Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s62.

Sample reads: 133,416. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 8155.72 61129.86 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. AC024175.4 AC024175.4 2429.08 18206.77
3. tmsb4x ENSDARG00000077777 1988.04 14901.03 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 1804.84 13527.88 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. actb2 ENSDARG00000037870 1689.50 12663.37 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1384.17 10374.82 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. mt-co2 ENSDARG00000063908 1051.69 7882.77 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mt-nd2 ENSDARG00000063899 990.63 7425.10 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. ppiaa ENSDARG00000009212 936.35 7018.26 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. mt-atp6 ENSDARG00000063911 861.71 6458.81 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. mt-nd4 ENSDARG00000063917 821.00 6153.67 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. eef1a1l1 ENSDARG00000020850 746.36 5594.22 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. ptmab ENSDARG00000101766 726.01 5441.69 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
14. id1 ENSDARG00000040764 685.30 5136.55 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
15. mt-co3 ENSDARG00000063912 685.30 5136.55 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. col1a1b ENSDARG00000035809 678.51 5085.66 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 651.37 4882.24 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. zgc:112425 zgc:112425 651.37 4882.24
19. si:dkey-151g10.6 si:dkey-151g10.6 644.59 4831.42
20. cfl1l ENSDARG00000012972 522.45 3915.94 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
21. pfn1 ENSDARG00000088091 522.45 3915.94 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
22. hmga1a ENSDARG00000028335 515.67 3865.12 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
23. zgc:92533 zgc:92533 502.10 3763.41
24. mt-nd1 ENSDARG00000063895 495.31 3712.51 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. icn ENSDARG00000009978 488.53 3661.70 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
26. and1 ENSDARG00000088514 481.74 3610.80 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
27. rpl8 ENSDARG00000014867 468.17 3509.09 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. hspa8 ENSDARG00000068992, ENSDARG00000114726 447.82 3356.56 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
29. krt8 ENSDARG00000058358, ENSDARG00000109279 434.25 3254.85 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
30. ckma ENSDARG00000035327, ENSDARG00000114671 427.46 3203.96 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
31. cyt1l ENSDARG00000036832 427.46 3203.96 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
32. tpma ENSDARG00000033683 413.89 3102.24 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
33. col1a2 ENSDARG00000020007 393.54 2949.71 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
34. eef2b ENSDARG00000100371, ENSDARG00000109247 393.54 2949.71 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
35. rpl23 ENSDARG00000053457 393.54 2949.71 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
36. btf3 ENSDARG00000035400, ENSDARG00000116462 373.18 2797.11 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. rpl18a ENSDARG00000025073 373.18 2797.11 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
38. rpsa ENSDARG00000019181 373.18 2797.11 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
39. zgc:66286 zgc:66286 373.18 2797.11
40. and2 ENSDARG00000079302 366.40 2746.29 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
41. gch2 ENSDARG00000099101 366.40 2746.29 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
42. rpl21 ENSDARG00000010516, ENSDARG00000110263 366.40 2746.29 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
43. rpl26 ENSDARG00000102317 366.40 2746.29 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. hmgn2 ENSDARG00000099572 352.83 2644.58 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
45. myl10 ENSDARG00000062592 352.83 2644.58 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
46. rpl19 ENSDARG00000013307 339.26 2542.87 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. rpl9 ENSDARG00000037350, ENSDARG00000112384 339.26 2542.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
48. rps20 ENSDARG00000036044 339.26 2542.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
49. and3 ENSDARG00000056873 332.47 2491.97 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
50. pabpc1a ENSDARG00000017219 332.47 2491.97 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
51. rplp1 ENSDARG00000021864 332.47 2491.97 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. rps23 ENSDARG00000021838 318.90 2390.26 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
53. rpl36 ENSDARG00000100588 312.12 2339.44 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
54. AL954137.2 ENSDARG00000114408 305.33 2288.55
55. ckmb ENSDARG00000040565 305.33 2288.55 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
56. mt-cyb ENSDARG00000063924 305.33 2288.55 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
57. si:ch1073-429i10.3 298.55 2237.73 si:ch1073-429i10.3, transcript variant X2
58. rps6 ENSDARG00000019778 291.76 2186.84 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
59. rpl15 ENSDARG00000009285 284.98 2136.02 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
60. rps4x ENSDARG00000014690 284.98 2136.02 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
61. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 284.98 2136.02 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
62. rps15a ENSDARG00000010160 278.19 2085.13 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
63. rps26l ENSDARG00000030408 278.19 2085.13 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
64. CABZ01074130.1 ENSDARG00000105274 271.41 2034.31
65. acta1a ENSDARG00000036371 271.41 2034.31 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
66. rps2 ENSDARG00000077291 271.41 2034.31 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. tnnc2 ENSDARG00000070835, ENSDARG00000111155 264.62 1983.42 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
68. actc1b ENSDARG00000099197 257.83 1932.52 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
69. krt18 ENSDARG00000018404, ENSDARG00000109528 257.83 1932.52 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
70. rpl28 ENSDARG00000005791 257.83 1932.52 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
71. rplp2 ENSDARG00000101406 257.83 1932.52 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
72. rps24 ENSDARG00000039347 257.83 1932.52 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
73. rps5 ENSDARG00000043453 257.83 1932.52 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
74. rps9 ENSDARG00000011405, ENSDARG00000113248 257.83 1932.52 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
75. myl12.1 ENSDARG00000099766 251.05 1881.70 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
76. rpl36a ENSDARG00000058105, ENSDARG00000112656 251.05 1881.70 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
77. faua ENSDARG00000099022 244.26 1830.81 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
78. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 244.26 1830.81 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
79. rps27a ENSDARG00000032725, ENSDARG00000114059 244.26 1830.81 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
80. tpm3 ENSDARG00000005162 244.26 1830.81 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
81. hnrnpab hnrnpab 237.48 1779.99
82. rpl11 ENSDARG00000043509 237.48 1779.99 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
83. rpl5b ENSDARG00000015862, ENSDARG00000109661 237.48 1779.99 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
84. rps15 ENSDARG00000070849, ENSDARG00000110979 237.48 1779.99 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
85. s100a10b ENSDARG00000025254 237.48 1779.99 S100 calcium binding protein A10b [Source:ZFIN;Acc:ZDB-GENE-040426-1937]
86. zgc:165571 zgc:165571 237.48 1779.99
87. fkbp1aa ENSDARG00000022684 230.69 1729.10 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
88. pcna ENSDARG00000054155 230.69 1729.10 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
89. rpl27 ENSDARG00000015128 230.69 1729.10 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
90. rpl6 ENSDARG00000058451 230.69 1729.10 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
91. rps13 ENSDARG00000036298, ENSDARG00000112818 230.69 1729.10 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
92. rps19 ENSDARG00000030602 230.69 1729.10 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
93. h3f3a 223.91 1678.28 H3 histone, family 3A, transcript variant X1
94. hsp90ab1 ENSDARG00000029150 223.91 1678.28 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
95. rpl24 ENSDARG00000099104 223.91 1678.28 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
96. ptmaa ENSDARG00000021113, ENSDARG00000110479 217.12 1627.39 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
97. si:dkeyp-86f7.3 si:dkeyp-86f7.3 217.12 1627.39
98. rpl39 ENSDARG00000036316, ENSDARG00000117167 210.34 1576.57 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
99. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 203.55 1525.68 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
100. im:7150988 ENSDARG00000109310 203.55 1525.68 im:7150988 [Source:ZFIN;Acc:ZDB-GENE-050309-169]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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