Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s59.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14370.74 107719.48
2. krt4 ENSDARG00000017624, ENSDARG00000115790 6436.11 48243.47 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1746.25 13089.45 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. actb2 ENSDARG00000037870 1335.80 10012.82 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. col1a1a ENSDARG00000012405, ENSDARG00000116113 1192.50 8938.68 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
6. mt-co2 ENSDARG00000063908 1056.49 7919.19 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. tpma ENSDARG00000033683 1017.63 7627.90 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. mt-nd2 ENSDARG00000063899 942.34 7063.55 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 888.91 6663.05 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. mt-nd4 ENSDARG00000063917 876.77 6572.05 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. ckma ENSDARG00000035327, ENSDARG00000114671 806.34 6044.12 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. ckmb ENSDARG00000040565 762.62 5716.41 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
13. mt-co3 ENSDARG00000063912 750.47 5625.34 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-atp6 ENSDARG00000063911 689.76 5170.27 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
15. hmga1a ENSDARG00000028335 667.90 5006.41 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
16. eef1a1l1 ENSDARG00000020850 616.90 4624.13 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. actc1b ENSDARG00000099197 587.75 4405.63 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. col1a1b ENSDARG00000035809 573.18 4296.41 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
19. zgc:112425 zgc:112425 568.32 4259.98
20. ptmab ENSDARG00000101766 561.03 4205.34 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
21. ppiaa ENSDARG00000009212 524.60 3932.27 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
22. si:dkey-151g10.6 si:dkey-151g10.6 488.17 3659.20
23. mylz3 ENSDARG00000017441 451.74 3386.13 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
24. zgc:66286 zgc:66286 449.31 3367.92
25. zgc:92533 zgc:92533 444.46 3331.56
26. mt-nd1 ENSDARG00000063895 437.17 3276.92 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. id1 ENSDARG00000040764 429.88 3222.27 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
28. atp2a1 ENSDARG00000020574 427.45 3204.06 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 427.45 3204.06 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. eef2b ENSDARG00000100371, ENSDARG00000109247 388.60 2912.85 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
31. mt-cyb ENSDARG00000063924 366.74 2748.99 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. myhz2 ENSDARG00000012944 361.88 2712.56 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
33. cyt1l ENSDARG00000036832 354.59 2657.92 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
34. cfl1l ENSDARG00000012972 340.02 2548.70 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
35. myl10 ENSDARG00000062592 335.16 2512.28 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
36. tnnc2 ENSDARG00000070835, ENSDARG00000111155 323.02 2421.28 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
37. rpl8 ENSDARG00000014867 318.16 2384.85 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
38. tpm3 ENSDARG00000005162 310.88 2330.28 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
39. col1a2 ENSDARG00000020007 308.45 2312.06 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
40. hbae3 ENSDARG00000079305 306.02 2293.85 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 303.59 2275.63 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. icn ENSDARG00000009978 303.59 2275.63 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
43. acta1a ENSDARG00000036371 301.16 2257.42 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
44. rpl10a ENSDARG00000042905, ENSDARG00000115649 301.16 2257.42 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
45. hbbe1.1 ENSDARG00000113599 298.73 2239.21 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
46. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 279.30 2093.56 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
47. gch2 ENSDARG00000099101 276.87 2075.35 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
48. rplp1 ENSDARG00000021864 259.87 1947.92 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
49. rpl18a ENSDARG00000025073 257.44 1929.71 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
50. rps23 ENSDARG00000021838 257.44 1929.71 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
51. ttna ttna 255.02 1911.57
52. rpl21 ENSDARG00000010516, ENSDARG00000110263 252.59 1893.35 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
53. col2a1a ENSDARG00000069093, ENSDARG00000111202 247.73 1856.92 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
54. rpl11 ENSDARG00000043509 242.87 1820.49 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rpl23 ENSDARG00000053457 242.87 1820.49 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
56. hbbe3 ENSDARG00000038147, ENSDARG00000109344 233.16 1747.71 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
57. hmgn2 ENSDARG00000099572 230.73 1729.49 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
58. krt8 ENSDARG00000058358, ENSDARG00000109279 230.73 1729.49 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
59. rpl26 ENSDARG00000102317 228.30 1711.28 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
60. rpsa ENSDARG00000019181 228.30 1711.28 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
61. smyhc1 ENSDARG00000099959, ENSDARG00000115916 225.87 1693.07 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
62. AL954137.2 ENSDARG00000114408 223.44 1674.85
63. pfn1 ENSDARG00000088091 223.44 1674.85 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
64. si:ch1073-429i10.3 223.44 1674.85 si:ch1073-429i10.3, transcript variant X2
65. rps20 ENSDARG00000036044 218.58 1638.42 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
66. fkbp1aa ENSDARG00000022684 216.16 1620.28 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
67. tnnt3a ENSDARG00000030270 211.30 1583.85 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
68. pabpc1a ENSDARG00000017219 206.44 1547.42 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
69. rplp0 ENSDARG00000051783 206.44 1547.42 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
70. rps12 ENSDARG00000036875, ENSDARG00000115157 204.01 1529.21 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
71. si:dkeyp-86f7.3 si:dkeyp-86f7.3 199.16 1492.85
72. rps14 ENSDARG00000036629 196.73 1474.64 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
73. pvalb2 ENSDARG00000002768, ENSDARG00000114085 191.87 1438.21 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
74. rpl36a ENSDARG00000058105, ENSDARG00000112656 191.87 1438.21 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
75. and3 ENSDARG00000056873 189.44 1419.99 actinodin3 [Source:ZFIN;Acc:ZDB-GENE-040724-185]
76. zgc:113413 zgc:113413 189.44 1419.99
77. rpl19 ENSDARG00000013307 184.58 1383.57 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
78. col5a1 ENSDARG00000012593 182.15 1365.35 procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
79. rpl9 ENSDARG00000037350, ENSDARG00000112384 182.15 1365.35 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
80. aldoaa ENSDARG00000011665 177.30 1329.00 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
81. col9a1 col9a1 177.30 1329.00
82. sparc ENSDARG00000019353 177.30 1329.00 secreted protein, acidic, cysteine-rich (osteonectin) [Source:ZFIN;Acc:ZDB-GENE-030131-9]
83. zgc:123194 zgc:123194 177.30 1329.00
84. pvalb4 ENSDARG00000024433 174.87 1310.78 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
85. rps27a ENSDARG00000032725, ENSDARG00000114059 174.87 1310.78 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
86. rpl27 ENSDARG00000015128 172.44 1292.57 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
87. rps2 ENSDARG00000077291 172.44 1292.57 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
88. rps26l ENSDARG00000030408 172.44 1292.57 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
89. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 172.44 1292.57 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
90. rps4x ENSDARG00000014690 170.01 1274.35 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
91. pcna ENSDARG00000054155 167.58 1256.14 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
92. rps9 ENSDARG00000011405, ENSDARG00000113248 167.58 1256.14 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
93. cirbp cirbp 165.15 1237.92
94. h3f3a 165.15 1237.92 H3 histone, family 3A, transcript variant X1
95. rpl18 ENSDARG00000029533 162.72 1219.71 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. rps27.1 ENSDARG00000023298 162.72 1219.71 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
97. cd81 cd81 160.30 1201.57
98. ATP5B 157.87 1183.35 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
99. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 157.87 1183.35 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
100. myl12.1 ENSDARG00000099766 157.87 1183.35 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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