Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s57.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15255.42 114350.30
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5859.90 43924.15 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 1844.67 13827.12 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. tmsb4x ENSDARG00000077777 1391.70 10431.79 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. ckma ENSDARG00000035327, ENSDARG00000114671 1299.47 9740.46 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. actb2 ENSDARG00000037870 1248.23 9356.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. ckmb ENSDARG00000040565 1227.73 9202.72 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. mt-nd2 ENSDARG00000063899 1043.26 7819.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. actc1b ENSDARG00000099197 975.63 7313.05 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. mylz3 ENSDARG00000017441 975.63 7313.05 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
11. mt-nd4 ENSDARG00000063917 969.48 7266.95 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. mt-co2 ENSDARG00000063908 932.58 6990.36 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. actb1 ENSDARG00000037746, ENSDARG00000113649 901.84 6759.94 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
14. col1a1a ENSDARG00000012405, ENSDARG00000116113 899.79 6744.57 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
15. mt-atp6 ENSDARG00000063911 819.85 6145.36 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. myhz2 ENSDARG00000012944 756.31 5669.09 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
17. atp2a1 ENSDARG00000020574 746.07 5592.33 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
18. mt-co3 ENSDARG00000063912 703.02 5269.64 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. eef1a1l1 ENSDARG00000020850 700.97 5254.27 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. tnnc2 ENSDARG00000070835, ENSDARG00000111155 610.79 4578.31 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
21. pvalb2 ENSDARG00000002768, ENSDARG00000114085 586.19 4393.91 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
22. hmga1a ENSDARG00000028335 578.00 4332.52 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
23. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 575.95 4317.16 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
24. zgc:112425 zgc:112425 532.90 3994.47
25. mt-nd1 ENSDARG00000063895 514.46 3856.25 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
26. mt-cyb ENSDARG00000063924 500.11 3748.68 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. ppiaa ENSDARG00000009212 475.51 3564.29 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
28. si:dkey-151g10.6 si:dkey-151g10.6 473.47 3549.00
29. ptmab ENSDARG00000101766 452.97 3395.33 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
30. zgc:66286 zgc:66286 436.57 3272.40
31. zgc:92533 zgc:92533 428.37 3210.94
32. col1a1b ENSDARG00000035809 403.78 3026.62 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
33. acta1a ENSDARG00000036371 389.43 2919.06 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
34. eef2b ENSDARG00000100371, ENSDARG00000109247 375.08 2811.49 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
35. cfl1l ENSDARG00000012972 373.03 2796.13 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
36. myl10 ENSDARG00000062592 373.03 2796.13 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 364.83 2734.66 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. tnnt3a ENSDARG00000030270 346.39 2596.44 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
39. rpl10a ENSDARG00000042905, ENSDARG00000115649 334.09 2504.24 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
40. ttna ttna 307.44 2304.48
41. acta1b ENSDARG00000055618 305.40 2289.19 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
42. tpm3 ENSDARG00000005162 303.35 2273.83 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
43. id1 ENSDARG00000040764 299.25 2243.09 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 297.20 2227.73 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rpl23 ENSDARG00000053457 291.05 2181.63 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. rpl26 ENSDARG00000102317 284.90 2135.53 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
47. col2a1a ENSDARG00000069093, ENSDARG00000111202 276.70 2074.06 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
48. rpl18a ENSDARG00000025073 274.65 2058.70 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
49. tnni2a.4 ENSDARG00000029069 274.65 2058.70 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
50. cyt1l ENSDARG00000036832 266.45 1997.23 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
51. rpl8 ENSDARG00000014867 264.40 1981.87 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. pvalb1 ENSDARG00000037789 262.35 1966.50 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
53. rps26l ENSDARG00000030408 254.15 1905.04 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
54. hmgn2 ENSDARG00000099572 252.10 1889.67 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
55. hbbe1.1 ENSDARG00000113599 250.06 1874.38 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
56. fabp3 ENSDARG00000023290 245.96 1843.65 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
57. krt8 ENSDARG00000058358, ENSDARG00000109279 245.96 1843.65 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
58. ttnb ttnb 243.91 1828.28
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 239.81 1797.55 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. pabpc1a ENSDARG00000017219 237.76 1782.18 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
61. tnnt3b ENSDARG00000068457 235.71 1766.82 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
62. icn ENSDARG00000009978 233.66 1751.45 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
63. rps14 ENSDARG00000036629 231.61 1736.08 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
64. rps23 ENSDARG00000021838 231.61 1736.08 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
65. rplp1 ENSDARG00000021864 227.51 1705.35 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. gch2 ENSDARG00000099101 225.46 1689.98 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
67. rpl21 ENSDARG00000010516, ENSDARG00000110263 225.46 1689.98 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
68. rpl11 ENSDARG00000043509 223.41 1674.62 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
69. rpl36a ENSDARG00000058105, ENSDARG00000112656 223.41 1674.62 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
70. pvalb4 ENSDARG00000024433 217.26 1628.52 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
71. hbae3 ENSDARG00000079305 215.21 1613.15 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
72. rps27a ENSDARG00000032725, ENSDARG00000114059 213.16 1597.79 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
73. myl1 ENSDARG00000014196 209.06 1567.05 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
74. ATP5B 204.96 1536.32 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
75. rpl19 ENSDARG00000013307 198.81 1490.22 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
76. rpsa ENSDARG00000019181 194.72 1459.57 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
77. mt-co1 ENSDARG00000063905 192.67 1444.20 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
78. si:ch211-226o13.2 192.67 1444.20 si:ch211-226o13.2
79. pfn1 ENSDARG00000088091 190.62 1428.83 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
80. smyhc1 ENSDARG00000099959, ENSDARG00000115916 188.57 1413.47 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
81. fkbp1aa ENSDARG00000022684 186.52 1398.10 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
82. rps4x ENSDARG00000014690 182.42 1367.37 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
83. col1a2 ENSDARG00000020007 180.37 1352.00 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
84. rps20 ENSDARG00000036044 180.37 1352.00 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
85. si:ch1073-429i10.3 176.27 1321.27 si:ch1073-429i10.3, transcript variant X2
86. atp5g3b 174.22 1305.90 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
87. myl12.1 ENSDARG00000099766 174.22 1305.90 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
88. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 174.22 1305.90 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
89. hsp90ab1 ENSDARG00000029150 172.17 1290.54 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
90. rpl27 ENSDARG00000015128 172.17 1290.54 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
91. si:dkeyp-86f7.3 si:dkeyp-86f7.3 172.17 1290.54
92. rplp2 ENSDARG00000101406 168.07 1259.81 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
93. rps2 ENSDARG00000077291 168.07 1259.81 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
94. AL954137.2 ENSDARG00000114408 166.02 1244.44
95. cd81 cd81 166.02 1244.44
96. rplp0 ENSDARG00000051783 163.97 1229.07 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. si:dkey-150i13.2 ENSDARG00000071052 163.97 1229.07 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
98. rpl36 ENSDARG00000100588 157.82 1182.97 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
99. hbbe3 ENSDARG00000038147, ENSDARG00000109344 155.77 1167.61 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
100. hnrnpab hnrnpab 155.77 1167.61
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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