Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s53.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9883.83 74096.66
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4576.76 34310.85 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3132.58 23484.19 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2044.16 15324.57 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 1822.25 13660.96 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 1628.52 12208.62 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. mt-nd2 ENSDARG00000063899 1592.12 11935.73 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. actc1b ENSDARG00000099197 1399.56 10492.16 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. mt-nd4 ENSDARG00000063917 1324.42 9928.85 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. atp2a1 ENSDARG00000020574 1217.57 9127.82 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. mt-co2 ENSDARG00000063908 1199.96 8995.81 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. actb2 ENSDARG00000037870 1176.48 8819.78 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1157.69 8678.92 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
14. tmsb4x ENSDARG00000077777 1110.73 8326.87 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-atp6 ENSDARG00000063911 1061.41 7957.13 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1003.88 7525.84 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
17. myhz2 ENSDARG00000012944 975.70 7314.58 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
18. mt-co3 ENSDARG00000063912 934.61 7006.54 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 859.46 6443.16 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
20. eef1a1l1 ENSDARG00000020850 807.80 6055.88 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. acta1b ENSDARG00000055618 689.21 5166.84 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
22. actb1 ENSDARG00000037746, ENSDARG00000113649 665.73 4990.81 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
23. acta1a ENSDARG00000036371 658.69 4938.04 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
24. mt-nd1 ENSDARG00000063895 619.94 4647.54 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. si:dkey-151g10.6 si:dkey-151g10.6 598.81 4489.13
26. col1a1a ENSDARG00000012405, ENSDARG00000116113 595.28 4462.67 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
27. tnnt3a ENSDARG00000030270 578.85 4339.50 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
28. ppiaa ENSDARG00000009212 561.23 4207.40 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. pvalb1 ENSDARG00000037789 547.14 4101.77 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
30. mt-cyb ENSDARG00000063924 515.44 3864.13 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. tnni2a.4 ENSDARG00000029069 515.44 3864.13 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
32. zgc:66286 zgc:66286 514.27 3855.36
33. hmga1a ENSDARG00000028335 479.05 3591.32 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
34. ptmab ENSDARG00000101766 427.38 3203.96 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
35. zgc:112425 zgc:112425 413.29 3098.33
36. eef2b ENSDARG00000100371, ENSDARG00000109247 382.77 2869.53 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. myhz1.3 ENSDARG00000067997 380.42 2851.92 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
38. tnnt3b ENSDARG00000068457 378.07 2834.30 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
39. hspa8 ENSDARG00000068992, ENSDARG00000114726 372.20 2790.29 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
40. myl1 ENSDARG00000014196 368.68 2763.90 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
41. col1a1b ENSDARG00000035809 361.63 2711.05 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 353.41 2649.43 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. rpl10a ENSDARG00000042905, ENSDARG00000115649 353.41 2649.43 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
44. rpl8 ENSDARG00000014867 345.19 2587.80 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. rpl23 ENSDARG00000053457 344.02 2579.03 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. zgc:92533 zgc:92533 341.67 2561.42
47. ttna ttna 335.80 2517.41
48. cfl1l ENSDARG00000012972 329.93 2473.40 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
49. myl10 ENSDARG00000062592 319.36 2394.16 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
50. rpl26 ENSDARG00000102317 315.84 2367.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
51. si:ch211-226o13.2 315.84 2367.78 si:ch211-226o13.2
52. rplp1 ENSDARG00000021864 286.49 2147.75 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. rps23 ENSDARG00000021838 282.97 2121.36 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. tpm3 ENSDARG00000005162 282.97 2121.36 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
55. rpl18a ENSDARG00000025073 281.79 2112.51 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
56. pvalb4 ENSDARG00000024433 268.88 2015.73 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
57. mylpfb ENSDARG00000002589 266.53 1998.11 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 265.35 1989.26 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. mt-co1 ENSDARG00000063905 264.18 1980.49 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. rpl11 ENSDARG00000043509 261.83 1962.88 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. rpl36a ENSDARG00000058105, ENSDARG00000112656 257.13 1927.64 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
62. cyt1l ENSDARG00000036832 252.44 1892.48 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
63. rpl19 ENSDARG00000013307 251.26 1883.63 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
64. id1 ENSDARG00000040764 247.74 1857.25 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
65. rps27a ENSDARG00000032725, ENSDARG00000114059 244.22 1830.86 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 240.70 1804.47 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. rps14 ENSDARG00000036629 240.70 1804.47 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
68. ATP5B 233.65 1751.62 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
69. gch2 ENSDARG00000099101 232.48 1742.85 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
70. fkbp1aa ENSDARG00000022684 231.30 1734.00 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
71. rps20 ENSDARG00000036044 231.30 1734.00 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. eif5a ENSDARG00000017235 228.96 1716.46 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. pabpc1a ENSDARG00000017219 217.21 1628.37 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
74. aldoab ENSDARG00000034470 211.34 1584.36 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
75. gapdh ENSDARG00000043457 210.17 1575.59 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
76. rps26l ENSDARG00000030408 210.17 1575.59 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. rpsa ENSDARG00000019181 207.82 1557.98 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
78. icn ENSDARG00000009978 206.65 1549.20 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
79. ttnb ttnb 205.47 1540.36
80. rps12 ENSDARG00000036875, ENSDARG00000115157 203.12 1522.74 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
81. smyhc1 ENSDARG00000099959, ENSDARG00000115916 201.95 1513.97 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
82. fabp3 ENSDARG00000023290 200.78 1505.20 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
83. rps2 ENSDARG00000077291 198.43 1487.58 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
84. rps19 ENSDARG00000030602 194.91 1461.19 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
85. tmem38a ENSDARG00000024047 193.73 1452.35 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
86. rpl15 ENSDARG00000009285 192.56 1443.58 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
87. rpl27 ENSDARG00000015128 190.21 1425.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
88. hmgn2 ENSDARG00000099572 189.04 1417.19 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
89. rps4x ENSDARG00000014690 187.86 1408.34 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
90. col1a2 ENSDARG00000020007 183.16 1373.11 collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
91. rplp0 ENSDARG00000051783 183.16 1373.11 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 177.29 1329.10 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. si:dkeyp-86f7.3 si:dkeyp-86f7.3 177.29 1329.10
94. col2a1a ENSDARG00000069093, ENSDARG00000111202 176.12 1320.33 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
95. atp5g3b 174.95 1311.56 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
96. rps5 ENSDARG00000043453 174.95 1311.56 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
97. atp5a1 173.77 1302.71 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
98. krt8 ENSDARG00000058358, ENSDARG00000109279 173.77 1302.71 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. pfn1 ENSDARG00000088091 170.25 1276.32 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
100. rps27.1 ENSDARG00000023298 167.90 1258.71 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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