Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s69.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10470.77 78489.84
2. krt4 ENSDARG00000017624, ENSDARG00000115790 8792.25 65907.50 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. col1a1a ENSDARG00000012405, ENSDARG00000116113 7113.73 53325.16 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
4. tmsb4x ENSDARG00000077777 5675.00 42540.31 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. im:7150988 ENSDARG00000109310 2238.03 16776.48 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
6. CABZ01074130.1 ENSDARG00000105274 1998.24 14978.99
7. and1 ENSDARG00000088514 1758.45 13181.50 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
8. actb2 ENSDARG00000037870 1678.52 12582.34 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. cfl1l ENSDARG00000012972 1598.59 11983.18 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
10. and3 ENSDARG00000056873 1358.80 10185.69 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
11. actb1 ENSDARG00000037746, ENSDARG00000113649 1039.08 7789.04 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
12. icn ENSDARG00000009978 1039.08 7789.04 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
13. krt8 ENSDARG00000058358, ENSDARG00000109279 1039.08 7789.04 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
14. pfn1 ENSDARG00000088091 1039.08 7789.04 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
15. zgc:92061 zgc:92061 1039.08 7789.04
16. sparc ENSDARG00000019353 959.15 7189.88 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
17. ptmab ENSDARG00000101766 799.30 5991.63 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
18. icn2 ENSDARG00000055514 719.37 5392.46 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
19. rplp1 ENSDARG00000021864 719.37 5392.46 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
20. FP067396.1 FP067396.1 559.51 4194.14
21. eef1a1l1 ENSDARG00000020850 559.51 4194.14 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 559.51 4194.14 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. rpl21 ENSDARG00000010516, ENSDARG00000110263 559.51 4194.14 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
24. bcam ENSDARG00000090190 479.58 3594.98 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
25. cldni ENSDARG00000054616, ENSDARG00000111133 479.58 3594.98 claudin i [Source:ZFIN;Acc:ZDB-GENE-010328-9]
26. cyt1l ENSDARG00000036832 479.58 3594.98 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
27. mt-atp6 ENSDARG00000063911 479.58 3594.98 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
28. myl12.1 ENSDARG00000099766 479.58 3594.98 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
29. rps12 ENSDARG00000036875, ENSDARG00000115157 479.58 3594.98 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
30. BX511245.1 ENSDARG00000096871 399.65 2995.81
31. anxa1c ENSDARG00000104359 399.65 2995.81 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
32. capn9 ENSDARG00000012341 399.65 2995.81 calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
33. mt-co2 ENSDARG00000063908 399.65 2995.81 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
34. mt-nd2 ENSDARG00000063899 399.65 2995.81 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
35. mt-nd4 ENSDARG00000063917 399.65 2995.81 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
36. myh9a ENSDARG00000063295 399.65 2995.81 myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
37. rps26l ENSDARG00000030408 399.65 2995.81 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
38. si:ch211-157c3.4 ENSDARG00000087093 399.65 2995.81 si:ch211-157c3.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8454]
39. zgc:112425 zgc:112425 399.65 2995.81
40. RPL37A RPL37A 319.72 2396.65
41. RPS17L RPS17L 319.72 2396.65
42. and2 ENSDARG00000079302 319.72 2396.65 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
43. cast ENSDARG00000058693 319.72 2396.65 calpastatin [Source:ZFIN;Acc:ZDB-GENE-050810-2]
44. ccng1 ENSDARG00000076667, ENSDARG00000110260 319.72 2396.65 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
45. cdh1 ENSDARG00000102750 319.72 2396.65 cadherin 1, type 1, E-cadherin (epithelial) [Source:ZFIN;Acc:ZDB-GENE-010606-1]
46. dynll1 ENSDARG00000058454 319.72 2396.65 dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
47. eef2b ENSDARG00000100371, ENSDARG00000109247 319.72 2396.65 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. ogn 319.72 2396.65 osteoglycin
49. pabpc1a ENSDARG00000017219 319.72 2396.65 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
50. rpl15 ENSDARG00000009285 319.72 2396.65 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
51. rpl18a ENSDARG00000025073 319.72 2396.65 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. rpl19 ENSDARG00000013307 319.72 2396.65 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
