Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_40hpf_whole_embryo2, section s60.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11978.52 89794.57
2. krt4 ENSDARG00000017624, ENSDARG00000115790 6333.92 47480.96 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1888.89 14159.68 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. actb2 ENSDARG00000037870 1476.77 11070.31 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. col1a1a ENSDARG00000012405, ENSDARG00000116113 1388.46 10408.31 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
6. actb1 ENSDARG00000037746, ENSDARG00000113649 1113.71 8348.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. mt-co2 ENSDARG00000063908 799.71 5994.87 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mt-nd4 ENSDARG00000063917 721.21 5406.41 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. tpma ENSDARG00000033683 708.95 5314.50 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
10. hmga1a ENSDARG00000028335 694.23 5204.16 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. mt-nd2 ENSDARG00000063899 694.23 5204.16 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. eef1a1l1 ENSDARG00000020850 681.96 5112.18 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. mt-co3 ENSDARG00000063912 640.26 4799.58 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. ptmab ENSDARG00000101766 610.82 4578.89 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
15. ckma ENSDARG00000035327, ENSDARG00000114671 601.01 4505.35 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
16. zgc:112425 zgc:112425 547.04 4100.78
17. ppiaa ENSDARG00000009212 527.42 3953.70 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
18. col1a1b ENSDARG00000035809 520.06 3898.53 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
19. ckmb ENSDARG00000040565 512.70 3843.35 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
20. si:dkey-151g10.6 si:dkey-151g10.6 488.17 3659.47
21. id1 ENSDARG00000040764 473.45 3549.12 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
22. mt-atp6 ENSDARG00000063911 458.73 3438.78 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. hspa8 ENSDARG00000068992, ENSDARG00000114726 453.82 3401.97 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
24. actc1b ENSDARG00000099197 451.37 3383.60 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
25. zgc:92533 zgc:92533 441.56 3310.07
26. cfl1l ENSDARG00000012972 412.12 3089.37 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
27. zgc:66286 zgc:66286 404.76 3034.20
28. mylz3 ENSDARG00000017441 402.31 3015.84 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
29. atp2a1 ENSDARG00000020574 380.23 2850.32 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
30. cyt1l ENSDARG00000036832 350.79 2629.63 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 348.34 2611.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. hmgn2 ENSDARG00000099572 336.08 2519.36 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
33. krt8 ENSDARG00000058358, ENSDARG00000109279 321.36 2409.01 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
34. rpl8 ENSDARG00000014867 311.54 2335.40 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
35. pabpc1a ENSDARG00000017219 309.09 2317.03 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
36. tnnc2 ENSDARG00000070835, ENSDARG00000111155 309.09 2317.03 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
37. AL954137.2 ENSDARG00000114408 306.64 2298.67
38. col1a2 ENSDARG00000020007 306.64 2298.67 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
39. rpl18a ENSDARG00000025073 306.64 2298.67 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
40. rpl26 ENSDARG00000102317 301.73 2261.86 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
41. myhz2 ENSDARG00000012944 299.28 2243.49 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
42. myl10 ENSDARG00000062592 299.28 2243.49 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
43. mt-cyb ENSDARG00000063924 296.83 2225.13 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 294.37 2206.69 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rpl9 ENSDARG00000037350, ENSDARG00000112384 294.37 2206.69 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
46. icn ENSDARG00000009978 287.01 2151.51 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 284.56 2133.15 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. tpm3 ENSDARG00000005162 279.65 2096.34 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
49. hbbe1.1 ENSDARG00000113599 274.75 2059.61 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 267.39 2004.44 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. mt-nd1 ENSDARG00000063895 264.94 1986.07 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
52. pfn1 ENSDARG00000088091 262.48 1967.63 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
53. acta1a ENSDARG00000036371 257.58 1930.90 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. col2a1a ENSDARG00000069093, ENSDARG00000111202 257.58 1930.90 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
55. rpl23 ENSDARG00000053457 257.58 1930.90 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
56. rps23 ENSDARG00000021838 255.12 1912.46 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
57. and3 ENSDARG00000056873 250.22 1875.72 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
58. rps14 ENSDARG00000036629 235.50 1765.38 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
59. si:dkeyp-86f7.3 si:dkeyp-86f7.3 235.50 1765.38
60. rpsa ENSDARG00000019181 233.05 1747.01 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
61. si:ch1073-429i10.3 228.14 1710.21 si:ch1073-429i10.3, transcript variant X2
62. fkbp1aa ENSDARG00000022684 225.69 1691.84 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
63. rpl11 ENSDARG00000043509 225.69 1691.84 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
64. rps27a ENSDARG00000032725, ENSDARG00000114059 225.69 1691.84 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. gch2 ENSDARG00000099101 223.23 1673.40 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
66. rpl19 ENSDARG00000013307 218.33 1636.67 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rplp1 ENSDARG00000021864 218.33 1636.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
68. rps15a ENSDARG00000010160 203.61 1526.32 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. col9a1 col9a1 201.15 1507.88
70. hbbe3 ENSDARG00000038147, ENSDARG00000109344 201.15 1507.88 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
71. icn2 ENSDARG00000055514 201.15 1507.88 ictacalcin 2 [Source:ZFIN;Acc:ZDB-GENE-070822-9]
72. rps20 ENSDARG00000036044 198.70 1489.51 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
73. rpl27 ENSDARG00000015128 196.25 1471.15 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
74. eif5a ENSDARG00000017235 193.80 1452.78 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
75. col11a1a ENSDARG00000026165, ENSDARG00000115341 191.34 1434.34 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
76. hbae3 ENSDARG00000079305 191.34 1434.34 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
77. rpl36a ENSDARG00000058105, ENSDARG00000112656 188.89 1415.98 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
78. ttna ttna 188.89 1415.98
79. and2 ENSDARG00000079302 186.44 1397.61 actinodin2 [Source:ZFIN;Acc:ZDB-GENE-041105-2]
80. rps19 ENSDARG00000030602 186.44 1397.61 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
81. fabp3 ENSDARG00000023290 181.53 1360.80 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
82. myl12.1 ENSDARG00000099766 181.53 1360.80 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
83. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 181.53 1360.80 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
84. rps26l ENSDARG00000030408 181.53 1360.80 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
85. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 181.53 1360.80 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
86. hoxc12a ENSDARG00000070352 179.08 1342.44 homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
87. postnb ENSDARG00000104267 179.08 1342.44 periostin, osteoblast specific factor b [Source:ZFIN;Acc:ZDB-GENE-030131-9120]
88. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 176.62 1324.00 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
89. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 176.62 1324.00 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
90. hnrnpab hnrnpab 174.17 1305.63
91. mt-co1 ENSDARG00000063905 174.17 1305.63 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
92. pcna ENSDARG00000054155 171.72 1287.26 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
93. zgc:165571 zgc:165571 171.72 1287.26
94. zgc:123194 zgc:123194 169.26 1268.82
95. and1 ENSDARG00000088514 166.81 1250.46 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
96. cd81 cd81 166.81 1250.46
97. h3f3a 166.81 1250.46 H3 histone, family 3A, transcript variant X1
98. hsp90ab1 ENSDARG00000029150 166.81 1250.46 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
99. rps2 ENSDARG00000077291 166.81 1250.46 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
100. ahnak ENSDARG00000061764 161.91 1213.73 AHNAK nucleoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-8719]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA