Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s52.

Sample reads: 133,388. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10027.91 75178.52
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4511.06 33819.09 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3159.57 23687.07 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2259.44 16938.86 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 1916.35 14366.74 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mylz3 ENSDARG00000017441 1826.34 13691.94 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
7. actc1b ENSDARG00000099197 1650.23 12371.66 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. mt-nd2 ENSDARG00000063899 1491.08 11178.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. mt-nd4 ENSDARG00000063917 1406.28 10542.78 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. atp2a1 ENSDARG00000020574 1368.45 10259.17 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. mt-co2 ENSDARG00000063908 1235.39 9261.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1221.04 9154.05 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
13. actb2 ENSDARG00000037870 1146.68 8596.58 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1110.15 8322.72 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. myhz2 ENSDARG00000012944 1034.49 7755.50 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
16. tmsb4x ENSDARG00000077777 1031.88 7735.93 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1016.23 7618.60 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. mt-atp6 ENSDARG00000063911 937.96 7031.82 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
19. mt-co3 ENSDARG00000063912 892.30 6689.51 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. acta1b ENSDARG00000055618 844.03 6327.63 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
21. eef1a1l1 ENSDARG00000020850 790.54 5926.62 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
22. acta1a ENSDARG00000036371 727.93 5457.24 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
23. col1a1a ENSDARG00000012405, ENSDARG00000116113 703.14 5271.39 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
24. pvalb1 ENSDARG00000037789 694.01 5202.94 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 637.91 4782.37 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. tnnt3a ENSDARG00000030270 619.65 4645.47 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
27. si:dkey-151g10.6 si:dkey-151g10.6 617.04 4625.90
28. mt-nd1 ENSDARG00000063895 610.52 4577.02 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
29. tnni2a.4 ENSDARG00000029069 573.99 4303.16 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
30. ppiaa ENSDARG00000009212 571.38 4283.60 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
31. mt-cyb ENSDARG00000063924 553.12 4146.70 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. tnnt3b ENSDARG00000068457 460.50 3452.34 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
33. zgc:66286 zgc:66286 455.28 3413.20
34. myhz1.3 ENSDARG00000067997 447.45 3354.50 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
35. hmga1a ENSDARG00000028335 438.32 3286.05 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
36. myl1 ENSDARG00000014196 414.84 3110.03 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
37. zgc:112425 zgc:112425 399.19 2992.70
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 397.88 2982.88 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. ttna ttna 387.44 2904.61
40. ptmab ENSDARG00000101766 383.53 2875.30 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
41. si:ch211-226o13.2 370.49 2777.54 si:ch211-226o13.2
42. col1a1b ENSDARG00000035809 362.66 2718.84 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
43. rpl8 ENSDARG00000014867 356.14 2669.96 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
44. myl10 ENSDARG00000062592 343.09 2572.12 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
45. eef2b ENSDARG00000100371, ENSDARG00000109247 339.18 2542.81 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
46. btf3 ENSDARG00000035400, ENSDARG00000116462 331.35 2484.11 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
47. cfl1l ENSDARG00000012972 331.35 2484.11 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
48. rpl23 ENSDARG00000053457 309.17 2317.83 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
49. rpl10a ENSDARG00000042905, ENSDARG00000115649 305.26 2288.51 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
50. zgc:92533 zgc:92533 294.82 2210.24
51. rpl26 ENSDARG00000102317 289.61 2171.19 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
52. rpl11 ENSDARG00000043509 273.95 2053.78 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 268.73 2014.65 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. ATP5B 267.43 2004.90 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
55. ttnb ttnb 267.43 2004.90
56. mylpfb ENSDARG00000002589 266.12 1995.08 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
57. rpl18a ENSDARG00000025073 262.21 1965.77 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
58. tpm3 ENSDARG00000005162 262.21 1965.77 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
59. pvalb4 ENSDARG00000024433 259.60 1946.20 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
60. id1 ENSDARG00000040764 250.47 1877.76 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
61. hbae3 ENSDARG00000079305 247.86 1858.19 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
62. rplp1 ENSDARG00000021864 246.56 1848.44 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
63. cyt1l ENSDARG00000036832 245.25 1838.62 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
64. aldoab ENSDARG00000034470 242.64 1819.05 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
65. fabp3 ENSDARG00000023290 241.34 1809.31 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
66. rpl9 ENSDARG00000037350, ENSDARG00000112384 241.34 1809.31 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
67. rps23 ENSDARG00000021838 238.73 1789.74 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
68. eif5a ENSDARG00000017235 229.60 1721.29 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
69. mt-co1 ENSDARG00000063905 226.99 1701.73 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 224.38 1682.16 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. gapdh ENSDARG00000043457 217.86 1633.28 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
72. rpl19 ENSDARG00000013307 217.86 1633.28 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. rps27a ENSDARG00000032725, ENSDARG00000114059 213.94 1603.89 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
74. rpl5b ENSDARG00000015862, ENSDARG00000109661 212.64 1594.15 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
75. rps20 ENSDARG00000036044 211.33 1584.33 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. rps14 ENSDARG00000036629 210.03 1574.58 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
77. rps2 ENSDARG00000077291 208.72 1564.76 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
78. rpl27 ENSDARG00000015128 204.81 1535.45 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
79. rps26l ENSDARG00000030408 204.81 1535.45 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
80. col2a1a ENSDARG00000069093, ENSDARG00000111202 203.51 1525.70 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
81. smyhc1 ENSDARG00000099959, ENSDARG00000115916 202.20 1515.88 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
82. rps12 ENSDARG00000036875, ENSDARG00000115157 199.59 1496.31 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
83. rpl7 ENSDARG00000007320 198.29 1486.57 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
84. rpsa ENSDARG00000019181 190.46 1427.87 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
85. rps19 ENSDARG00000030602 189.16 1418.12 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
86. atp5g3b 187.85 1408.30 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
87. atp5a1 183.94 1378.99 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
88. rpl36 ENSDARG00000100588 183.94 1378.99 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
89. icn ENSDARG00000009978 180.02 1349.60 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
90. pabpc1a ENSDARG00000017219 178.72 1339.85 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
91. hbbe3 ENSDARG00000038147, ENSDARG00000109344 177.42 1330.11 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
92. col9a1 col9a1 176.11 1320.28
93. AL954137.2 ENSDARG00000114408 174.81 1310.54
94. rps4x ENSDARG00000014690 174.81 1310.54 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
95. hmgn2 ENSDARG00000099572 173.50 1300.72 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
96. gch2 ENSDARG00000099101 172.20 1290.97 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
97. rps24 ENSDARG00000039347 170.89 1281.15 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
98. rps5 ENSDARG00000043453 170.89 1281.15 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
99. rps9 ENSDARG00000011405, ENSDARG00000113248 170.89 1281.15 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
100. hbbe1.1 ENSDARG00000113599 166.98 1251.84 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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