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Experiment Zebrafish_40hpf_whole_embryo2, section s61.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13227.48 99150.46
2. krt4 ENSDARG00000017624, ENSDARG00000115790 6487.33 48627.69 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1832.94 13739.34 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. col1a1a ENSDARG00000012405, ENSDARG00000116113 1524.50 11427.34 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
5. actb2 ENSDARG00000037870 1347.52 10100.73 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1307.07 9797.53 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. mt-co2 ENSDARG00000063908 781.21 5855.79 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. eef1a1l1 ENSDARG00000020850 763.51 5723.11 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. hmga1a ENSDARG00000028335 735.70 5514.66 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. mt-nd4 ENSDARG00000063917 692.72 5192.49 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-atp6 ENSDARG00000063911 687.67 5154.63 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-nd2 ENSDARG00000063899 682.61 5116.70 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. ppiaa ENSDARG00000009212 662.39 4965.14 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
14. mt-co3 ENSDARG00000063912 634.58 4756.68 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. ptmab ENSDARG00000101766 632.05 4737.72 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. id1 ENSDARG00000040764 614.35 4605.04 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
17. cfl1l ENSDARG00000012972 594.12 4453.40 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
18. zgc:112425 zgc:112425 589.07 4415.55
19. col1a1b ENSDARG00000035809 566.31 4244.94 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
20. ckma ENSDARG00000035327, ENSDARG00000114671 543.56 4074.41 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
21. si:dkey-151g10.6 si:dkey-151g10.6 543.56 4074.41
22. tpma ENSDARG00000033683 482.88 3619.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
23. zgc:92533 zgc:92533 457.60 3430.08
24. zgc:66286 zgc:66286 401.98 3013.16
25. icn ENSDARG00000009978 399.45 2994.19 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
26. actc1b ENSDARG00000099197 394.40 2956.34 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
27. cyt1l ENSDARG00000036832 384.28 2880.48 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
28. ckmb ENSDARG00000040565 379.23 2842.63 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
29. mt-nd1 ENSDARG00000063895 379.23 2842.63 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. eef2b ENSDARG00000100371, ENSDARG00000109247 374.17 2804.70 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
31. hspa8 ENSDARG00000068992, ENSDARG00000114726 353.95 2653.14 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
32. hmgn2 ENSDARG00000099572 346.36 2596.24 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
33. mt-cyb ENSDARG00000063924 333.72 2501.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. rpl8 ENSDARG00000014867 316.02 2368.82 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
35. and2 ENSDARG00000079302 313.50 2349.93 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
36. AL954137.2 ENSDARG00000114408 310.97 2330.97
37. krt8 ENSDARG00000058358, ENSDARG00000109279 310.97 2330.97 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
38. myl10 ENSDARG00000062592 305.91 2293.04 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
39. rplp1 ENSDARG00000021864 305.91 2293.04 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
40. pabpc1a ENSDARG00000017219 303.38 2274.07 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
41. rpl23 ENSDARG00000053457 300.85 2255.11 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. rps23 ENSDARG00000021838 298.33 2236.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
43. gch2 ENSDARG00000099101 288.21 2160.36 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
44. rpl26 ENSDARG00000102317 285.69 2141.47 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
45. and3 ENSDARG00000056873 283.16 2122.51 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
46. pfn1 ENSDARG00000088091 283.16 2122.51 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
47. rpl18a ENSDARG00000025073 278.10 2084.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
48. col1a2 ENSDARG00000020007 275.57 2065.62 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
49. fabp3 ENSDARG00000023290 275.57 2065.62 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
50. rpl10a ENSDARG00000042905, ENSDARG00000115649 273.04 2046.65 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
51. fkbp1aa ENSDARG00000022684 270.52 2027.76 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
52. tpm3 ENSDARG00000005162 270.52 2027.76 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
53. mylz3 ENSDARG00000017441 262.93 1970.87 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
54. and1 ENSDARG00000088514 260.40 1951.90 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 260.40 1951.90 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. rpl11 ENSDARG00000043509 252.82 1895.09 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
57. h3f3a 250.29 1876.12 H3 histone, family 3A, transcript variant X1
58. acta1a ENSDARG00000036371 242.71 1819.30 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
59. btf3 ENSDARG00000035400, ENSDARG00000116462 242.71 1819.30 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
60. rpsa ENSDARG00000019181 240.18 1800.34 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
61. rpl19 ENSDARG00000013307 230.07 1724.56 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
62. rpl36a ENSDARG00000058105, ENSDARG00000112656 230.07 1724.56 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
63. si:dkeyp-86f7.3 si:dkeyp-86f7.3 230.07 1724.56
64. rps27a ENSDARG00000032725, ENSDARG00000114059 225.01 1686.63 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. eif5a ENSDARG00000017235 222.48 1667.66 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. rps14 ENSDARG00000036629 217.42 1629.74 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
67. rps26l ENSDARG00000030408 217.42 1629.74 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
68. rpl9 ENSDARG00000037350, ENSDARG00000112384 214.90 1610.85 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
69. col2a1a ENSDARG00000069093, ENSDARG00000111202 212.37 1591.88 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
70. rps20 ENSDARG00000036044 212.37 1591.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
71. si:ch1073-429i10.3 212.37 1591.88 si:ch1073-429i10.3, transcript variant X2
72. rplp2 ENSDARG00000101406 207.31 1553.95 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
73. tnnc2 ENSDARG00000070835, ENSDARG00000111155 207.31 1553.95 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
74. hnrnpab hnrnpab 204.78 1534.99
75. rps27.1 ENSDARG00000023298 199.73 1497.13 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
76. rps4x ENSDARG00000014690 194.67 1459.21 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
77. myhz2 ENSDARG00000012944 192.14 1440.24 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
78. sparc ENSDARG00000019353 192.14 1440.24 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
79. atp2a1 ENSDARG00000020574 187.09 1402.39 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
80. rps19 ENSDARG00000030602 187.09 1402.39 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
81. rps2 ENSDARG00000077291 187.09 1402.39 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
82. hsp90ab1 ENSDARG00000029150 184.56 1383.42 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
83. rps6 ENSDARG00000019778 184.56 1383.42 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
84. myl12.1 ENSDARG00000099766 182.03 1364.46 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
85. rpl7 ENSDARG00000007320 182.03 1364.46 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
86. rps15 ENSDARG00000070849, ENSDARG00000110979 182.03 1364.46 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
87. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 182.03 1364.46 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
88. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 176.97 1326.53 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
89. rpl15 ENSDARG00000009285 176.97 1326.53 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
90. rplp0 ENSDARG00000051783 176.97 1326.53 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
91. hoxc12a ENSDARG00000070352 174.44 1307.57 homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
92. smyhc1 ENSDARG00000099959, ENSDARG00000115916 174.44 1307.57 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
93. rps12 ENSDARG00000036875, ENSDARG00000115157 171.92 1288.68 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
94. rpl36 ENSDARG00000100588 169.39 1269.71 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
95. rpl5b ENSDARG00000015862, ENSDARG00000109661 166.86 1250.75 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
96. rps15a ENSDARG00000010160 166.86 1250.75 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
97. rplp2l ENSDARG00000011201 164.33 1231.78 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
98. CABZ01074130.1 ENSDARG00000105274 161.80 1212.82
99. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 161.80 1212.82 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 161.80 1212.82 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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