53. rpl5b ENSDARG00000015862, ENSDARG00000109661 319.72 2396.65 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
54. rpl8 ENSDARG00000014867 319.72 2396.65 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
55. rplp2 ENSDARG00000101406 319.72 2396.65 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
56. rps13 ENSDARG00000036298, ENSDARG00000112818 319.72 2396.65 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
57. rps24 ENSDARG00000039347 319.72 2396.65 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
58. si:dkey-87o1.2 ENSDARG00000095796 319.72 2396.65 si:dkey-87o1.2 [Source:ZFIN;Acc:ZDB-GENE-110411-217]
59. tagln2 ENSDARG00000033466, ENSDARG00000110753 319.72 2396.65 transgelin 2 [Source:ZFIN;Acc:ZDB-GENE-020802-2]
60. zgc:153129 zgc:153129 319.72 2396.65
61. zgc:92533 zgc:92533 319.72 2396.65
62. ARID3C ENSDARG00000067729, ENSDARG00000114447 239.79 1797.49 AT rich interactive domain 3C (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-060526-12]
63. MAL 239.79 1797.49 mal, T-cell differentiation protein
64. anxa2a ENSDARG00000003216 239.79 1797.49 annexin A2a [Source:ZFIN;Acc:ZDB-GENE-030131-4282]
65. apoc1l apoc1l 239.79 1797.49
66. apoeb ENSDARG00000040295 239.79 1797.49 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
67. capza1a ENSDARG00000034240 239.79 1797.49 capping actin protein of muscle Z-line subunit alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5237]
68. cdc42l ENSDARG00000040158, ENSDARG00000116748 239.79 1797.49 cell division cycle 42, like [Source:ZFIN;Acc:ZDB-GENE-030131-6069]
69. csrp1a ENSDARG00000006603 239.79 1797.49 cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
70. f11r f11r 239.79 1797.49
71. fkbp1aa ENSDARG00000022684 239.79 1797.49 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
72. glulb ENSDARG00000100003, ENSDARG00000113742 239.79 1797.49 glutamate-ammonia ligase (glutamine synthase) b [Source:ZFIN;Acc:ZDB-GENE-030131-8417]
73. hmgn2 ENSDARG00000099572 239.79 1797.49 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
74. id1 ENSDARG00000040764 239.79 1797.49 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
75. inppl1a ENSDARG00000104222 239.79 1797.49 inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
76. marcksl1a ENSDARG00000039034 239.79 1797.49 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
77. mt-co3 ENSDARG00000063912 239.79 1797.49 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
78. plcd1b ENSDARG00000034080 239.79 1797.49 phospholipase C, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9435]
79. pnrc2 ENSDARG00000053291, ENSDARG00000112537 239.79 1797.49 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
80. rbx1 ENSDARG00000038030 239.79 1797.49 ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
81. rpl10a ENSDARG00000042905, ENSDARG00000115649 239.79 1797.49 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
82. rpl11 ENSDARG00000043509 239.79 1797.49 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
83. rpl26 ENSDARG00000102317 239.79 1797.49 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
84. rpl30 ENSDARG00000035871, ENSDARG00000109253 239.79 1797.49 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
85. rps29 ENSDARG00000041232 239.79 1797.49 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
86. s100a10b ENSDARG00000025254 239.79 1797.49 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
87. sec61b ENSDARG00000076568 239.79 1797.49 Sec61 translocon beta subunit [Source:ZFIN;Acc:ZDB-GENE-040718-260]
88. si:dkey-151g10.6 si:dkey-151g10.6 239.79 1797.49
89. sin3ab ENSDARG00000059812 239.79 1797.49 SIN3 transcription regulator family member Ab [Source:ZFIN;Acc:ZDB-GENE-030131-2066]
90. slc25a23a ENSDARG00000005690 239.79 1797.49 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23a [Source:ZFIN;Acc:ZDB-GENE-121214-154]
91. tnc ENSDARG00000021948, ENSDARG00000113518 239.79 1797.49 tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
92. wu:fj05h12 wu:fj05h12 239.79 1797.49
93. zgc:101000 zgc:101000 239.79 1797.49
94. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 239.79 1797.49 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
95. zgc:77849 ENSDARG00000012458, ENSDARG00000116615 239.79 1797.49 zgc:77849 [Source:ZFIN;Acc:ZDB-GENE-030131-1107]
96. CABZ01007794.1 CABZ01007794.1 159.86 1198.33
97. COL2A1 COL2A1 159.86 1198.33
98. COX5B_1 ENSDARG00000015978 159.86 1198.33 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
99. PACS1_1 PACS1_1 159.86 1198.33
100. RNF5 ENSDARG00000075606 159.86 1198.33 ring finger protein 5 [Source:HGNC Symbol;Acc:HGNC:10068]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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