Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s66.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 8695.05 65180.01 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. AC024175.4 AC024175.4 6501.70 48738.18
3. col1a1a ENSDARG00000012405, ENSDARG00000116113 4308.36 32296.42 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
4. tmsb4x ENSDARG00000077777 3603.35 27011.51 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. and1 ENSDARG00000088514 1958.34 14680.15 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1880.01 14092.97 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. krt8 ENSDARG00000058358, ENSDARG00000109279 1331.67 9982.49 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
8. actb2 ENSDARG00000037870 1096.67 8220.88 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. CABZ01074130.1 ENSDARG00000105274 1018.34 7633.70
10. si:dkey-151g10.6 si:dkey-151g10.6 1018.34 7633.70
11. im:7150988 ENSDARG00000109310 940.01 7046.52 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
12. eef1a1l1 ENSDARG00000020850 861.67 6459.27 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. and3 ENSDARG00000056873 783.34 5872.09 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
14. id1 ENSDARG00000040764 705.00 5284.84 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
15. pfn1 ENSDARG00000088091 705.00 5284.84 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
16. icn ENSDARG00000009978 626.67 4697.66 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
17. and2 ENSDARG00000079302 548.34 4110.48 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
18. apoc1l apoc1l 548.34 4110.48
19. cyt1l ENSDARG00000036832 548.34 4110.48 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
20. mt-nd4 ENSDARG00000063917 548.34 4110.48 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
21. rps12 ENSDARG00000036875, ENSDARG00000115157 548.34 4110.48 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
22. ssr2 ENSDARG00000005230 548.34 4110.48 signal sequence receptor, beta [Source:ZFIN;Acc:ZDB-GENE-010413-1]
23. cfl1l ENSDARG00000012972 470.00 3523.22 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
24. col2a1a ENSDARG00000069093, ENSDARG00000111202 470.00 3523.22 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
25. krt18 ENSDARG00000018404, ENSDARG00000109528 470.00 3523.22 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
26. mt-cyb ENSDARG00000063924 470.00 3523.22 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. rpl19 ENSDARG00000013307 470.00 3523.22 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
28. rpl21 ENSDARG00000010516, ENSDARG00000110263 470.00 3523.22 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
29. rpl27 ENSDARG00000015128 470.00 3523.22 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
30. rpl36 ENSDARG00000100588 470.00 3523.22 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
31. rps15 ENSDARG00000070849, ENSDARG00000110979 470.00 3523.22 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
32. rps23 ENSDARG00000021838 470.00 3523.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
33. zgc:112425 zgc:112425 470.00 3523.22
34. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 470.00 3523.22 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
35. zgc:92061 zgc:92061 470.00 3523.22
36. btf3 ENSDARG00000035400, ENSDARG00000116462 391.67 2936.04 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. cope ENSDARG00000018562 391.67 2936.04 coatomer protein complex, subunit epsilon [Source:ZFIN;Acc:ZDB-GENE-041114-59]
38. hmga1a ENSDARG00000028335 391.67 2936.04 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. hspa8 ENSDARG00000068992, ENSDARG00000114726 391.67 2936.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
40. mt-nd1 ENSDARG00000063895 391.67 2936.04 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
41. mt-nd2 ENSDARG00000063899 391.67 2936.04 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
42. myl12.1 ENSDARG00000099766 391.67 2936.04 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
43. ptmab ENSDARG00000101766 391.67 2936.04 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
44. rpl18a ENSDARG00000025073 391.67 2936.04 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
45. rpl26 ENSDARG00000102317 391.67 2936.04 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
46. rplp1 ENSDARG00000021864 391.67 2936.04 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
47. rps26l ENSDARG00000030408 391.67 2936.04 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. sparc ENSDARG00000019353 391.67 2936.04 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
49. wu:fb17f05 wu:fb17f05 391.67 2936.04
50. FP067396.1 FP067396.1 313.34 2348.87
51. capns1b ENSDARG00000013804 313.34 2348.87 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
