Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s68.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8399.94 62967.32
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7830.45 58698.33 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. col1a1a ENSDARG00000012405, ENSDARG00000116113 7545.71 56563.87 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
4. tmsb4x ENSDARG00000077777 5125.39 38420.76 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. and1 ENSDARG00000088514 2847.44 21344.87 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
6. CABZ01074130.1 ENSDARG00000105274 1281.35 9605.21
7. si:dkey-151g10.6 si:dkey-151g10.6 1138.97 8537.90
8. actb2 ENSDARG00000037870 996.60 7470.68 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. im:7150988 ENSDARG00000109310 996.60 7470.68 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
10. krt8 ENSDARG00000058358, ENSDARG00000109279 996.60 7470.68 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
11. mt-co2 ENSDARG00000063908 996.60 7470.68 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. actb1 ENSDARG00000037746, ENSDARG00000113649 854.23 6403.45 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
13. and3 ENSDARG00000056873 854.23 6403.45 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
14. cyt1l ENSDARG00000036832 854.23 6403.45 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
15. eef1a1l1 ENSDARG00000020850 854.23 6403.45 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. icn2 ENSDARG00000055514 854.23 6403.45 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
17. tpma ENSDARG00000033683 854.23 6403.45 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
18. and2 ENSDARG00000079302 711.86 5336.22 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
19. rpl8 ENSDARG00000014867 711.86 5336.22 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
20. wu:fb17f05 wu:fb17f05 711.86 5336.22
21. zgc:92061 zgc:92061 711.86 5336.22
22. csnk1a1_1 ENSDARG00000052674, ENSDARG00000112077 569.49 4268.99 casein kinase 1, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-020419-19]
23. glrx ENSDARG00000028106 569.49 4268.99 glutaredoxin (thioltransferase) [Source:ZFIN;Acc:ZDB-GENE-041010-11]
24. rpl10a ENSDARG00000042905, ENSDARG00000115649 569.49 4268.99 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
25. rpl18a ENSDARG00000025073 569.49 4268.99 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. rplp1 ENSDARG00000021864 569.49 4268.99 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
27. rps13 ENSDARG00000036298, ENSDARG00000112818 569.49 4268.99 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
28. zgc:153129 zgc:153129 569.49 4268.99
29. FAM110D FAM110D 427.12 3201.76
30. actc1b ENSDARG00000099197 427.12 3201.76 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
31. btf3 ENSDARG00000035400, ENSDARG00000116462 427.12 3201.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
32. calua ENSDARG00000045676 427.12 3201.76 calumenin a [Source:ZFIN;Acc:ZDB-GENE-040625-166]
33. capn9 ENSDARG00000012341 427.12 3201.76 calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
34. cfl1l ENSDARG00000012972 427.12 3201.76 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
35. copb2 ENSDARG00000038743, ENSDARG00000114286 427.12 3201.76 coatomer protein complex, subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-010724-7]
36. hspa8 ENSDARG00000068992, ENSDARG00000114726 427.12 3201.76 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
37. mt-co3 ENSDARG00000063912 427.12 3201.76 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
38. mt-nd4 ENSDARG00000063917 427.12 3201.76 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
39. mylz3 ENSDARG00000017441 427.12 3201.76 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
40. ndufs5 ENSDARG00000006290 427.12 3201.76 NADH:ubiquinone oxidoreductase subunit S5 [Source:ZFIN;Acc:ZDB-GENE-050522-437]
41. ptmaa ENSDARG00000021113, ENSDARG00000110479 427.12 3201.76 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
42. ptmab ENSDARG00000101766 427.12 3201.76 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
43. rpl5a ENSDARG00000020197 427.12 3201.76 ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
44. rps12 ENSDARG00000036875, ENSDARG00000115157 427.12 3201.76 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
45. rps4x ENSDARG00000014690 427.12 3201.76 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
46. rps7 ENSDARG00000042566 427.12 3201.76 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
47. si:dkey-102c8.3 ENSDARG00000113572 427.12 3201.76 si:dkey-102c8.3 [Source:ZFIN;Acc:ZDB-GENE-050208-328]
48. si:dkey-118j18.2 ENSDARG00000096457 427.12 3201.76 si:dkey-118j18.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8692]
49. tnni2a.4 ENSDARG00000029069 427.12 3201.76 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
50. ubc ENSDARG00000102632 427.12 3201.76 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
51. zgc:66286 zgc:66286 427.12 3201.76
