Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s73.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6309.57 47297.19
2. ckmb ENSDARG00000040565 2704.10 20270.22 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 2704.10 20270.22 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-cyb ENSDARG00000063924 2704.10 20270.22 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
5. actb2 ENSDARG00000037870 1802.73 13513.45 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. actc1b ENSDARG00000099197 1802.73 13513.45 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
7. eef1a1l1 ENSDARG00000020850 1802.73 13513.45 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. mt-co2 ENSDARG00000063908 1802.73 13513.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-co3 ENSDARG00000063912 1802.73 13513.45 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. ppiaa ENSDARG00000009212 1802.73 13513.45 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. pvalb1 ENSDARG00000037789 1802.73 13513.45 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
12. zgc:123194 zgc:123194 1802.73 13513.45
13. AGAP1 ENSDARG00000062123, ENSDARG00000113863 901.37 6756.76 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Source:ZFIN;Acc:ZDB-GENE-130405-1]
14. BAD BAD 901.37 6756.76
15. C13H9orf72 C13H9orf72 901.37 6756.76
16. G3BP2 ENSDARG00000014790 901.37 6756.76 GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
17. MRPL52 ENSDARG00000090568 901.37 6756.76 mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
18. acin1b ENSDARG00000026842 901.37 6756.76 apoptotic chromatin condensation inducer 1b [Source:ZFIN;Acc:ZDB-GENE-030826-12]
19. agrn ENSDARG00000079388, ENSDARG00000110127 901.37 6756.76 agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
20. alyref ENSDARG00000077732 901.37 6756.76 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
21. amotl2a ENSDARG00000061923 901.37 6756.76 angiomotin like 2a [Source:ZFIN;Acc:ZDB-GENE-030131-9770]
22. apobb apobb 901.37 6756.76
23. aqp1a.1 ENSDARG00000023713 901.37 6756.76 aquaporin 1a (Colton blood group), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7764]
24. arpc2 ENSDARG00000075989 901.37 6756.76 actin related protein 2/3 complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5276]
25. atp13a atp13a 901.37 6756.76
26. atp6v1g1 ENSDARG00000022315, ENSDARG00000110951 901.37 6756.76 ATPase H+ transporting V1 subunit G1 [Source:ZFIN;Acc:ZDB-GENE-030131-6965]
27. bhmt ENSDARG00000013430 901.37 6756.76 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
28. btf3 ENSDARG00000035400, ENSDARG00000116462 901.37 6756.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
29. capn9 ENSDARG00000012341 901.37 6756.76 calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
30. ccnd1 ENSDARG00000101637 901.37 6756.76 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
31. cct6a ENSDARG00000021252 901.37 6756.76 chaperonin containing TCP1, subunit 6A (zeta 1) [Source:ZFIN;Acc:ZDB-GENE-011018-2]
32. cnn2 ENSDARG00000035858 901.37 6756.76 calponin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-542]
33. col12a1b ENSDARG00000019601 901.37 6756.76 collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
34. col1a1a ENSDARG00000012405, ENSDARG00000116113 901.37 6756.76 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
35. col1a2 ENSDARG00000020007 901.37 6756.76 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
36. col2a1a ENSDARG00000069093, ENSDARG00000111202 901.37 6756.76 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
37. cryba2b ENSDARG00000041925 901.37 6756.76 crystallin, beta A2b [Source:ZFIN;Acc:ZDB-GENE-040718-324]
38. cst3 ENSDARG00000007795 901.37 6756.76 cystatin C (amyloid angiopathy and cerebral hemorrhage) [Source:ZFIN;Acc:ZDB-GENE-030131-373]
39. cxcr7b cxcr7b 901.37 6756.76
40. dbi ENSDARG00000026369 901.37 6756.76 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:ZFIN;Acc:ZDB-GENE-040426-1861]
41. dcaf15 ENSDARG00000077790 901.37 6756.76 DDB1 and CUL4 associated factor 15 [Source:ZFIN;Acc:ZDB-GENE-030131-2374]
42. dhx8 ENSDARG00000054707 901.37 6756.76 DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-050809-39]
43. eef1g ENSDARG00000056119 901.37 6756.76 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
44. eef2b ENSDARG00000100371, ENSDARG00000109247 901.37 6756.76 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
45. eif3c ENSDARG00000016443 901.37 6756.76 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
46. elavl3 ENSDARG00000014420 901.37 6756.76 ELAV like neuron-specific RNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-980526-76]
47. eno1a ENSDARG00000022456, ENSDARG00000116458 901.37 6756.76 enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
48. f11r f11r 901.37 6756.76
49. fam135a ENSDARG00000059843 901.37 6756.76 family with sequence similarity 135, member A [Source:ZFIN;Acc:ZDB-GENE-080130-1]
50. fdx1 ENSDARG00000056410, ENSDARG00000115831 901.37 6756.76 ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]
51. flot2b ENSDARG00000069774 901.37 6756.76 flotillin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1368]
52. fopnl ENSDARG00000071198 901.37 6756.76 fgfr1op N-terminal like [Source:ZFIN;Acc:ZDB-GENE-101124-1]