52. cbfa2t2 ENSDARG00000074337 313.34 2348.87 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 [Source:ZFIN;Acc:ZDB-GENE-070209-1]
53. h1f0 ENSDARG00000038559 313.34 2348.87 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
54. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 313.34 2348.87 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
55. ncana 313.34 2348.87 neurocan a
56. psmd12 ENSDARG00000052377 313.34 2348.87 proteasome 26S subunit, non-ATPase 12 [Source:ZFIN;Acc:ZDB-GENE-030131-617]
57. rpl11 ENSDARG00000043509 313.34 2348.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. rpl15 ENSDARG00000009285 313.34 2348.87 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
59. rpl39 ENSDARG00000036316, ENSDARG00000117167 313.34 2348.87 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
60. rpl6 ENSDARG00000058451 313.34 2348.87 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
61. rps14 ENSDARG00000036629 313.34 2348.87 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
62. rps15a ENSDARG00000010160 313.34 2348.87 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
63. rps16 ENSDARG00000045487 313.34 2348.87 ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-050506-107]
64. serp1 ENSDARG00000099439 313.34 2348.87 stress-associated endoplasmic reticulum protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8741]
65. si:ch211-243g18.2 ENSDARG00000044261 313.34 2348.87 si:ch211-243g18.2 [Source:ZFIN;Acc:ZDB-GENE-030131-2830]
66. zgc:165571 zgc:165571 313.34 2348.87
67. zgc:92533 zgc:92533 313.34 2348.87
68. BX511121.1 ENSDARG00000029997 235.00 1761.61
69. CU914813.1 CU914813.1 235.00 1761.61
70. PPFIBP1_2 PPFIBP1_2 235.00 1761.61
71. RPL29 ENSDARG00000077717 235.00 1761.61 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
72. acta1b ENSDARG00000055618 235.00 1761.61 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
73. anxa1a ENSDARG00000026726 235.00 1761.61 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
74. ap2s1 ENSDARG00000026967 235.00 1761.61 adaptor related protein complex 2 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2174]
75. atp5c1 235.00 1761.61 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant 3
76. calm1b ENSDARG00000034187 235.00 1761.61 calmodulin 1b [Source:ZFIN;Acc:ZDB-GENE-030804-2]
77. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 235.00 1761.61 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
78. cmn ENSDARG00000055527 235.00 1761.61 calymmin [Source:ZFIN;Acc:ZDB-GENE-000208-9]
79. col11a1a ENSDARG00000026165, ENSDARG00000115341 235.00 1761.61 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
80. col1a1b ENSDARG00000035809 235.00 1761.61 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
81. colgalt2 ENSDARG00000014670 235.00 1761.61 collagen beta(1-O)galactosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-070222-1]
82. copa ENSDARG00000004173 235.00 1761.61 coatomer protein complex, subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020905-2]
83. efemp2a ENSDARG00000094324 235.00 1761.61 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
84. eif3c ENSDARG00000016443 235.00 1761.61 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
85. fabp3 ENSDARG00000023290 235.00 1761.61 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
86. hsp90ab1 ENSDARG00000029150 235.00 1761.61 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
87. inppl1a ENSDARG00000104222 235.00 1761.61 inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
88. kdelr2a ENSDARG00000005254 235.00 1761.61 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2a [Source:ZFIN;Acc:ZDB-GENE-030826-32]
89. mt-co2 ENSDARG00000063908 235.00 1761.61 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
90. mt-co3 ENSDARG00000063912 235.00 1761.61 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
91. pak2a ENSDARG00000068177 235.00 1761.61 p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
92. pcna ENSDARG00000054155 235.00 1761.61 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
93. ppiab ENSDARG00000103994 235.00 1761.61 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
94. rab2a ENSDARG00000020261 235.00 1761.61 RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
95. rpl10a ENSDARG00000042905, ENSDARG00000115649 235.00 1761.61 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
96. rpl14 ENSDARG00000103433 235.00 1761.61 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
97. rpl23 ENSDARG00000053457 235.00 1761.61 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
98. rpl23a ENSDARG00000006316 235.00 1761.61 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
99. rpl24 ENSDARG00000099104 235.00 1761.61 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
100. rpl28 ENSDARG00000005791 235.00 1761.61 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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