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Experiment Zebrafish_40hpf_whole_embryo2, section s55.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 14556.88 109121.47
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4726.13 35428.08 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2584.68 19375.31 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 1532.22 11485.85 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 1489.05 11162.24 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. actc1b ENSDARG00000099197 1256.65 9420.12 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
7. mylz3 ENSDARG00000017441 1240.05 9295.68 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. mt-nd2 ENSDARG00000063899 1203.53 9021.92 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. tmsb4x ENSDARG00000077777 1039.18 7789.91 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. actb2 ENSDARG00000037870 1014.28 7603.26 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. mt-nd4 ENSDARG00000063917 972.78 7292.17 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. myhz2 ENSDARG00000012944 932.94 6993.52 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
13. mt-co2 ENSDARG00000063908 919.66 6893.97 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
14. atp2a1 ENSDARG00000020574 909.70 6819.31 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. pvalb2 ENSDARG00000002768, ENSDARG00000114085 888.12 6657.54 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 821.72 6159.79 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. mt-co3 ENSDARG00000063912 793.50 5948.25 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. eef1a1l1 ENSDARG00000020850 790.18 5923.36 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 768.60 5761.59 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. mt-atp6 ENSDARG00000063911 765.28 5736.70 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 760.30 5699.37 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. col1a1a ENSDARG00000012405, ENSDARG00000116113 690.58 5176.73 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
23. tnnt3a ENSDARG00000030270 590.97 4430.04 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
24. acta1a ENSDARG00000036371 544.49 4081.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. ppiaa ENSDARG00000009212 493.03 3695.86 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. si:dkey-151g10.6 si:dkey-151g10.6 481.41 3608.75
27. acta1b ENSDARG00000055618 476.43 3571.42 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
28. mt-nd1 ENSDARG00000063895 461.49 3459.43 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. zgc:66286 zgc:66286 461.49 3459.43
30. zgc:112425 zgc:112425 448.21 3359.88
31. pvalb1 ENSDARG00000037789 436.59 3272.77 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
32. tnni2a.4 ENSDARG00000029069 431.61 3235.44 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
33. hmga1a ENSDARG00000028335 416.67 3123.45 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
34. mt-cyb ENSDARG00000063924 390.11 2924.35 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. myl1 ENSDARG00000014196 371.85 2787.47 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
36. col1a1b ENSDARG00000035809 333.67 2501.26 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
37. ptmab ENSDARG00000101766 333.67 2501.26 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 330.35 2476.37 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. rpl8 ENSDARG00000014867 322.05 2414.16 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 320.39 2401.71 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. myl10 ENSDARG00000062592 310.43 2327.05 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. rpl23 ENSDARG00000053457 310.43 2327.05 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
43. rpl26 ENSDARG00000102317 310.43 2327.05 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. id1 ENSDARG00000040764 308.77 2314.61 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
45. tnnt3b ENSDARG00000068457 308.77 2314.61 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
46. cfl1l ENSDARG00000012972 302.13 2264.83 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
47. rpl10a ENSDARG00000042905, ENSDARG00000115649 297.15 2227.50 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
48. rps23 ENSDARG00000021838 293.83 2202.61 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 288.85 2165.28 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. ttna ttna 287.19 2152.84
51. pvalb4 ENSDARG00000024433 283.87 2127.95 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
52. rplp1 ENSDARG00000021864 278.89 2090.62 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. ATP5B 267.27 2003.51 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
54. rpl11 ENSDARG00000043509 263.95 1978.63 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rpl9 ENSDARG00000037350, ENSDARG00000112384 257.31 1928.85 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
56. rpl18a ENSDARG00000025073 255.65 1916.41 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
57. hmgn2 ENSDARG00000099572 253.99 1903.96 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
58. zgc:92533 zgc:92533 252.33 1891.52
59. tpm3 ENSDARG00000005162 250.67 1879.08 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 242.37 1816.86 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. AL954137.2 ENSDARG00000114408 240.71 1804.41
62. rps2 ENSDARG00000077291 239.05 1791.97 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
63. ttnb ttnb 229.09 1717.31
64. hbae3 ENSDARG00000079305 227.43 1704.86 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
65. rpl36a ENSDARG00000058105, ENSDARG00000112656 225.77 1692.42 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
66. rps12 ENSDARG00000036875, ENSDARG00000115157 224.11 1679.98 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
67. myhz1.3 ENSDARG00000067997 219.13 1642.65 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
68. si:ch211-226o13.2 219.13 1642.65 si:ch211-226o13.2
69. cyt1l ENSDARG00000036832 217.47 1630.20 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
70. hbbe1.1 ENSDARG00000113599 215.81 1617.76 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
71. fkbp1aa ENSDARG00000022684 209.16 1567.91 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
72. rpl19 ENSDARG00000013307 209.16 1567.91 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. rps27a ENSDARG00000032725, ENSDARG00000114059 207.50 1555.46 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
74. rpsa ENSDARG00000019181 207.50 1555.46 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
75. rps14 ENSDARG00000036629 205.84 1543.02 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
76. rps27.1 ENSDARG00000023298 205.84 1543.02 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
77. smyhc1 ENSDARG00000099959, ENSDARG00000115916 205.84 1543.02 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
78. rplp0 ENSDARG00000051783 204.18 1530.58 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. col2a1a ENSDARG00000069093, ENSDARG00000111202 202.52 1518.13 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
80. h3f3a 190.90 1431.03 H3 histone, family 3A, transcript variant X1
81. aldoab ENSDARG00000034470 189.24 1418.58 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
82. rpl15 ENSDARG00000009285 189.24 1418.58 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
83. mylpfb ENSDARG00000002589 187.58 1406.14 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
84. pabpc1a ENSDARG00000017219 187.58 1406.14 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
85. icn ENSDARG00000009978 185.92 1393.70 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
86. rps26l ENSDARG00000030408 185.92 1393.70 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
87. mt-co1 ENSDARG00000063905 184.26 1381.25 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
88. pfn1 ENSDARG00000088091 182.60 1368.81 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
89. rpl7 ENSDARG00000007320 182.60 1368.81 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
90. zgc:113413 zgc:113413 180.94 1356.36
91. rpl27 ENSDARG00000015128 179.28 1343.92 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
92. col11a1a ENSDARG00000026165, ENSDARG00000115341 175.96 1319.03 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
93. RPL29 ENSDARG00000077717 174.30 1306.59 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
94. eif5a ENSDARG00000017235 174.30 1306.59 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
95. hnrnpab hnrnpab 174.30 1306.59
96. si:dkeyp-86f7.3 si:dkeyp-86f7.3 174.30 1306.59
97. gch2 ENSDARG00000099101 172.64 1294.15 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 172.64 1294.15 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. rpl36 ENSDARG00000100588 172.64 1294.15 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
100. gapdh ENSDARG00000043457 170.98 1281.70 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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