Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s54.

Sample reads: 133,419. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9874.48 74010.89
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4938.08 37011.74 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2435.33 18253.21 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 1719.06 12884.64 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 1466.26 10989.87 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-nd2 ENSDARG00000063899 1355.02 10156.10 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mylz3 ENSDARG00000017441 1351.65 10130.84 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
8. actc1b ENSDARG00000099197 1270.76 9524.56 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. actb2 ENSDARG00000037870 1267.39 9499.30 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. mt-nd4 ENSDARG00000063917 1248.85 9360.34 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-co2 ENSDARG00000063908 1167.95 8753.98 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. tmsb4x ENSDARG00000077777 1139.30 8539.25 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. atp2a1 ENSDARG00000020574 1127.50 8450.80 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. pvalb2 ENSDARG00000002768, ENSDARG00000114085 987.62 7402.38 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
15. mt-atp6 ENSDARG00000063911 908.40 6808.61 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. mt-co3 ENSDARG00000063912 878.07 6581.28 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. eef1a1l1 ENSDARG00000020850 830.88 6227.59 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. myhz2 ENSDARG00000012944 824.14 6177.07 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
19. tnnc2 ENSDARG00000070835, ENSDARG00000111155 812.34 6088.63 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
20. col1a1a ENSDARG00000012405, ENSDARG00000116113 785.37 5886.48 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 773.58 5798.11 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. actb1 ENSDARG00000037746, ENSDARG00000113649 761.78 5709.67 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
23. mt-nd1 ENSDARG00000063895 687.62 5153.83 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
24. si:dkey-151g10.6 si:dkey-151g10.6 665.71 4989.61
25. ppiaa ENSDARG00000009212 621.90 4661.25 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. acta1b ENSDARG00000055618 579.76 4345.40 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
27. acta1a ENSDARG00000036371 567.96 4256.96 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. tnnt3a ENSDARG00000030270 561.22 4206.44 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
29. zgc:66286 zgc:66286 539.31 4042.22
30. hmga1a ENSDARG00000028335 529.20 3966.44 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. pvalb1 ENSDARG00000037789 512.35 3840.15 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
32. mt-cyb ENSDARG00000063924 493.81 3701.19 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
33. ptmab ENSDARG00000101766 456.73 3423.27 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
34. eef2b ENSDARG00000100371, ENSDARG00000109247 416.28 3120.09 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
35. zgc:112425 zgc:112425 409.54 3069.57
36. hspa8 ENSDARG00000068992, ENSDARG00000114726 402.80 3019.05 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
37. tnni2a.4 ENSDARG00000029069 394.37 2955.87 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
38. myl10 ENSDARG00000062592 379.20 2842.17 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
39. col1a1b ENSDARG00000035809 377.52 2829.58 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
40. cfl1l ENSDARG00000012972 369.09 2766.39 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
41. rpl10a ENSDARG00000042905, ENSDARG00000115649 369.09 2766.39 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
42. ttna ttna 357.29 2677.95
43. btf3 ENSDARG00000035400, ENSDARG00000116462 353.92 2652.69 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. tpm3 ENSDARG00000005162 348.87 2614.84 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
45. tnnt3b ENSDARG00000068457 338.76 2539.06 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
46. rplp1 ENSDARG00000021864 318.53 2387.44 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
47. myl1 ENSDARG00000014196 303.36 2273.73 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
48. rpl8 ENSDARG00000014867 301.68 2261.14 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. rpl18a ENSDARG00000025073 299.99 2248.48 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
50. zgc:92533 zgc:92533 298.31 2235.88
51. rpl26 ENSDARG00000102317 289.88 2172.70 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 288.20 2160.11 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. pvalb4 ENSDARG00000024433 286.51 2147.44 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
54. rpl11 ENSDARG00000043509 284.82 2134.77 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. si:ch211-226o13.2 284.82 2134.77 si:ch211-226o13.2
56. rps26l ENSDARG00000030408 283.14 2122.18 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
57. rps23 ENSDARG00000021838 281.45 2109.52 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
58. gch2 ENSDARG00000099101 274.71 2059.00 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
59. mt-co1 ENSDARG00000063905 269.66 2021.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. rpl21 ENSDARG00000010516, ENSDARG00000110263 269.66 2021.15 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
61. rpl23 ENSDARG00000053457 269.66 2021.15 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
62. hmgn2 ENSDARG00000099572 264.60 1983.22 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
63. id1 ENSDARG00000040764 264.60 1983.22 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
64. rpl19 ENSDARG00000013307 259.54 1945.30 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. rpl36a ENSDARG00000058105, ENSDARG00000112656 254.49 1907.45 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
66. col2a1a ENSDARG00000069093, ENSDARG00000111202 247.75 1856.93 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
67. fabp3 ENSDARG00000023290 244.38 1831.67 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
68. rps14 ENSDARG00000036629 234.26 1755.82 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
69. cyt1l ENSDARG00000036832 229.21 1717.97 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
70. rps5 ENSDARG00000043453 227.52 1705.30 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
71. aldoab ENSDARG00000034470 224.15 1680.04 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
72. mylpfb ENSDARG00000002589 215.73 1616.93 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
73. pabpc1a ENSDARG00000017219 215.73 1616.93 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
74. ttnb ttnb 214.04 1604.27
75. fkbp1aa ENSDARG00000022684 210.67 1579.01 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
76. myhz1.3 ENSDARG00000067997 210.67 1579.01 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
77. icn ENSDARG00000009978 207.30 1553.75 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
78. ATP5B 203.93 1528.49 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
79. rpl7 ENSDARG00000007320 200.56 1503.23 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
80. smyhc1 ENSDARG00000099959, ENSDARG00000115916 198.87 1490.56 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
81. rps2 ENSDARG00000077291 197.19 1477.97 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
82. rps27.1 ENSDARG00000023298 195.50 1465.31 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
83. eif5a ENSDARG00000017235 193.82 1452.71 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
84. rpl36 ENSDARG00000100588 193.82 1452.71 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
85. rps27a ENSDARG00000032725, ENSDARG00000114059 193.82 1452.71 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
86. rpsa ENSDARG00000019181 192.13 1440.05 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
87. atp5g3b 188.76 1414.79 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
88. rplp0 ENSDARG00000051783 188.76 1414.79 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. RPL29 ENSDARG00000077717 185.39 1389.53 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. mt-nd3 ENSDARG00000063914 185.39 1389.53 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
91. rpl18 ENSDARG00000029533 183.70 1376.86 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
92. rps19 ENSDARG00000030602 183.70 1376.86 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
93. krt8 ENSDARG00000058358, ENSDARG00000109279 182.02 1364.27 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
94. rps4x ENSDARG00000014690 180.33 1351.60 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
95. rpl27 ENSDARG00000015128 178.65 1339.01 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
96. rps20 ENSDARG00000036044 178.65 1339.01 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
97. rps6 ENSDARG00000019778 176.96 1326.35 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
98. rps15 ENSDARG00000070849, ENSDARG00000110979 171.91 1288.49 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
99. AL954137.2 ENSDARG00000114408 170.22 1275.83
100. si:ch1073-429i10.3 170.22 1275.83 si:ch1073-429i10.3, transcript variant X2
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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