Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s63.

Sample reads: 133,415. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11311.20 84782.22
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7455.69 55883.54 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2510.76 18819.21 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 2395.86 17957.98 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. actb2 ENSDARG00000037870 1510.71 11323.41 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1374.54 10302.76 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. mt-nd2 ENSDARG00000063899 740.46 5550.06 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. hmga1a ENSDARG00000028335 697.91 5231.13 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. eef1a1l1 ENSDARG00000020850 689.40 5167.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. zgc:112425 zgc:112425 646.84 4848.34
11. mt-co2 ENSDARG00000063908 638.33 4784.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. cfl1l ENSDARG00000012972 634.07 4752.62 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
13. si:dkey-151g10.6 si:dkey-151g10.6 621.31 4656.98
14. mt-atp6 ENSDARG00000063911 583.01 4369.91 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. zgc:92533 zgc:92533 583.01 4369.91
16. mt-nd4 ENSDARG00000063917 557.47 4178.47 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. ptmab ENSDARG00000101766 557.47 4178.47 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
18. icn ENSDARG00000009978 548.96 4114.69 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
19. cyt1l ENSDARG00000036832 531.94 3987.11 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
20. ppiaa ENSDARG00000009212 519.17 3891.40 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. mt-co3 ENSDARG00000063912 514.92 3859.54 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. id1 ENSDARG00000040764 497.90 3731.97 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
23. CABZ01074130.1 ENSDARG00000105274 493.64 3700.04
24. col1a1b ENSDARG00000035809 489.39 3668.18 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
25. and2 ENSDARG00000079302 472.36 3540.54 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
26. krt8 ENSDARG00000058358, ENSDARG00000109279 468.11 3508.68 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
27. and1 ENSDARG00000088514 459.60 3444.90 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
28. pfn1 ENSDARG00000088091 446.83 3349.18 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
29. eef2b ENSDARG00000100371, ENSDARG00000109247 417.04 3125.89 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
30. hspa8 ENSDARG00000068992, ENSDARG00000114726 391.51 2934.53 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
31. rpl23 ENSDARG00000053457 383.00 2870.75 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. zgc:66286 zgc:66286 383.00 2870.75
33. and3 ENSDARG00000056873 365.98 2743.17 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
34. rpl8 ENSDARG00000014867 357.46 2679.31 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
35. rplp1 ENSDARG00000021864 353.21 2647.46 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 348.95 2615.53 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. hmgn2 ENSDARG00000099572 327.68 2456.10 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
38. mt-nd1 ENSDARG00000063895 327.68 2456.10 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
39. rpl26 ENSDARG00000102317 319.16 2392.24 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. col1a2 ENSDARG00000020007 314.91 2360.38 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
41. tpm3 ENSDARG00000005162 314.91 2360.38 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
42. mt-cyb ENSDARG00000063924 310.65 2328.45 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
43. AL954137.2 ENSDARG00000114408 306.40 2296.60
44. im:7150988 ENSDARG00000109310 297.89 2232.81 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
45. rpl21 ENSDARG00000010516, ENSDARG00000110263 297.89 2232.81 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
46. s100a10b ENSDARG00000025254 297.89 2232.81 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
47. myl10 ENSDARG00000062592 285.12 2137.09 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
48. rps2 ENSDARG00000077291 285.12 2137.09 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
49. rps27a ENSDARG00000032725, ENSDARG00000114059 285.12 2137.09 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
50. rpl11 ENSDARG00000043509 276.61 2073.31 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
51. rpl18a ENSDARG00000025073 272.35 2041.38 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. rps26l ENSDARG00000030408 272.35 2041.38 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. fkbp1aa ENSDARG00000022684 268.10 2009.52 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
54. rpl19 ENSDARG00000013307 268.10 2009.52 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
55. rps23 ENSDARG00000021838 268.10 2009.52 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. si:ch1073-429i10.3 268.10 2009.52 si:ch1073-429i10.3, transcript variant X2
57. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 268.10 2009.52 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
58. acta1a ENSDARG00000036371 263.84 1977.59 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
59. col2a1a ENSDARG00000069093, ENSDARG00000111202 255.33 1913.81 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
60. rpl9 ENSDARG00000037350, ENSDARG00000112384 255.33 1913.81 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
61. actc1b ENSDARG00000099197 251.08 1881.95 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
62. ckma ENSDARG00000035327, ENSDARG00000114671 242.57 1818.16 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
63. rpl36a ENSDARG00000058105, ENSDARG00000112656 238.31 1786.23 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
64. rps14 ENSDARG00000036629 238.31 1786.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
65. pabpc1a ENSDARG00000017219 234.05 1754.30 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
66. rpsa ENSDARG00000019181 234.05 1754.30 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
67. pcna ENSDARG00000054155 229.80 1722.45 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
68. smyhc1 ENSDARG00000099959, ENSDARG00000115916 229.80 1722.45 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
69. h3f3a 225.54 1690.52 H3 histone, family 3A, transcript variant X1
70. rps12 ENSDARG00000036875, ENSDARG00000115157 221.29 1658.66 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
71. si:dkeyp-86f7.3 si:dkeyp-86f7.3 221.29 1658.66
72. rpl27 ENSDARG00000015128 217.03 1626.73 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
73. rpl7 ENSDARG00000007320 217.03 1626.73 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
74. sparc ENSDARG00000019353 217.03 1626.73 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
75. hsp90ab1 ENSDARG00000029150 212.78 1594.88 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
76. rps20 ENSDARG00000036044 212.78 1594.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. krt18 ENSDARG00000018404, ENSDARG00000109528 208.52 1562.95 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
78. myl12.1 ENSDARG00000099766 204.27 1531.09 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
79. rpl36 ENSDARG00000100588 204.27 1531.09 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
80. rps10 ENSDARG00000034897 204.27 1531.09 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
81. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 200.01 1499.16 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
82. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 200.01 1499.16 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
83. cfl1 ENSDARG00000021124 195.75 1467.23 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
84. icn2 ENSDARG00000055514 195.75 1467.23 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
85. rps15 ENSDARG00000070849, ENSDARG00000110979 195.75 1467.23 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
86. zgc:165571 zgc:165571 195.75 1467.23
87. gch2 ENSDARG00000099101 191.50 1435.37 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
88. btf3 ENSDARG00000035400, ENSDARG00000116462 187.24 1403.44 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
89. rps19 ENSDARG00000030602 187.24 1403.44 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
90. rps5 ENSDARG00000043453 187.24 1403.44 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
91. rps4x ENSDARG00000014690 182.99 1371.59 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
92. rps24 ENSDARG00000039347 178.73 1339.66 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
93. rps6 ENSDARG00000019778 178.73 1339.66 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. faua ENSDARG00000099022 174.48 1307.80 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
95. rplp0 ENSDARG00000051783 174.48 1307.80 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
96. FP067396.1 FP067396.1 170.22 1275.87
97. ahnak ENSDARG00000061764 170.22 1275.87 AHNAK nucleoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-8719]
98. calm2a ENSDARG00000031427, ENSDARG00000111871 170.22 1275.87 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
99. ckmb ENSDARG00000040565 170.22 1275.87 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
100. eif5a ENSDARG00000017235 165.97 1244.02 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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