIM domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120906-1]
57. MAST2 ENSDARG00000074311, ENSDARG00000109372 441.73 3311.26 microtubule associated serine/threonine kinase 2 [Source:ZFIN;Acc:ZDB-GENE-050309-150]
58. NAT16 ENSDARG00000086222 441.73 3311.26 N-acetyltransferase 16 [Source:ZFIN;Acc:ZDB-GENE-030219-43]
59. NDUFA3 ENSDARG00000041400 441.73 3311.26 NADH:ubiquinone oxidoreductase subunit A3 [Source:ZFIN;Acc:ZDB-GENE-040801-18]
60. PRKAR2B ENSDARG00000036446 441.73 3311.26 protein kinase cAMP-dependent type II regulatory subunit beta [Source:HGNC Symbol;Acc:HGNC:9392]
61. SNAP23_1 SNAP23_1 441.73 3311.26
62. TNRC6C_2 TNRC6C_2 441.73 3311.26
63. TTF1_5 TTF1_5 441.73 3311.26
64. UBE2QL1 ENSDARG00000079276 441.73 3311.26 ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
65. ZC3H4 ENSDARG00000078355 441.73 3311.26 zinc finger CCCH-type containing 4 [Source:ZFIN;Acc:ZDB-GENE-100330-1]
66. ZNF337_25 ZNF337_25 441.73 3311.26
67. abcf2a ENSDARG00000038785 441.73 3311.26 ATP-binding cassette, sub-family F (GCN20), member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-8714]
68. actb1 ENSDARG00000037746, ENSDARG00000113649 441.73 3311.26 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
69. actn3b ENSDARG00000001431 441.73 3311.26 actinin alpha 3b [Source:ZFIN;Acc:ZDB-GENE-030131-2040]
70. ahcy ENSDARG00000005191 441.73 3311.26 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
71. aldoaa ENSDARG00000011665 441.73 3311.26 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
72. anp32b ENSDARG00000023330 441.73 3311.26 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
73. apoa1a ENSDARG00000012076, ENSDARG00000110395 441.73 3311.26 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
74. apoc2 ENSDARG00000092155 441.73 3311.26 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
75. arid2 ENSDARG00000007413 441.73 3311.26 AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
76. atp1a3a ENSDARG00000018259 441.73 3311.26 ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
77. atp1b1a ENSDARG00000013144 441.73 3311.26 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
78. atp2a1 ENSDARG00000020574 441.73 3311.26 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
79. atp5g3b 441.73 3311.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
80. atp6v1ba ENSDARG00000013443, ENSDARG00000111525 441.73 3311.26 ATPase, H+ transporting, lysosomal, V1 subunit B, member a [Source:ZFIN;Acc:ZDB-GENE-030711-3]
81. c3a c3a 441.73 3311.26
82. cacna1sb ENSDARG00000042552 441.73 3311.26 calcium channel, voltage-dependent, L type, alpha 1S subunit, b [Source:ZFIN;Acc:ZDB-GENE-051227-1]
83. cand1 ENSDARG00000017841 441.73 3311.26 cullin-associated and neddylation-dissociated 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2872]
84. cap1 ENSDARG00000016350 441.73 3311.26 CAP, adenylate cyclase-associated protein 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-6459]
85. carhsp1 ENSDARG00000053129 441.73 3311.26 calcium regulated heat stable protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1479]
86. cd82a ENSDARG00000019098 441.73 3311.26 CD82 molecule a [Source:ZFIN;Acc:ZDB-GENE-030131-2818]
87. celf4 ENSDARG00000070045 441.73 3311.26 CUGBP, Elav-like family member 4 [Source:ZFIN;Acc:ZDB-GENE-040718-300]
88. cfl1l ENSDARG00000012972 441.73 3311.26 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
89. cicb ENSDARG00000055502 441.73 3311.26 capicua transcriptional repressor b [Source:ZFIN;Acc:ZDB-GENE-030131-1966]
90. cirbp cirbp 441.73 3311.26
91. clasrp ENSDARG00000061742, ENSDARG00000116329 441.73 3311.26 CLK4-associating serine/arginine rich protein [Source:ZFIN;Acc:ZDB-GENE-060503-837]
92. cnn3b ENSDARG00000029856 441.73 3311.26 calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
93. col4a1 ENSDARG00000055009 441.73 3311.26 collagen, type IV, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081105-114]
94. cryba2b ENSDARG00000041925 441.73 3311.26 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
95. csrp2bp 441.73 3311.26 csrp2 binding protein
96. dbn1 ENSDARG00000069113 441.73 3311.26 drebrin 1 [Source:ZFIN;Acc:ZDB-GENE-091204-284]
97. dcaf6 ENSDARG00000078311 441.73 3311.26 ddb1 and cul4 associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-090206-2]
98. eef2b ENSDARG00000100371, ENSDARG00000109247 441.73 3311.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
99. eif1b ENSDARG00000012688 441.73 3311.26 eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
100. eif5a ENSDARG00000017235 441.73 3311.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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