Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s56.

Sample reads: 133,386. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11750.63 88094.96
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5288.86 39650.80 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2194.53 16452.48 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. tmsb4x ENSDARG00000077777 1583.52 11871.72 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. ckma ENSDARG00000035327, ENSDARG00000114671 1489.21 11164.67 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. ckmb ENSDARG00000040565 1414.56 10605.01 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mylz3 ENSDARG00000017441 1298.64 9735.96 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. actb2 ENSDARG00000037870 1261.31 9456.09 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. actc1b ENSDARG00000099197 1200.41 8999.52 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. mt-co2 ENSDARG00000063908 1149.33 8616.57 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. mt-nd2 ENSDARG00000063899 1139.50 8542.88 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. col1a1a ENSDARG00000012405, ENSDARG00000116113 941.07 7055.24 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
13. mt-nd4 ENSDARG00000063917 933.21 6996.31 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. actb1 ENSDARG00000037746, ENSDARG00000113649 858.56 6436.66 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
15. mt-co3 ENSDARG00000063912 856.59 6421.89 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. atp2a1 ENSDARG00000020574 848.73 6362.96 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
17. myhz2 ENSDARG00000012944 813.37 6097.87 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
18. pvalb2 ENSDARG00000002768, ENSDARG00000114085 811.40 6083.10 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
19. si:dkey-151g10.6 si:dkey-151g10.6 750.50 5626.53
20. tnnc2 ENSDARG00000070835, ENSDARG00000111155 742.64 5567.60 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
21. mt-atp6 ENSDARG00000063911 740.68 5552.91 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
22. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 673.88 5052.11 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
23. eef1a1l1 ENSDARG00000020850 671.91 5037.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. mt-nd1 ENSDARG00000063895 622.80 4669.16 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. ppiaa ENSDARG00000009212 585.47 4389.29 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. acta1a ENSDARG00000036371 532.42 3991.57 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. pvalb1 ENSDARG00000037789 516.71 3873.80 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
28. zgc:66286 zgc:66286 497.06 3726.48
29. hmga1a ENSDARG00000028335 491.17 3682.32 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
30. mt-cyb ENSDARG00000063924 465.62 3490.77 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. tnnt3a ENSDARG00000030270 451.87 3387.69 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
32. rpl8 ENSDARG00000014867 442.05 3314.07 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
33. zgc:112425 zgc:112425 416.51 3122.59
34. ptmab ENSDARG00000101766 398.83 2990.05 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
35. cfl1l ENSDARG00000012972 394.90 2960.58 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
36. acta1b ENSDARG00000055618 387.04 2901.65 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
37. tnni2a.4 ENSDARG00000029069 383.11 2872.19 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
38. col1a1b ENSDARG00000035809 365.43 2739.64 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
39. rplp1 ENSDARG00000021864 361.50 2710.18 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
40. zgc:92533 zgc:92533 361.50 2710.18
41. myl10 ENSDARG00000062592 355.60 2665.95 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. hspa8 ENSDARG00000068992, ENSDARG00000114726 345.78 2592.33 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
43. rpl26 ENSDARG00000102317 341.85 2562.86 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 339.89 2548.17 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. id1 ENSDARG00000040764 339.89 2548.17 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
46. eef2b ENSDARG00000100371, ENSDARG00000109247 335.96 2518.71 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
47. rpl11 ENSDARG00000043509 320.24 2400.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
48. rpl10a ENSDARG00000042905, ENSDARG00000115649 318.27 2386.08 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
49. rps23 ENSDARG00000021838 314.35 2356.69 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. icn ENSDARG00000009978 306.49 2297.77 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
51. rpl18a ENSDARG00000025073 300.59 2253.54 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
52. rpl23 ENSDARG00000053457 300.59 2253.54 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 292.73 2194.61 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. tnnt3b ENSDARG00000068457 290.77 2179.91 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
55. cyt1l ENSDARG00000036832 288.81 2165.22 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 280.95 2106.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. hmgn2 ENSDARG00000099572 278.98 2091.52 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
58. tpm3 ENSDARG00000005162 278.98 2091.52 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
59. rps26l ENSDARG00000030408 277.02 2076.83 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
60. myl1 ENSDARG00000014196 271.12 2032.60 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
61. rpl9 ENSDARG00000037350, ENSDARG00000112384 267.19 2003.13 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
62. pvalb4 ENSDARG00000024433 261.30 1958.98 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
63. hbae3 ENSDARG00000079305 251.48 1885.36 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
64. rps14 ENSDARG00000036629 249.51 1870.59 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
65. rps27a ENSDARG00000032725, ENSDARG00000114059 247.55 1855.89 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. col2a1a ENSDARG00000069093, ENSDARG00000111202 241.65 1811.66 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
67. rpl19 ENSDARG00000013307 237.72 1782.20 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. ttna ttna 237.72 1782.20
69. ATP5B 233.79 1752.73 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
70. rps4x ENSDARG00000014690 231.83 1738.04 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
71. pabpc1a ENSDARG00000017219 229.87 1723.34 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
72. eif5a ENSDARG00000017235 227.90 1708.58 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. fkbp1aa ENSDARG00000022684 222.01 1664.42 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
74. rps12 ENSDARG00000036875, ENSDARG00000115157 222.01 1664.42 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
75. hbbe1.1 ENSDARG00000113599 220.04 1649.65 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
76. rpl27 ENSDARG00000015128 220.04 1649.65 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
77. si:ch211-226o13.2 220.04 1649.65 si:ch211-226o13.2
78. rpsa ENSDARG00000019181 216.11 1620.19 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
79. fabp3 ENSDARG00000023290 214.15 1605.49 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. rpl15 ENSDARG00000009285 212.18 1590.72 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
81. pfn1 ENSDARG00000088091 210.22 1576.03 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
82. mylpfb ENSDARG00000002589 204.32 1531.80 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
83. rps2 ENSDARG00000077291 204.32 1531.80 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. rpl18 ENSDARG00000029533 202.36 1517.10 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. rpl36 ENSDARG00000100588 202.36 1517.10 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
86. AL954137.2 ENSDARG00000114408 198.43 1487.64
87. gch2 ENSDARG00000099101 198.43 1487.64 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
88. rpl14 ENSDARG00000103433 198.43 1487.64 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
89. rpl7 ENSDARG00000007320 198.43 1487.64 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
90. krt8 ENSDARG00000058358, ENSDARG00000109279 196.47 1472.94 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 194.50 1458.17 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. col1a2 ENSDARG00000020007 192.54 1443.48 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
93. rps19 ENSDARG00000030602 192.54 1443.48 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. rps5 ENSDARG00000043453 192.54 1443.48 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
95. h3f3a 188.61 1414.02 H3 histone, family 3A, transcript variant X1
96. rps20 ENSDARG00000036044 188.61 1414.02 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
97. rplp0 ENSDARG00000051783 186.64 1399.25 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. rps15 ENSDARG00000070849, ENSDARG00000110979 180.75 1355.09 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
99. rps9 ENSDARG00000011405, ENSDARG00000113248 180.75 1355.09 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
100. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 180.75 1355.09 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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