53. foxa2 ENSDARG00000003411 901.37 6756.76 forkhead box A2 [Source:ZFIN;Acc:ZDB-GENE-980526-404]
54. galnt13 ENSDARG00000099227 901.37 6756.76 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 [Source:ZFIN;Acc:ZDB-GENE-091204-444]
55. glceb ENSDARG00000068981 901.37 6756.76 glucuronic acid epimerase b [Source:ZFIN;Acc:ZDB-GENE-040630-8]
56. gmfb ENSDARG00000028327 901.37 6756.76 glia maturation factor, beta [Source:ZFIN;Acc:ZDB-GENE-040426-2114]
57. gng3 ENSDARG00000009553 901.37 6756.76 guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
58. hbae3 ENSDARG00000079305 901.37 6756.76 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
59. hbbe1.1_1 ENSDARG00000113599 901.37 6756.76 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
60. hmgn2 ENSDARG00000099572 901.37 6756.76 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
61. hnrnpab hnrnpab 901.37 6756.76
62. hnrnpua ENSDARG00000015206 901.37 6756.76 heterogeneous nuclear ribonucleoprotein Ua [Source:ZFIN;Acc:ZDB-GENE-030131-3731]
63. ilk ENSDARG00000056964 901.37 6756.76 integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]
64. inpp5f ENSDARG00000061437 901.37 6756.76 inositol polyphosphate-5-phosphatase F [Source:ZFIN;Acc:ZDB-GENE-041111-194]
65. khdrbs1b ENSDARG00000070475 901.37 6756.76 KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
66. mrps33 ENSDARG00000020015 901.37 6756.76 mitochondrial ribosomal protein S33 [Source:ZFIN;Acc:ZDB-GENE-040715-6]
67. mt-co1 ENSDARG00000063905 901.37 6756.76 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
68. mt-nd1 ENSDARG00000063895 901.37 6756.76 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
69. mt-nd2 ENSDARG00000063899 901.37 6756.76 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
70. myhz1.2 ENSDARG00000067995 901.37 6756.76 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
71. myhz1.3 ENSDARG00000067997 901.37 6756.76 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
72. myhz2 ENSDARG00000012944 901.37 6756.76 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
73. mylpfb ENSDARG00000002589 901.37 6756.76 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
74. ndrg2 ENSDARG00000011170 901.37 6756.76 NDRG family member 2 [Source:ZFIN;Acc:ZDB-GENE-041212-15]
75. nmrk2 ENSDARG00000067848 901.37 6756.76 nicotinamide riboside kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-44]
76. nnt ENSDARG00000023536 901.37 6756.76 nicotinamide nucleotide transhydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2592]
77. oaz1b ENSDARG00000104782 901.37 6756.76 ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
78. odc1 ENSDARG00000007377 901.37 6756.76 ornithine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-010816-1]
79. opa1_1 ENSDARG00000070801 901.37 6756.76 optic atrophy 1 (autosomal dominant) [Source:ZFIN;Acc:ZDB-GENE-041114-7]
80. pax6a ENSDARG00000103379 901.37 6756.76 paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
81. pck2 ENSDARG00000020956, ENSDARG00000110463 901.37 6756.76 phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-040426-2266]
82. pds5a ENSDARG00000055022, ENSDARG00000115793 901.37 6756.76 PDS5 cohesin associated factor A [Source:ZFIN;Acc:ZDB-GENE-040426-1612]
83. pknox1.2 ENSDARG00000036542 901.37 6756.76 pbx/knotted 1 homeobox 1.2 [Source:ZFIN;Acc:ZDB-GENE-020123-1]
84. pmp22b ENSDARG00000060457 901.37 6756.76 peripheral myelin protein 22b [Source:ZFIN;Acc:ZDB-GENE-060421-4337]
85. pou2f2a ENSDARG00000019658, ENSDARG00000036816 901.37 6756.76 POU class 2 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-060310-2]
86. ppiab ENSDARG00000103994 901.37 6756.76 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
87. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 901.37 6756.76 proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
88. pura pura 901.37 6756.76
89. rab5c ENSDARG00000026712 901.37 6756.76 RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
90. rbmx2 ENSDARG00000044380, ENSDARG00000115698 901.37 6756.76 RNA binding motif protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-050626-88]
91. rbx1 ENSDARG00000038030 901.37 6756.76 ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
92. rpl35 ENSDARG00000018334 901.37 6756.76 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
93. rpl9 ENSDARG00000037350, ENSDARG00000112384 901.37 6756.76 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
94. rplp1 ENSDARG00000021864 901.37 6756.76 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
95. rps14 ENSDARG00000036629 901.37 6756.76 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
96. rps2 ENSDARG00000077291 901.37 6756.76 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
97. rps29 ENSDARG00000041232 901.37 6756.76 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
98. rtn2a ENSDARG00000016088 901.37 6756.76 reticulon 2a [Source:ZFIN;Acc:ZDB-GENE-060420-1]
99. sec63 ENSDARG00000017740 901.37 6756.76 SEC63 homolog, protein translocation regulator [Source:ZFIN;Acc:ZDB-GENE-040718-328]
100. sema3ga ENSDARG00000042545 901.37 6756.76 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga [Source:ZFIN;Acc:ZDB-GENE-050513-3]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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