52. CABZ01007794.1 CABZ01007794.1 284.74 2134.46
53. FP067396.1 FP067396.1 284.74 2134.46
54. TNRC6A ENSDARG00000079688 284.74 2134.46 trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
55. acta1a ENSDARG00000036371 284.74 2134.46 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
56. adam10a ENSDARG00000053468 284.74 2134.46 ADAM metallopeptidase domain 10a [Source:ZFIN;Acc:ZDB-GENE-040917-2]
57. anxa1c ENSDARG00000104359 284.74 2134.46 annexin A1c [Source:ZFIN;Acc:ZDB-GENE-030131-5274]
58. apoc1l apoc1l 284.74 2134.46
59. arpp19a ENSDARG00000032532, ENSDARG00000109679 284.74 2134.46 cAMP-regulated phosphoprotein 19a [Source:ZFIN;Acc:ZDB-GENE-040426-1281]
60. ckmb ENSDARG00000040565 284.74 2134.46 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
61. cnn2 ENSDARG00000035858 284.74 2134.46 calponin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-542]
62. cnot6 cnot6 284.74 2134.46
63. dynll1 ENSDARG00000058454 284.74 2134.46 dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
64. eif5a ENSDARG00000017235 284.74 2134.46 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
65. eppk1 ENSDARG00000096359 284.74 2134.46 epiplakin 1 [Source:ZFIN;Acc:ZDB-GENE-030416-1]
66. fkbp1aa ENSDARG00000022684 284.74 2134.46 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
67. fkbp9 ENSDARG00000005023 284.74 2134.46 FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
68. fras1 ENSDARG00000054619, ENSDARG00000114204 284.74 2134.46 Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]
69. frem2a ENSDARG00000076856 284.74 2134.46 Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
70. hbae1 284.74 2134.46 hemoglobin, alpha embryonic 1
71. hif1al ENSDARG00000100826 284.74 2134.46 hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
72. hmcn1 ENSDARG00000016936 284.74 2134.46 hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]
73. hmga1a ENSDARG00000028335 284.74 2134.46 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
74. itgb3a ENSDARG00000056767, ENSDARG00000115691 284.74 2134.46 integrin beta 3a [Source:ZFIN;Acc:ZDB-GENE-071207-1]
75. macc1 ENSDARG00000040717 284.74 2134.46 metastasis associated in colon cancer 1 [Source:ZFIN;Acc:ZDB-GENE-091006-3]
76. mapk3 ENSDARG00000070573 284.74 2134.46 mitogen-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040121-1]
77. mdka ENSDARG00000036036 284.74 2134.46 midkine a [Source:ZFIN;Acc:ZDB-GENE-990621-1]
78. met ENSDARG00000070903 284.74 2134.46 MET proto-oncogene, receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-041014-1]
79. mt-atp6 ENSDARG00000063911 284.74 2134.46 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
80. mt-nd1 ENSDARG00000063895 284.74 2134.46 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
81. mt-nd2 ENSDARG00000063899 284.74 2134.46 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
82. myl12.1 ENSDARG00000099766 284.74 2134.46 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
83. ostc ENSDARG00000104901 284.74 2134.46 oligosaccharyltransferase complex subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1079]
84. paip1 ENSDARG00000042892 284.74 2134.46 poly(A) binding protein interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040801-247]
85. pfn1 ENSDARG00000088091 284.74 2134.46 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
86. pgk1 ENSDARG00000054191 284.74 2134.46 phosphoglycerate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2711]
87. ppiaa ENSDARG00000009212 284.74 2134.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
88. ppp2cb ENSDARG00000099241, ENSDARG00000111489 284.74 2134.46 protein phosphatase 2, catalytic subunit, beta isozyme [Source:ZFIN;Acc:ZDB-GENE-040426-2487]
89. prps1a ENSDARG00000015524 284.74 2134.46 phosphoribosyl pyrophosphate synthetase 1A [Source:ZFIN;Acc:ZDB-GENE-011212-5]
90. ptgdsb ptgdsb 284.74 2134.46
91. rasgef1ba ENSDARG00000033614, ENSDARG00000116057 284.74 2134.46 RasGEF domain family, member 1Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5783]
92. rgs12b ENSDARG00000036774 284.74 2134.46 regulator of G protein signaling 12b [Source:ZFIN;Acc:ZDB-GENE-031006-13]
93. robo3 ENSDARG00000005645 284.74 2134.46 roundabout, axon guidance receptor, homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-000209-4]
94. rpl14 ENSDARG00000103433 284.74 2134.46 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
95. rpl23 ENSDARG00000053457 284.74 2134.46 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
96. rpl24 ENSDARG00000099104 284.74 2134.46 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
97. rpl26 ENSDARG00000102317 284.74 2134.46 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
98. rpl5b ENSDARG00000015862, ENSDARG00000109661 284.74 2134.46 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
99. rpl9 ENSDARG00000037350, ENSDARG00000112384 284.74 2134.46 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
100. rps14 ENSDARG00000036629 284.74 2134.46 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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